Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

16042060 .. 16044641

Gene Structure 2582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCAGCAAGTACGAACGGCAGAGCATTAGCCGGATTGAGCCTCGACGACGTTTTGACCCCAAGAGCAGCAACAGCAGCATCACCCAAACAGCCCCCGCCGGCGCCGGCGATACCCGCCTCCATTTCGGGTCGGACCCTGCTCGACATTATCCGCGACGAAGAGCCCAAATCGTATAAAGCCTTGATCGGAAAGAAAGACAAGAAGCCGTGGAAGACGTTCAAAGACCGCCTCCGCCTCAAAAAAGCCAGCGCCGCCTGGGCCTCCTCCATCCTCGTCCCCACCTCCGACGTCTCCGTCCACCGATACAACAACAACCACCGCCACCAACTCCAAGGCTACAGCCACAGCCGAGCCCGCTGCAACTCCATCCGTTACGTCACGCCGGAGCCGCAGCCCATGGCTGAGCCCGGAGACAACGCCGCCGCCACCAGCCGCCCGTCGCCGAGCTTCACGCGGCGGAGTTCCGTCAGGTTCGCGTCGCCGGTGGACGACGTCGACTCGCCTCGCCGCCGGCTGGAGACGGCGATCAGCGAGGAGAGGTCGCTTTCGGCGAGGGAGGCGGTGGCGGCACAACATGCCGCCGAGGCCGCCGCCGCCGCCGCCGAGGAGGCAGCGGCGGAGGGAGAAGGAGGTGAGGGAAGCGGAGCATCTTCATCTTCATCGGAGAAGGCTTCCGGTGAACAGGTAGCGGAGCAGCCGGTGAGGATGTCATTGATGGACTTGTTGGAGGAGACGGACAGGCAGATGGGGCTGGAAGGCGGGAGGTACACCATGGATGACGAGGATGAAGAAGAAGAGGAGGAGGAGGAGCCGGTAGCGGCGGCGGCGGCGGAGGAAAAACAGGGAGGAGAAGAAGGTGGGGGAGTGGAGTACAGTTGCTGCGTGTGCATGGTGAGGCATAAAGGCTCGGCATTTATCCCCTGCGGACACACGTTTTGCCGGATGTGCTCCAGAGAGCTCTGGGTTCAGAGAGGGAATTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTTGACATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

343

Amino Acids

36.94

Weight (kDa)

5.24

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	292 - 335	1.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	294 - 331	7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AatII	GACGTC	2 cut(s)	294, 498
AccB1I	GGYRCC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	3 cut(s)	156, 457, 479
AcsI	RAATTY	1 cut(s)	1011
AcyI	GRCGYC	3 cut(s)	104, 291, 495
AfaI	GTAC	3 cut(s)	13, 770, 875
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	2 cut(s)	450, 961
AluI	AGCT	2 cut(s)	450, 961
Alw21I	GWGCWC	2 cut(s)	953, 963
Alw26I	GTCTC	4 cut(s)	298, 408, 515, 728
AlwNI	CAGNNNCTG	1 cut(s)	882
AoxI	GGCC	2 cut(s)	261, 588
ApeKI	GCWGC	7 cut(s)	68, 77, 360, 394, 614, 697, 882
ApoI	RAATTY	1 cut(s)	1011
ArsI	GACNNNNNNTTYG	2 cut(s)	921, 953
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	106, 254
AspS9I	GGNCC	2 cut(s)	135, 261
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	5 cut(s)	75, 647, 692, 715, 907
AvaII	GGWCC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	4 cut(s)	168, 358, 411, 963
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	953, 963
BbvI	GCAGC	7 cut(s)	80, 89, 347, 406, 626, 709, 869
BccI	CCATC	4 cut(s)	278, 377, 712, 742
BceAI	ACGGC	3 cut(s)	34, 193, 540
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	4 cut(s)	298, 408, 515, 728
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	2 cut(s)	107, 255
BglI	GCCNNNNNGGC	3 cut(s)	260, 587, 611
BlpI	GCTNAGC	1 cut(s)	405
Bme1390I	CCNGG	2 cut(s)	259, 411
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	135, 261
BmiI	GGNNCC	4 cut(s)	105, 137, 390, 813
BmrFI	CCNGG	2 cut(s)	259, 411
BmsI	GCATC	2 cut(s)	89, 659
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	2 cut(s)	539, 937
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	411
BsaHI	GRCGYC	3 cut(s)	104, 291, 495
BsaJI	CCNNGG	7 cut(s)	209, 258, 334, 399, 585, 606, 774
BsaWI	WCCGGW	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse118I	RCCGGY	6 cut(s)	100, 106, 484, 513, 700, 814
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	7 cut(s)	209, 258, 334, 399, 585, 606, 774
BseGI	GGATG	6 cut(s)	270, 369, 714, 784, 793, 951
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	9 cut(s)	256, 551, 623, 746, 815, 818, 821, 824, 864
BseXI	GCAGC	7 cut(s)	80, 89, 347, 406, 626, 709, 869
Bsh1236I	CGCG	3 cut(s)	156, 457, 479
BshFI	GGCC	2 cut(s)	263, 590
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	2 cut(s)	953, 963
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	4 cut(s)	298, 408, 515, 728
BsmBI	CGTCTC	3 cut(s)	298, 515, 728
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	263, 590
Bsp1286I	GDGCHC	5 cut(s)	168, 358, 411, 953, 963
Bsp143I	GATC	2 cut(s)	186, 528
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	2 cut(s)	399, 774
BspANI	GGCC	2 cut(s)	263, 590
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	3 cut(s)	156, 457, 479
BspLI	GGNNCC	4 cut(s)	105, 137, 390, 813
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	103
BsrFI	RCCGGY	6 cut(s)	100, 106, 484, 513, 700, 814
BssAI	RCCGGY	6 cut(s)	100, 106, 484, 513, 700, 814
BssECI	CCNNGG	7 cut(s)	209, 258, 334, 399, 585, 606, 774
BssMI	GATC	2 cut(s)	186, 528
BssNI	GRCGYC	3 cut(s)	104, 291, 495
BssT1I	CCWWGG	3 cut(s)	334, 399, 774
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	878
Bst6I	CTCTTC	2 cut(s)	156, 792
BstACI	GRCGYC	3 cut(s)	104, 291, 495
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	5 cut(s)	102, 108, 250, 358, 515
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	3 cut(s)	209, 399, 774
BstF5I	GGATG	6 cut(s)	270, 369, 714, 784, 793, 951
BstFNI	CGCG	3 cut(s)	156, 457, 479
BstH2I	RGCGCY	2 cut(s)	107, 255
BstHHI	GCGC	2 cut(s)	106, 254
BstKTI	GATC	2 cut(s)	189, 531
BstMAI	GTCTC	4 cut(s)	298, 408, 515, 728
BstMBI	GATC	2 cut(s)	186, 528
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	257, 409
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	3 cut(s)	156, 457, 479
BstV1I	GCAGC	7 cut(s)	80, 89, 347, 406, 626, 709, 869
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	263, 590
BtgI	CCRYGG	3 cut(s)	209, 399, 774
BtsCI	GGATG	6 cut(s)	270, 369, 714, 784, 793, 951
Cac8I	GCNNGC	5 cut(s)	102, 108, 250, 358, 515
CaiI	CAGNNNCTG	1 cut(s)	882
CfoI	GCGC	2 cut(s)	106, 254
Cfr10I	RCCGGY	6 cut(s)	100, 106, 484, 513, 700, 814
Cfr13I	GGNCC	2 cut(s)	135, 261
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	12, 769, 874
CviAII	CATG	4 cut(s)	400, 578, 775, 892
CviQI	GTAC	3 cut(s)	12, 769, 874
DdeI	CTNAG	1 cut(s)	405
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	2 cut(s)	188, 530
DpnII	GATC	2 cut(s)	186, 528
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eam1104I	CTCTTC	2 cut(s)	156, 792
EarI	CTCTTC	2 cut(s)	156, 792
EciI	GGCGGA	4 cut(s)	224, 475, 635, 848
Ecl136II	GAGCTC	1 cut(s)	961
Eco130I	CCWWGG	3 cut(s)	334, 399, 774
Eco24I	GRGCYC	4 cut(s)	168, 358, 411, 963
Eco47I	GGWCC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	961
EcoICRI	GAGCTC	1 cut(s)	961
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	3 cut(s)	334, 399, 774
EcoT38I	GRGCYC	4 cut(s)	168, 358, 411, 963
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	3 cut(s)	334, 399, 774
Esp3I	CGTCTC	3 cut(s)	298, 515, 728
FaeI	CATG	4 cut(s)	403, 581, 778, 895
FaiI	YATR	6 cut(s)	177, 401, 579, 776, 893, 903
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	4 cut(s)	399, 577, 774, 891
FauI	CCCGC	4 cut(s)	105, 124, 365, 755
FblI	GTMKAC	1 cut(s)	498
FokI	GGATG	6 cut(s)	257, 356, 721, 791, 800, 958
FriOI	GRGCYC	4 cut(s)	168, 358, 411, 963
GlaI	GCGC	2 cut(s)	105, 253
GsuI	CTGGAG	2 cut(s)	539, 937
HaeII	RGCGCY	2 cut(s)	107, 255
HaeIII	GGCC	2 cut(s)	263, 590
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	2 cut(s)	106, 254
Hin1I	GRCGYC	3 cut(s)	104, 291, 495
Hin1II	CATG	4 cut(s)	403, 581, 778, 895
Hin6I	GCGC	2 cut(s)	104, 252
HinP1I	GCGC	2 cut(s)	104, 252
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	1 cut(s)	500
HphI	GGTGA	5 cut(s)	75, 647, 692, 715, 907
Hpy166II	GTNNAC	5 cut(s)	301, 490, 499, 683, 771
Hpy188I	TCNGA	6 cut(s)	135, 191, 289, 667, 972, 1028
Hpy188III	TCNNGA	2 cut(s)	954, 1016
Hpy8I	GTNNAC	5 cut(s)	301, 490, 499, 683, 771
Hpy99I	CGWCG	8 cut(s)	50, 53, 161, 293, 445, 484, 497, 500
HpyAV	CCTTC	4 cut(s)	623, 664, 752, 851
HpyCH4III	ACNGT	1 cut(s)	878
HpyCH4IV	ACGT	6 cut(s)	51, 218, 291, 378, 495, 935
HpyCH4V	TGCA	3 cut(s)	363, 891, 993
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	6 cut(s)	51, 218, 291, 378, 495, 935
Hsp92I	GRCGYC	3 cut(s)	104, 291, 495
Hsp92II	CATG	4 cut(s)	403, 581, 778, 895
HspAI	GCGC	2 cut(s)	104, 252
KasI	GGCGCC	1 cut(s)	103
KroI	GCCGGC	3 cut(s)	100, 106, 513
KroNI	GCCGGC	3 cut(s)	102, 108, 515
Kzo9I	GATC	2 cut(s)	186, 528
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	5 cut(s)	388, 647, 694, 811, 956
Lsp1109I	GCAGC	7 cut(s)	80, 89, 347, 406, 626, 709, 869
LweI	GCATC	2 cut(s)	89, 659
MaeII	ACGT	6 cut(s)	51, 218, 291, 378, 495, 935
MaeIII	GTNAC	2 cut(s)	374, 379
MalI	GATC	2 cut(s)	188, 530
MboI	GATC	2 cut(s)	186, 528
MboII	GAAGA	8 cut(s)	173, 226, 645, 651, 803, 806, 809, 866
MhlI	GDGCHC	5 cut(s)	168, 358, 411, 953, 963
MluCI	AATT	3 cut(s)	979, 997, 1011
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	3 cut(s)	113, 312, 708
MreI	CGCCGGCG	2 cut(s)	100, 106
MroNI	GCCGGC	3 cut(s)	100, 106, 513
MroXI	GAANNNNTTC	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	360, 617
MspR9I	CCNGG	2 cut(s)	259, 411
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	3 cut(s)	156, 457, 479
NaeI	GCCGGC	3 cut(s)	102, 108, 515
NarI	GGCGCC	1 cut(s)	104
NciI	CCSGG	1 cut(s)	411
NcoI	CCATGG	2 cut(s)	399, 774
NdeII	GATC	2 cut(s)	186, 528
NgoMIV	GCCGGC	3 cut(s)	100, 106, 513
NlaIII	CATG	4 cut(s)	403, 581, 778, 895
NlaIV	GGNNCC	4 cut(s)	105, 137, 390, 813
NmeAIII	GCCGAG	5 cut(s)	377, 471, 610, 631, 890
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PdiI	GCCGGC	3 cut(s)	102, 108, 515
PdmI	GAANNNNTTC	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	494
PleI	GAGTC	1 cut(s)	494
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	963
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	4 cut(s)	105, 137, 390, 813
PspPI	GGNCC	2 cut(s)	135, 261
PstNI	CAGNNNCTG	1 cut(s)	882
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	3 cut(s)	13, 770, 875
RsaNI	GTAC	3 cut(s)	12, 769, 874
SacI	GAGCTC	1 cut(s)	963
SalI	GTCGAC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	186, 528
Sau96I	GGNCC	2 cut(s)	135, 261
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	259, 411
SduI	GDGCHC	5 cut(s)	168, 358, 411, 953, 963
SfaNI	GCATC	2 cut(s)	89, 659
SfcI	CTRYAG	1 cut(s)	340
SfoI	GGCGCC	1 cut(s)	105
SgrAI	CRCCGGYG	3 cut(s)	100, 106, 484
SinI	GGWCC	1 cut(s)	135
Sse9I	AATT	3 cut(s)	979, 997, 1011
SspDI	GGCGCC	1 cut(s)	103
SstI	GAGCTC	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	257, 409
StyI	CCWWGG	3 cut(s)	334, 399, 774
TaaI	ACNGT	1 cut(s)	878
TaiI	ACGT	6 cut(s)	54, 221, 294, 381, 498, 938
TaqI	TCGA	3 cut(s)	45, 144, 498
TasI	AATT	3 cut(s)	979, 997, 1011
TatI	WGTACW	1 cut(s)	873
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	7 cut(s)	68, 77, 360, 394, 614, 697, 882
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	645, 651, 804, 991
TspGWI	ACGGA	4 cut(s)	286, 362, 457, 752
Tth111I	GACNNNGTC	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	1011
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	218
ZraI	GACGTC	2 cut(s)	292, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.