Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

30234522 .. 30236832

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1174100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCAGCAAGTAGCAACGGGAGAGACTTAGCCGGATTGAGCCTACACGACGTGTTGCTGGCCCCTGCAGCCGCCAAACAGCCCCCTCCACCGCCCGCACTTCCCGCCATAATCTCGGGTCGGACCCTACTCGATATAATCCGCGACGAGGAGCCCAAGTCCTACCGGGCCCTGATTGGCAAGAAGGATAAGAAAGCCTGGAAGTCGTTCAAAGAACGCCTCCTACTCAAACGAGCCGGCTCGGCCTGGACCTCCTCCGTCCGTGTCCCCACCTCCGACATCCCTATCCGGAATACGACTAACTACGGTTCCAATCACCACCACCACCCGCGATCTCGCAACTCCCGTCGCAGCTCGGTCCGTTACGTCACTCCCGAGTCCGATCTCGACATGACTCAGCAGGTCGAGAGGCAAATTTCGCGGCGGGGCTCCACCCGGTTCAGCGCCAACCCCTCGATTCCGCCCGACGAGGTGGATATAAACAACCCCCGCGCCTCGATGTTCTCGCGCCAGGGCTCTGTGCGGTTCGCGGCGGACGAGGTCGCGGCGGACTCTCCAAGGCGGCGATTGTCGGCGGCGCTGGACGAGGAGAGATCGCTGTCGGCGAGGGAAGCTGTAGCGGCGCAAGAGGCTGCCGAAGCTGCGGCGGCGGCATTGGCTGCGGAAGAAGATACGAGAAATGACGTGTCGTCGGGAGAGACGGGTGCGGCGTCGGGGACGGCGGAGCCGGTGAGGATGTCGTTGATGGACTTGTTGGAGGAGACGGACAGGCAGATGGGGGTGGAGTCGAGGTACACGATGGACGAGGACGAGGATGAGCAGGTGTACGAGGAGGAAGAGGAGGAGGAGGAGGTGGATGTGGCGGCGGAAGAAGGGAATGTGGAGTATAACTGCTGCGTGTGCATGGTGAGGCATAAGGGCGCGGCGTTTATCCCCTGCGGGCATACGTTCTGCAGGATGTGCTCCCGAGAGCTGTGGGTCCAGCGGGGCAATTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTCGATATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

347

Amino Acids

38.29

Weight (kDa)

5.12

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	296 - 339	5.9e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	298 - 335	5.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	2 cut(s)	391, 811
AccII	CGCG	8 cut(s)	144, 331, 421, 492, 508, 530, 545, 923
AccIII	TCCGGA	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	414, 1023
AcyI	GRCGYC	1 cut(s)	710
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	2 cut(s)	794, 827
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	2 cut(s)	51, 684
AgsI	TTSAA	1 cut(s)	211
AhdI	GACNNNNNGTC	1 cut(s)	688
AjiI	CACGTC	2 cut(s)	52, 685
AjnI	CCWGG	3 cut(s)	197, 245, 510
AluBI	AGCT	4 cut(s)	354, 614, 641, 973
AluI	AGCT	4 cut(s)	354, 614, 641, 973
Alw21I	GWGCWC	1 cut(s)	965
Alw26I	GTCTC	3 cut(s)	18, 692, 755
Ama87I	CYCGRG	3 cut(s)	115, 374, 966
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	3 cut(s)	60, 168, 243
ApaI	GGGCCC	1 cut(s)	172
ApeKI	GCWGC	6 cut(s)	68, 351, 632, 641, 659, 894
ApoI	RAATTY	2 cut(s)	414, 1023
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	6 cut(s)	446, 494, 510, 580, 625, 923
AspS9I	GGNCC	7 cut(s)	61, 123, 168, 169, 249, 358, 979
AsuC2I	CCSGG	2 cut(s)	167, 436
AsuHPI	GGTGA	3 cut(s)	308, 742, 919
AvaI	CYCGRG	3 cut(s)	115, 374, 966
AvaII	GGWCC	4 cut(s)	123, 249, 358, 979
BaeGI	GKGCMC	1 cut(s)	172
BanII	GRGCYC	4 cut(s)	156, 172, 431, 518
Bbv12I	GWGCWC	1 cut(s)	965
BbvI	GCAGC	6 cut(s)	80, 363, 619, 628, 646, 881
BccI	CCATC	3 cut(s)	739, 769, 793
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	3 cut(s)	199, 247, 512
BcnI	CCSGG	2 cut(s)	167, 436
BcoDI	GTCTC	3 cut(s)	18, 692, 755
BfmI	CTRYAG	3 cut(s)	66, 615, 952
BfoI	RGCGCY	2 cut(s)	447, 581
BfuAI	ACCTGC	2 cut(s)	391, 811
BglI	GCCNNNNNGGC	1 cut(s)	242
Bme1390I	CCNGG	5 cut(s)	167, 199, 247, 436, 512
Bme18I	GGWCC	4 cut(s)	123, 249, 358, 979
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmeT110I	CYCGRG	3 cut(s)	115, 374, 966
BmgBI	CACGTC	2 cut(s)	52, 685
BmgT120I	GGNCC	7 cut(s)	61, 123, 168, 169, 249, 358, 979
BmiI	GGNNCC	8 cut(s)	63, 125, 153, 170, 310, 430, 726, 980
BmrFI	CCNGG	5 cut(s)	167, 199, 247, 436, 512
BpuMI	CCSGG	2 cut(s)	167, 436
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	511, 557
BsaWI	WCCGGW	1 cut(s)	288
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 776, 806
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	2 cut(s)	236, 727
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	3 cut(s)	199, 247, 512
BseDI	CCNNGG	2 cut(s)	511, 557
BseGI	GGATG	5 cut(s)	279, 741, 820, 862, 963
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	410
BseRI	GAGGAG	9 cut(s)	164, 244, 602, 773, 845, 854, 857, 860, 863
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	6 cut(s)	80, 363, 619, 628, 646, 881
Bsh1236I	CGCG	8 cut(s)	144, 331, 421, 492, 508, 530, 545, 923
BshFI	GGCC	3 cut(s)	62, 170, 245
BsiHKAI	GWGCWC	1 cut(s)	965
BsiHKCI	CYCGRG	3 cut(s)	115, 374, 966
BsiSI	CCGG	6 cut(s)	33, 166, 237, 289, 436, 728
BslFI	GGGAC	2 cut(s)	251, 730
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	18, 692, 755
BsmBI	CGTCTC	2 cut(s)	692, 755
BsmFI	GGGAC	2 cut(s)	251, 730
BsnI	GGCC	3 cut(s)	62, 170, 245
BsoBI	CYCGRG	3 cut(s)	115, 374, 966
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	5 cut(s)	156, 172, 431, 518, 965
Bsp13I	TCCGGA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	332, 382, 593
BspANI	GGCC	3 cut(s)	62, 170, 245
BspCNI	CTCAG	1 cut(s)	409
BspEI	TCCGGA	1 cut(s)	288
BspFNI	CGCG	8 cut(s)	144, 331, 421, 492, 508, 530, 545, 923
BspLI	GGNNCC	8 cut(s)	63, 125, 153, 170, 310, 430, 726, 980
BspMAI	CTGCAG	2 cut(s)	70, 956
BspMI	ACCTGC	2 cut(s)	391, 811
BsrFI	RCCGGY	2 cut(s)	236, 727
BssAI	RCCGGY	2 cut(s)	236, 727
BssECI	CCNNGG	2 cut(s)	511, 557
BssMI	GATC	3 cut(s)	332, 382, 593
BssNI	GRCGYC	1 cut(s)	710
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	3 cut(s)	199, 247, 512
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	831
BstACI	GRCGYC	1 cut(s)	710
BstAPI	GCANNNNNTGC	2 cut(s)	659, 960
BstC8I	GCNNGC	4 cut(s)	60, 96, 238, 941
BstDEI	CTNAG	2 cut(s)	28, 396
BstF5I	GGATG	5 cut(s)	279, 741, 820, 862, 963
BstFNI	CGCG	8 cut(s)	144, 331, 421, 492, 508, 530, 545, 923
BstH2I	RGCGCY	2 cut(s)	447, 581
BstHHI	GCGC	6 cut(s)	446, 494, 510, 580, 625, 923
BstKTI	GATC	3 cut(s)	335, 385, 596
BstMAI	GTCTC	3 cut(s)	18, 692, 755
BstMBI	GATC	3 cut(s)	332, 382, 593
BstNI	CCWGG	3 cut(s)	199, 247, 512
BstSCI	CCNGG	5 cut(s)	165, 197, 245, 434, 510
BstSFI	CTRYAG	3 cut(s)	66, 615, 952
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	8 cut(s)	144, 331, 421, 492, 508, 530, 545, 923
BstV1I	GCAGC	6 cut(s)	80, 363, 619, 628, 646, 881
BsuRI	GGCC	3 cut(s)	62, 170, 245
BtrI	CACGTC	2 cut(s)	52, 685
BtsCI	GGATG	5 cut(s)	279, 741, 820, 862, 963
BveI	ACCTGC	2 cut(s)	391, 811
Cac8I	GCNNGC	4 cut(s)	60, 96, 238, 941
CfoI	GCGC	6 cut(s)	446, 494, 510, 580, 625, 923
Cfr10I	RCCGGY	2 cut(s)	236, 727
Cfr13I	GGNCC	7 cut(s)	61, 123, 168, 169, 249, 358, 979
CpoI	CGGWCCG	1 cut(s)	358
CseI	GACGC	1 cut(s)	699
Csp6I	GTAC	2 cut(s)	793, 826
CspI	CGGWCCG	1 cut(s)	358
CviAII	CATG	2 cut(s)	391, 904
CviQI	GTAC	2 cut(s)	793, 826
DdeI	CTNAG	2 cut(s)	28, 396
DpnI	GATC	3 cut(s)	334, 384, 595
DpnII	GATC	3 cut(s)	332, 382, 593
DraIII	CACNNNGTG	1 cut(s)	52
DriI	GACNNNNNGTC	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	831
Eam1105I	GACNNNNNGTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	831
EciI	GGCGGA	5 cut(s)	450, 548, 563, 737, 881
Eco130I	CCWWGG	1 cut(s)	557
Eco24I	GRGCYC	4 cut(s)	156, 172, 431, 518
Eco47I	GGWCC	4 cut(s)	123, 249, 358, 979
Eco88I	CYCGRG	3 cut(s)	115, 374, 966
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	3 cut(s)	197, 245, 510
EcoT14I	CCWWGG	1 cut(s)	557
EcoT38I	GRGCYC	4 cut(s)	156, 172, 431, 518
ErhI	CCWWGG	1 cut(s)	557
Esp3I	CGTCTC	2 cut(s)	692, 755
FaeI	CATG	2 cut(s)	394, 907
FaiI	YATR	8 cut(s)	110, 137, 392, 479, 888, 905, 915, 945
FaqI	GGGAC	2 cut(s)	251, 730
FatI	CATG	2 cut(s)	390, 903
FauI	CCCGC	7 cut(s)	103, 112, 336, 417, 497, 932, 978
FokI	GGATG	5 cut(s)	266, 748, 827, 869, 970
FriOI	GRGCYC	4 cut(s)	156, 172, 431, 518
GlaI	GCGC	6 cut(s)	445, 493, 509, 579, 624, 922
HaeII	RGCGCY	2 cut(s)	447, 581
HaeIII	GGCC	3 cut(s)	62, 170, 245
HapII	CCGG	6 cut(s)	33, 166, 237, 289, 436, 728
HgaI	GACGC	1 cut(s)	699
HhaI	GCGC	6 cut(s)	446, 494, 510, 580, 625, 923
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	2 cut(s)	394, 907
Hin6I	GCGC	6 cut(s)	444, 492, 508, 578, 623, 921
HinP1I	GCGC	6 cut(s)	444, 492, 508, 578, 623, 921
HinfI	GANTC	5 cut(s)	377, 394, 457, 551, 785
HpaII	CCGG	6 cut(s)	33, 166, 237, 289, 436, 728
HphI	GGTGA	3 cut(s)	308, 742, 919
Hpy166II	GTNNAC	2 cut(s)	795, 826
Hpy188I	TCNGA	4 cut(s)	123, 277, 382, 1040
Hpy188III	TCNNGA	7 cut(s)	289, 374, 386, 406, 693, 966, 1028
Hpy8I	GTNNAC	2 cut(s)	795, 826
Hpy99I	CGWCG	6 cut(s)	53, 149, 351, 470, 694, 715
HpyAV	CCTTC	2 cut(s)	178, 866
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	4 cut(s)	51, 366, 684, 947
HpyCH4V	TGCA	4 cut(s)	68, 903, 954, 1005
HpyF3I	CTNAG	2 cut(s)	28, 396
HpySE526I	ACGT	4 cut(s)	51, 366, 684, 947
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	2 cut(s)	394, 907
HspAI	GCGC	6 cut(s)	444, 492, 508, 578, 623, 921
Kpn2I	TCCGGA	1 cut(s)	288
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	332, 382, 593
LmnI	GCTCC	4 cut(s)	151, 434, 724, 968
Lsp1109I	GCAGC	6 cut(s)	80, 363, 619, 628, 646, 881
MaeII	ACGT	4 cut(s)	51, 366, 684, 947
MaeIII	GTNAC	2 cut(s)	362, 367
MalI	GATC	3 cut(s)	334, 384, 595
MboI	GATC	3 cut(s)	332, 382, 593
MboII	GAAGA	4 cut(s)	677, 680, 848, 881
MfeI	CAATTG	1 cut(s)	991
MhlI	GDGCHC	5 cut(s)	156, 172, 431, 518, 965
MluCI	AATT	4 cut(s)	414, 991, 1009, 1023
MlyI	GAGTC	4 cut(s)	386, 388, 545, 794
MmeI	TCCRAC	3 cut(s)	101, 300, 735
MroI	TCCGGA	1 cut(s)	288
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	985
MspI	CCGG	6 cut(s)	33, 166, 237, 289, 436, 728
MspR9I	CCNGG	5 cut(s)	167, 199, 247, 436, 512
MunI	CAATTG	1 cut(s)	991
MvaI	CCWGG	3 cut(s)	199, 247, 512
MvnI	CGCG	8 cut(s)	144, 331, 421, 492, 508, 530, 545, 923
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	2 cut(s)	167, 436
NdeII	GATC	3 cut(s)	332, 382, 593
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	394, 907
NlaIV	GGNNCC	8 cut(s)	63, 125, 153, 170, 310, 430, 726, 980
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	6 cut(s)	343, 372, 534, 602, 707, 794
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	457
PflFI	GACNNNGTC	1 cut(s)	539
PleI	GAGTC	4 cut(s)	385, 388, 545, 793
PpsI	GAGTC	4 cut(s)	385, 388, 545, 793
Psp6I	CCWGG	3 cut(s)	197, 245, 510
PspGI	CCWGG	3 cut(s)	197, 245, 510
PspN4I	GGNNCC	8 cut(s)	63, 125, 153, 170, 310, 430, 726, 980
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	7 cut(s)	61, 123, 168, 169, 249, 358, 979
PsrI	GAACNNNNNNTAC	2 cut(s)	207, 239
PstI	CTGCAG	2 cut(s)	70, 956
PsyI	GACNNNGTC	1 cut(s)	539
RsaI	GTAC	2 cut(s)	794, 827
RsaNI	GTAC	2 cut(s)	793, 826
Rsr2I	CGGWCCG	1 cut(s)	358
RsrII	CGGWCCG	1 cut(s)	358
Sau3AI	GATC	3 cut(s)	332, 382, 593
Sau96I	GGNCC	7 cut(s)	61, 123, 168, 169, 249, 358, 979
SchI	GAGTC	4 cut(s)	386, 388, 545, 794
ScrFI	CCNGG	5 cut(s)	167, 199, 247, 436, 512
SduI	GDGCHC	5 cut(s)	156, 172, 431, 518, 965
SfcI	CTRYAG	3 cut(s)	66, 615, 952
SinI	GGWCC	4 cut(s)	123, 249, 358, 979
Sse9I	AATT	4 cut(s)	414, 991, 1009, 1023
StyD4I	CCNGG	5 cut(s)	165, 197, 245, 434, 510
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	4 cut(s)	54, 369, 687, 950
TaqI	TCGA	7 cut(s)	132, 387, 405, 455, 497, 788, 1029
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	4 cut(s)	414, 991, 1009, 1023
TfiI	GAWTC	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	6 cut(s)	68, 351, 632, 641, 659, 894
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	1003
TspGWI	ACGGA	4 cut(s)	247, 251, 350, 779
Tth111I	GACNNNGTC	1 cut(s)	539
VpaK11BI	GGWCC	4 cut(s)	123, 249, 358, 979
XapI	RAATTY	2 cut(s)	414, 1023
XmnI	GAANNNNTTC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.