Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Forward (+)

21873637 .. 21874707

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012738

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAGGTCACCGGAGGCTAACGCTTCTCGATCAGATGTCAGCAAGTGCGGACGGCAGAGCATTAGCCGGACTGAGCCTCGAAGACGTCTTATCCCCAGCAGCAGCAGCAGCAGCGCCCAAAGAACCCCCGCCGGCTCCGGCGATACCCGCCTCTATTTCGGGTCTGACCCTCCTCGACATTATCCGCAACGACGAGCCCAAATCGTACAAGGCCTTGATCGGAAAGAAAGACAAGAAGCCGTGGAAGACATTCAAAGACCGCCTCCGCCTCAAGAAAGCCAGCGCCGTCTGGGCCTCCACCGCCCAAGTCCCCACCTCCGACGTCCCCGTCCGGAACAACCACCACCACCGCCAGCCAGGCTACAGCCACAGCCGATCCCGCAACTCCATCCGTTACGTCACGCCGGAGCCGCAGCCGATGGCTGAGCCCGGAGCAAACGCCGACACCAGCAACCGGCCGCCGCAGGCCGCCGGCTCCGCGCCGAGTTTCAATCGGCGGAGCTCCGTGCGGTTCGCGTCGGACGTCGAGTCGCCGCCGCCCAAGCTGGAGACAGCGATCAGCGAGGAGAGGTCGCTGTCGGCGAGGGAGGCGGTGGCGGCACAAGAGGCTGCCGAGGCCGCTGCCGCCGCAGCGGCGGCTGAGGCTGCAGCGGCGGAGGAGAAAGCAGAGAGAGAAGGAGAGGAAGACGGTGCATCTTCGTCGGAGAAGGCTTCCGGTGAAACGGTAACGTCGCCGGAGCCGGAGCCGGTGAGGATGTCATTGATGGACTTGTTGGAGGAGACGGATAGGCAGATGGGGCTGGAGGGAGGGAGGTACACCATGGAAGAAGAGGAAGAAGAGGAGGAGGAGGAGGAAGAGGAAGTGGAGGAGATGGTGAAGGAGGAAGAACCGGAAGAAGGTGGGGGCGTGGAGCACAGTTGCTGCGTGTGCATGGTGAGGCATAAAGGCGCGGCATTTATCCCCTGCGGGCATACCTTTTGCCGGATGTGCTCCAGAGAGCTGTGGGTGCAGAGAGGGAACTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTGGACATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

357

Amino Acids

38.66

Weight (kDa)

4.87

Isoelectric Point (pI)

67.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	305 - 349	7.8e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	308 - 345	6.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AatII	GACGTC	3 cut(s)	90, 327, 528
AccII	CGCG	3 cut(s)	482, 518, 953
AccIII	TCCGGA	1 cut(s)	333
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	1053
AcyI	GRCGYC	3 cut(s)	87, 324, 525
AfaI	GTAC	2 cut(s)	209, 818
AfiI	CCNNNNNNNGG	3 cut(s)	456, 899, 984
AgsI	TTSAA	2 cut(s)	256, 493
AhdI	GACNNNNNGTC	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	504, 547, 1003
AluI	AGCT	3 cut(s)	504, 547, 1003
Alw21I	GWGCWC	3 cut(s)	506, 918, 995
Alw26I	GTCTC	2 cut(s)	545, 776
AlwI	GGATC	1 cut(s)	372
AlwNI	CAGNNNCTG	1 cut(s)	924
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	5 cut(s)	213, 294, 458, 468, 618
ApoI	RAATTY	1 cut(s)	1053
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	4 cut(s)	118, 287, 484, 953
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	4 cut(s)	731, 763, 889, 949
BanII	GRGCYC	3 cut(s)	201, 432, 506
BbsI	GAAGAC	3 cut(s)	90, 254, 693
Bbv12I	GWGCWC	3 cut(s)	506, 918, 995
BbvCI	CCTCAGC	1 cut(s)	642
BccI	CCATC	5 cut(s)	398, 415, 760, 790, 868
BceAI	ACGGC	3 cut(s)	70, 226, 272
BcgI	CGANNNNNNTGC	4 cut(s)	605, 639, 684, 718
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	545, 776
BfmI	CTRYAG	2 cut(s)	364, 648
BfoI	RGCGCY	2 cut(s)	119, 288
BglI	GCCNNNNNGGC	3 cut(s)	293, 360, 635
BlpI	GCTNAGC	1 cut(s)	426
Bme1390I	CCNGG	2 cut(s)	360, 432
BmeRI	GACNNNNNGTC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	5 cut(s)	138, 411, 478, 741, 747
BmrFI	CCNGG	2 cut(s)	360, 432
BmsI	GCATC	1 cut(s)	704
BpiI	GAAGAC	3 cut(s)	90, 254, 693
BpmI	CTGGAG	3 cut(s)	569, 824, 979
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	432
BsaHI	GRCGYC	3 cut(s)	87, 324, 525
BsaJI	CCNNGG	3 cut(s)	242, 615, 822
BsaWI	WCCGGW	4 cut(s)	12, 333, 716, 892
Bsc4I	CCNNNNNNNGG	3 cut(s)	456, 899, 984
Bse118I	RCCGGY	4 cut(s)	133, 456, 473, 748
BseAI	TCCGGA	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	242, 615, 822
BseGI	GGATG	3 cut(s)	390, 762, 993
BseLI	CCNNNNNNNGG	3 cut(s)	456, 899, 984
BseMII	CTCAG	3 cut(s)	65, 417, 633
BseRI	GAGGAG	9 cut(s)	164, 581, 674, 794, 857, 860, 863, 866, 884
BseX3I	CGGCCG	1 cut(s)	458
BseYI	CCCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	1031
Bsh1236I	CGCG	3 cut(s)	482, 518, 953
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	5 cut(s)	215, 296, 460, 470, 620
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	3 cut(s)	506, 918, 995
BslFI	GGGAC	2 cut(s)	296, 311
BslI	CCNNNNNNNGG	3 cut(s)	456, 899, 984
BsmAI	GTCTC	2 cut(s)	545, 776
BsmBI	CGTCTC	1 cut(s)	776
BsmFI	GGGAC	2 cut(s)	296, 311
BsnI	GGCC	5 cut(s)	215, 296, 460, 470, 620
Bsp1286I	GDGCHC	5 cut(s)	201, 432, 506, 918, 995
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	31, 219, 377, 558
Bsp1720I	GCTNAGC	1 cut(s)	426
Bsp19I	CCATGG	1 cut(s)	822
BspANI	GGCC	5 cut(s)	215, 296, 460, 470, 620
BspCNI	CTCAG	3 cut(s)	66, 418, 634
BspEI	TCCGGA	1 cut(s)	333
BspFNI	CGCG	3 cut(s)	482, 518, 953
BspLI	GGNNCC	5 cut(s)	138, 411, 478, 741, 747
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	372
BsrFI	RCCGGY	4 cut(s)	133, 456, 473, 748
BssAI	RCCGGY	4 cut(s)	133, 456, 473, 748
BssECI	CCNNGG	3 cut(s)	242, 615, 822
BssMI	GATC	4 cut(s)	31, 219, 377, 558
BssNI	GRCGYC	3 cut(s)	87, 324, 525
BssT1I	CCWWGG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	692, 727, 920
Bst6I	CTCTTC	3 cut(s)	825, 834, 852
BstACI	GRCGYC	3 cut(s)	87, 324, 525
BstC8I	GCNNGC	6 cut(s)	135, 283, 356, 468, 475, 971
BstDEI	CTNAG	3 cut(s)	74, 426, 642
BstDSI	CCRYGG	2 cut(s)	242, 822
BstEII	GGTNACC	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	390, 762, 993
BstFNI	CGCG	3 cut(s)	482, 518, 953
BstH2I	RGCGCY	2 cut(s)	119, 288
BstHHI	GCGC	4 cut(s)	118, 287, 484, 953
BstKTI	GATC	4 cut(s)	34, 222, 380, 561
BstMAI	GTCTC	2 cut(s)	545, 776
BstMBI	GATC	4 cut(s)	31, 219, 377, 558
BstMCI	CGRYCG	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	360
BstPI	GGTNACC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	358, 430
BstSFI	CTRYAG	2 cut(s)	364, 648
BstUI	CGCG	3 cut(s)	482, 518, 953
BstV2I	GAAGAC	3 cut(s)	90, 254, 693
BstZI	CGGCCG	1 cut(s)	458
BsuRI	GGCC	5 cut(s)	215, 296, 460, 470, 620
BtgI	CCRYGG	2 cut(s)	242, 822
BtsCI	GGATG	3 cut(s)	390, 762, 993
Cac8I	GCNNGC	6 cut(s)	135, 283, 356, 468, 475, 971
CaiI	CAGNNNCTG	1 cut(s)	924
CfoI	GCGC	4 cut(s)	118, 287, 484, 953
Cfr10I	RCCGGY	4 cut(s)	133, 456, 473, 748
Cfr13I	GGNCC	1 cut(s)	294
CseI	GACGC	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	208, 817
CviAII	CATG	2 cut(s)	823, 934
CviQI	GTAC	2 cut(s)	208, 817
DdeI	CTNAG	3 cut(s)	74, 426, 642
DpnI	GATC	4 cut(s)	33, 221, 379, 560
DpnII	GATC	4 cut(s)	31, 219, 377, 558
DrdI	GACNNNNNNGTC	1 cut(s)	329
DriI	GACNNNNNGTC	1 cut(s)	529
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	458
EagI	CGGCCG	1 cut(s)	458
Eam1104I	CTCTTC	3 cut(s)	825, 834, 852
Eam1105I	GACNNNNNGTC	1 cut(s)	529
EarI	CTCTTC	3 cut(s)	825, 834, 852
EciI	GGCGGA	3 cut(s)	257, 514, 671
Ecl136II	GAGCTC	1 cut(s)	504
EclXI	CGGCCG	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	822
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	3 cut(s)	201, 432, 506
Eco52I	CGGCCG	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	504
EcoO65I	GGTNACC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	822
EcoT38I	GRGCYC	3 cut(s)	201, 432, 506
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	776
FaeI	CATG	2 cut(s)	826, 937
FaiI	YATR	4 cut(s)	824, 935, 945, 975
FaqI	GGGAC	2 cut(s)	296, 311
FatI	CATG	2 cut(s)	822, 933
FauI	CCCGC	4 cut(s)	138, 157, 389, 962
FokI	GGATG	3 cut(s)	377, 769, 1000
FriOI	GRGCYC	3 cut(s)	201, 432, 506
GlaI	GCGC	4 cut(s)	117, 286, 483, 952
GsaI	CCCAGC	1 cut(s)	101
GsuI	CTGGAG	3 cut(s)	569, 824, 979
HaeII	RGCGCY	2 cut(s)	119, 288
HaeIII	GGCC	5 cut(s)	215, 296, 460, 470, 620
HgaI	GACGC	1 cut(s)	507
HhaI	GCGC	4 cut(s)	118, 287, 484, 953
Hin1I	GRCGYC	3 cut(s)	87, 324, 525
Hin1II	CATG	2 cut(s)	826, 937
Hin6I	GCGC	4 cut(s)	116, 285, 482, 951
HinP1I	GCGC	4 cut(s)	116, 285, 482, 951
HinfI	GANTC	1 cut(s)	530
HphI	GGTGA	4 cut(s)	731, 763, 889, 949
Hpy166II	GTNNAC	1 cut(s)	819
Hpy188I	TCNGA	7 cut(s)	36, 168, 224, 322, 523, 706, 1070
Hpy188III	TCNNGA	5 cut(s)	29, 274, 334, 996, 1058
Hpy8I	GTNNAC	1 cut(s)	819
Hpy99I	CGWCG	6 cut(s)	197, 326, 523, 530, 706, 736
HpyAV	CCTTC	4 cut(s)	671, 703, 874, 893
HpyCH4III	ACNGT	3 cut(s)	692, 727, 920
HpyCH4IV	ACGT	5 cut(s)	87, 324, 399, 525, 731
HpyCH4V	TGCA	5 cut(s)	650, 695, 933, 1012, 1035
HpyF3I	CTNAG	3 cut(s)	74, 426, 642
HpySE526I	ACGT	5 cut(s)	87, 324, 399, 525, 731
Hsp92I	GRCGYC	3 cut(s)	87, 324, 525
Hsp92II	CATG	2 cut(s)	826, 937
HspAI	GCGC	4 cut(s)	116, 285, 482, 951
Kpn2I	TCCGGA	1 cut(s)	333
KroI	GCCGGC	2 cut(s)	133, 473
KroNI	GCCGGC	2 cut(s)	135, 475
Kzo9I	GATC	4 cut(s)	31, 219, 377, 558
LweI	GCATC	1 cut(s)	704
MaeII	ACGT	5 cut(s)	87, 324, 399, 525, 731
MaeIII	GTNAC	4 cut(s)	8, 395, 400, 727
MalI	GATC	4 cut(s)	33, 221, 379, 560
MboI	GATC	4 cut(s)	31, 219, 377, 558
MhlI	GDGCHC	5 cut(s)	201, 432, 506, 918, 995
MluCI	AATT	2 cut(s)	1039, 1053
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	4 cut(s)	345, 501, 684, 756
MroI	TCCGGA	1 cut(s)	333
MroNI	GCCGGC	2 cut(s)	133, 473
MroXI	GAANNNNTTC	1 cut(s)	251
MspA1I	CMGCKG	3 cut(s)	623, 635, 653
MspR9I	CCNGG	2 cut(s)	360, 432
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	3 cut(s)	482, 518, 953
NaeI	GCCGGC	2 cut(s)	135, 475
NciI	CCSGG	1 cut(s)	432
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	4 cut(s)	31, 219, 377, 558
NgoMIV	GCCGGC	2 cut(s)	133, 473
NlaIII	CATG	2 cut(s)	826, 937
NlaIV	GGNNCC	5 cut(s)	138, 411, 478, 741, 747
NmeAIII	GCCGAG	2 cut(s)	510, 640
NmuCI	GTSAC	2 cut(s)	8, 400
PceI	AGGCCT	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	522, 581
PdiI	GCCGGC	2 cut(s)	135, 475
PdmI	GAANNNNTTC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
Psp124BI	GAGCTC	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	5 cut(s)	138, 411, 478, 741, 747
PspPI	GGNCC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	924
RsaI	GTAC	2 cut(s)	209, 818
RsaNI	GTAC	2 cut(s)	208, 817
SacI	GAGCTC	1 cut(s)	506
Sau3AI	GATC	4 cut(s)	31, 219, 377, 558
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	2 cut(s)	360, 432
SduI	GDGCHC	5 cut(s)	201, 432, 506, 918, 995
SfaNI	GCATC	1 cut(s)	704
SfcI	CTRYAG	2 cut(s)	364, 648
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	1039, 1053
SseBI	AGGCCT	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	358, 430
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	3 cut(s)	692, 727, 920
TaiI	ACGT	5 cut(s)	90, 327, 402, 528, 734
TaqI	TCGA	4 cut(s)	30, 81, 177, 528
TasI	AATT	2 cut(s)	1039, 1053
TseFI	GTSAC	2 cut(s)	8, 400
Tsp45I	GTSAC	2 cut(s)	8, 400
TspDTI	ATGAA	1 cut(s)	1033
TspGWI	ACGGA	3 cut(s)	383, 496, 800
XapI	RAATTY	1 cut(s)	1053
XmnI	GAANNNNTTC	1 cut(s)	251
ZraI	GACGTC	3 cut(s)	88, 325, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.