Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

49805737 .. 49808141

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG277300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCAGCAAGTGCGGACGGCAGAGCATTAGCCGGACTGAGCCTCGAAGACGTCTTATCCCCAGCAGCAGCGCCCAAAGAACCCCCGCCGGCTCCGGTGATACCGGCGTCTATTTCGGGTCTGACCCTCCTTGACATTATCCGCAACGAGGAGCCCAAATCGTATAAGGCCTTGATCGGAAAGAAAGACAAGAAGCCGTGGAAGACGTTCAAAGACCGCCTCCGCCTCAAGAAAGCCAGCGCAGCCTGGGCCTCCAACGCCCAAGTCCCCACCTCCGACGTCCCCGTCCGGAACAACCACCACCACCGCCAGCCAGGCTACAGCCACAGCCGATCCCGCAACTCCATCCGTTACATCACGCCGGAGCCGCAGCCGATGGCTGAGCCCGGATCAAACGCCGACACCAGCAACCGACCGCCGCAGGCAGGCTCCGCGCCGAGTTTCAATCGGCGGAGCTCCGTGCGGTTCGCGTCGGACATCGAGTCGCCGCGGCCCAAGCTGGAGACGGCGATCAGCGAGGAGAGGTCGCTGTCGGCGAGGGAGGCGGTGGCGGCACAGGAGGCTGCCGAGGCCTCCGCCGCAGCAGCGGCGGCTGAGGCGGCAGCGGCGGAGGAGGAGGAGGCAGAGAGAGAAGGAGAGGGAGACGGCGCATCTTCGTCGGAGAAGGCTTCCGGTGAAACGGTAACGTCGCCGGAGGCGGAGCCGGTGAGGATGTCGCTGATGGACTTGTTGGAGGAGACGGACAGGCAGATGGGGCTGGAGGGAGGGAGGTACACCATGGACGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAAGTGGAAGAGGTGGAGGAGATGAAGGAGGTGGAAGAACCAGAAGAAGCTGGGGGAGTGGAGCACAGTTGCTGCGTGTGCATGGTGAGGCATAAAGGCGCGGCGTTTATCCCCTGCGGGCATACTTTTTGCCGGATGTGCTCCAGAGAGTTGTGGGTGCAGAGAGGGAACTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTGGACATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

343

Amino Acids

37.33

Weight (kDa)

4.78

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	292 - 336	7.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	295 - 332	5.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AatII	GACGTC	2 cut(s)	54, 282
AccII	CGCG	4 cut(s)	434, 470, 490, 914
AccIII	TCCGGA	1 cut(s)	288
AclWI	GGATC	2 cut(s)	327, 397
AcsI	RAATTY	1 cut(s)	1014
AcyI	GRCGYC	3 cut(s)	51, 107, 279
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	2 cut(s)	148, 425
AgsI	TTSAA	2 cut(s)	211, 445
AhdI	GACNNNNNGTC	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	245, 313
AluBI	AGCT	3 cut(s)	456, 499, 863
AluI	AGCT	3 cut(s)	456, 499, 863
Alw21I	GWGCWC	3 cut(s)	458, 879, 956
Alw26I	GTCTC	3 cut(s)	497, 636, 731
AlwI	GGATC	2 cut(s)	327, 397
AlwNI	CAGNNNCTG	1 cut(s)	885
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	4 cut(s)	168, 249, 491, 570
ApeKI	GCWGC	9 cut(s)	65, 68, 242, 370, 563, 581, 584, 602, 885
ApoI	RAATTY	1 cut(s)	1014
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	5 cut(s)	73, 242, 436, 650, 914
AspS9I	GGNCC	2 cut(s)	249, 492
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	4 cut(s)	109, 686, 718, 910
BaeI	ACNNNNGTAYC	2 cut(s)	92, 125
BanII	GRGCYC	3 cut(s)	156, 387, 458
BbsI	GAAGAC	2 cut(s)	54, 209
Bbv12I	GWGCWC	3 cut(s)	458, 879, 956
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	9 cut(s)	77, 80, 254, 382, 550, 593, 596, 614, 872
BccI	CCATC	4 cut(s)	353, 370, 715, 745
BceAI	ACGGC	4 cut(s)	34, 181, 522, 661
BcgI	CGANNNNNNTGC	2 cut(s)	639, 673
BciT130I	CCWGG	2 cut(s)	247, 315
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	3 cut(s)	497, 636, 731
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	74
BglI	GCCNNNNNGGC	1 cut(s)	315
BlpI	GCTNAGC	1 cut(s)	381
Bme1390I	CCNGG	3 cut(s)	247, 315, 387
BmeRI	GACNNNNNGTC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	249, 492
BmiI	GGNNCC	5 cut(s)	93, 153, 366, 430, 702
BmrFI	CCNGG	3 cut(s)	247, 315, 387
BmsI	GCATC	1 cut(s)	659
BpiI	GAAGAC	2 cut(s)	54, 209
BpmI	CTGGAG	3 cut(s)	521, 779, 940
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	387
BsaHI	GRCGYC	3 cut(s)	51, 107, 279
BsaJI	CCNNGG	5 cut(s)	197, 246, 488, 567, 777
BsaWI	WCCGGW	3 cut(s)	94, 288, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 425
Bse118I	RCCGGY	3 cut(s)	88, 103, 703
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	247, 315
BseDI	CCNNGG	5 cut(s)	197, 246, 488, 567, 777
BseGI	GGATG	3 cut(s)	345, 717, 954
BseLI	CCNNNNNNNGG	2 cut(s)	148, 425
BseMII	CTCAG	3 cut(s)	29, 372, 585
BseXI	GCAGC	9 cut(s)	77, 80, 254, 382, 550, 593, 596, 614, 872
BseYI	CCCAGC	2 cut(s)	61, 863
BsgI	GTGCAG	1 cut(s)	992
Bsh1236I	CGCG	4 cut(s)	434, 470, 490, 914
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	4 cut(s)	170, 251, 493, 572
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	3 cut(s)	458, 879, 956
BslFI	GGGAC	2 cut(s)	251, 266
BslI	CCNNNNNNNGG	2 cut(s)	148, 425
BsmAI	GTCTC	3 cut(s)	497, 636, 731
BsmBI	CGTCTC	3 cut(s)	497, 636, 731
BsmFI	GGGAC	2 cut(s)	251, 266
BsnI	GGCC	4 cut(s)	170, 251, 493, 572
Bsp1286I	GDGCHC	5 cut(s)	156, 387, 458, 879, 956
Bsp13I	TCCGGA	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	174, 332, 389, 510
Bsp1720I	GCTNAGC	1 cut(s)	381
Bsp19I	CCATGG	1 cut(s)	777
BspANI	GGCC	4 cut(s)	170, 251, 493, 572
BspCNI	CTCAG	3 cut(s)	30, 373, 586
BspEI	TCCGGA	1 cut(s)	288
BspFNI	CGCG	4 cut(s)	434, 470, 490, 914
BspLI	GGNNCC	5 cut(s)	93, 153, 366, 430, 702
BspPI	GGATC	2 cut(s)	327, 397
BsrFI	RCCGGY	3 cut(s)	88, 103, 703
BssAI	RCCGGY	3 cut(s)	88, 103, 703
BssECI	CCNNGG	5 cut(s)	197, 246, 488, 567, 777
BssMI	GATC	4 cut(s)	174, 332, 389, 510
BssNI	GRCGYC	3 cut(s)	51, 107, 279
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	2 cut(s)	247, 315
Bst4CI	ACNGT	2 cut(s)	682, 881
Bst6I	CTCTTC	3 cut(s)	780, 789, 816
BstACI	GRCGYC	3 cut(s)	51, 107, 279
BstC8I	GCNNGC	6 cut(s)	90, 238, 311, 423, 427, 932
BstDEI	CTNAG	3 cut(s)	38, 381, 594
BstDSI	CCRYGG	3 cut(s)	197, 488, 777
BstF5I	GGATG	3 cut(s)	345, 717, 954
BstFNI	CGCG	4 cut(s)	434, 470, 490, 914
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	5 cut(s)	73, 242, 436, 650, 914
BstKTI	GATC	4 cut(s)	177, 335, 392, 513
BstMAI	GTCTC	3 cut(s)	497, 636, 731
BstMBI	GATC	4 cut(s)	174, 332, 389, 510
BstMCI	CGRYCG	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	247, 315
BstSCI	CCNGG	3 cut(s)	245, 313, 385
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	4 cut(s)	434, 470, 490, 914
BstV1I	GCAGC	9 cut(s)	77, 80, 254, 382, 550, 593, 596, 614, 872
BstV2I	GAAGAC	2 cut(s)	54, 209
BsuRI	GGCC	4 cut(s)	170, 251, 493, 572
BtgI	CCRYGG	3 cut(s)	197, 488, 777
BtsCI	GGATG	3 cut(s)	345, 717, 954
Cac8I	GCNNGC	6 cut(s)	90, 238, 311, 423, 427, 932
CaiI	CAGNNNCTG	1 cut(s)	885
CfoI	GCGC	5 cut(s)	73, 242, 436, 650, 914
Cfr10I	RCCGGY	3 cut(s)	88, 103, 703
Cfr13I	GGNCC	2 cut(s)	249, 492
Cfr42I	CCGCGG	1 cut(s)	491
CseI	GACGC	2 cut(s)	96, 459
Csp6I	GTAC	1 cut(s)	772
CviAII	CATG	2 cut(s)	778, 895
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	3 cut(s)	38, 381, 594
DpnI	GATC	4 cut(s)	176, 334, 391, 512
DpnII	GATC	4 cut(s)	174, 332, 389, 510
DrdI	GACNNNNNNGTC	1 cut(s)	284
DriI	GACNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	3 cut(s)	780, 789, 816
Eam1105I	GACNNNNNGTC	1 cut(s)	481
EarI	CTCTTC	3 cut(s)	780, 789, 816
EciI	GGCGGA	5 cut(s)	212, 466, 565, 623, 713
Ecl136II	GAGCTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	777
Eco147I	AGGCCT	2 cut(s)	170, 572
Eco24I	GRGCYC	3 cut(s)	156, 387, 458
Eco53kI	GAGCTC	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	245, 313
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	3 cut(s)	156, 387, 458
ErhI	CCWWGG	1 cut(s)	777
Esp3I	CGTCTC	3 cut(s)	497, 636, 731
FaeI	CATG	2 cut(s)	781, 898
FaiI	YATR	5 cut(s)	165, 779, 896, 906, 936
FaqI	GGGAC	2 cut(s)	251, 266
FatI	CATG	2 cut(s)	777, 894
FauI	CCCGC	3 cut(s)	93, 344, 923
FokI	GGATG	3 cut(s)	332, 724, 961
FriOI	GRGCYC	3 cut(s)	156, 387, 458
GlaI	GCGC	5 cut(s)	72, 241, 435, 649, 913
GsaI	CCCAGC	2 cut(s)	65, 867
GsuI	CTGGAG	3 cut(s)	521, 779, 940
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	4 cut(s)	170, 251, 493, 572
HgaI	GACGC	2 cut(s)	96, 459
HhaI	GCGC	5 cut(s)	73, 242, 436, 650, 914
Hin1I	GRCGYC	3 cut(s)	51, 107, 279
Hin1II	CATG	2 cut(s)	781, 898
Hin6I	GCGC	5 cut(s)	71, 240, 434, 648, 912
HinP1I	GCGC	5 cut(s)	71, 240, 434, 648, 912
HinfI	GANTC	1 cut(s)	482
HphI	GGTGA	4 cut(s)	109, 686, 718, 910
Hpy166II	GTNNAC	1 cut(s)	774
Hpy188I	TCNGA	6 cut(s)	123, 179, 277, 475, 661, 1031
Hpy188III	TCNNGA	4 cut(s)	229, 289, 957, 1019
Hpy8I	GTNNAC	1 cut(s)	774
Hpy99I	CGWCG	4 cut(s)	281, 475, 661, 691
HpyAV	CCTTC	3 cut(s)	626, 658, 832
HpyCH4III	ACNGT	2 cut(s)	682, 881
HpyCH4IV	ACGT	4 cut(s)	51, 206, 279, 686
HpyCH4V	TGCA	3 cut(s)	894, 973, 996
HpyF3I	CTNAG	3 cut(s)	38, 381, 594
HpySE526I	ACGT	4 cut(s)	51, 206, 279, 686
Hsp92I	GRCGYC	3 cut(s)	51, 107, 279
Hsp92II	CATG	2 cut(s)	781, 898
HspAI	GCGC	5 cut(s)	71, 240, 434, 648, 912
Kpn2I	TCCGGA	1 cut(s)	288
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	491
Kzo9I	GATC	4 cut(s)	174, 332, 389, 510
LmnI	GCTCC	9 cut(s)	97, 151, 364, 434, 453, 461, 700, 874, 959
Lsp1109I	GCAGC	9 cut(s)	77, 80, 254, 382, 550, 593, 596, 614, 872
LweI	GCATC	1 cut(s)	659
MaeII	ACGT	4 cut(s)	51, 206, 279, 686
MaeIII	GTNAC	2 cut(s)	350, 682
MalI	GATC	4 cut(s)	176, 334, 391, 512
MboI	GATC	4 cut(s)	174, 332, 389, 510
MboII	GAAGA	9 cut(s)	59, 214, 645, 797, 803, 806, 833, 860, 869
MhlI	GDGCHC	5 cut(s)	156, 387, 458, 879, 956
MluCI	AATT	2 cut(s)	1000, 1014
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	5 cut(s)	279, 300, 453, 639, 711
MroI	TCCGGA	1 cut(s)	288
MroNI	GCCGGC	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	206
MspA1I	CMGCKG	3 cut(s)	490, 587, 605
MspR9I	CCNGG	3 cut(s)	247, 315, 387
MvaI	CCWGG	2 cut(s)	247, 315
MvnI	CGCG	4 cut(s)	434, 470, 490, 914
NaeI	GCCGGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	4 cut(s)	174, 332, 389, 510
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	781, 898
NlaIV	GGNNCC	5 cut(s)	93, 153, 366, 430, 702
NmeAIII	GCCGAG	2 cut(s)	462, 592
PceI	AGGCCT	2 cut(s)	170, 572
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PdiI	GCCGGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	245, 313
PspFI	CCCAGC	2 cut(s)	61, 863
PspGI	CCWGG	2 cut(s)	245, 313
PspN4I	GGNNCC	5 cut(s)	93, 153, 366, 430, 702
PspPI	GGNCC	2 cut(s)	249, 492
PstNI	CAGNNNCTG	1 cut(s)	885
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
SacI	GAGCTC	1 cut(s)	458
SacII	CCGCGG	1 cut(s)	491
Sau3AI	GATC	4 cut(s)	174, 332, 389, 510
Sau96I	GGNCC	2 cut(s)	249, 492
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	3 cut(s)	247, 315, 387
SduI	GDGCHC	5 cut(s)	156, 387, 458, 879, 956
SfaNI	GCATC	1 cut(s)	659
SfcI	CTRYAG	1 cut(s)	319
Sfr303I	CCGCGG	1 cut(s)	491
SgrBI	CCGCGG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	1000, 1014
SseBI	AGGCCT	2 cut(s)	170, 572
SstI	GAGCTC	1 cut(s)	458
StuI	AGGCCT	2 cut(s)	170, 572
StyD4I	CCNGG	3 cut(s)	245, 313, 385
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	2 cut(s)	682, 881
TaiI	ACGT	4 cut(s)	54, 209, 282, 689
TaqI	TCGA	2 cut(s)	45, 480
TasI	AATT	2 cut(s)	1000, 1014
TseI	GCWGC	9 cut(s)	65, 68, 242, 370, 563, 581, 584, 602, 885
TspDTI	ATGAA	2 cut(s)	851, 994
TspGWI	ACGGA	3 cut(s)	338, 448, 755
XapI	RAATTY	1 cut(s)	1014
XmnI	GAANNNNTTC	1 cut(s)	206
ZraI	GACGTC	2 cut(s)	52, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.