Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

46460757 .. 46461820

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAGGTCACCGGAGGCTAACGCTTTTCGAGCAGATGTCAGCAAGTGCGGACGGCAGAGCATTAGCCGGACTGAGCCTCGAAGACGTCTTATCCCCAGCAGCAGCGCCCAAAGAACCCCCGCCGGCTCCGGTGATACCGGCGTCTATTTCGGGTCTGACCCTCCTTGACATTATCCGCAACGAGGAGCCCAAATCGTATAAGGCCCTGATCGGAAAGAAAGACAAGAAGCCGTGGAAGACGTTCAAAGACCGCCTCCGCCTCAAGAAAGCCAGCGCCGCCTGGGCCTCCAACGCCCAAGTCCCCACCTCCGACGTCCCCGTCCGGAACAACCACCGCCAGCCAGGCTACAGCCACAGCCGATCCCGCAACTCCATCCGTTACATCACGCCGGAGCCGCAGCCGATGGCTGAGCCCGGATCAAACGCCGACACCAGCAACCGACCGCCGCAGGCAGGCTCCGCGCCGAGTTTCAATCGGCGGAGCTCCGTGCGGTTCGCGTCGGACATCGAGTCGCCGCGGCCCAAGCTGGAGACGGCGATCAGCGAGGAGAGGTCGCTGTCGGCGAGGGAGGCGGAGGAGGCAGAGAGAGAAGGAGAGGGAGACGGCGCATCTTCGTCGGAGAAGGCTTCCGGTGAAACGGTAACGTCGCCGGAGGCGGAGGCGGAGCCGGTGAGGATGTCGCTGATGGACTTGTTGGAGGAGACGGACAGGCAGATGGGGCTGGAGGGAGGGAGGTACACCATGGACGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAAGTGGAAGAGGTGGAGGAGGTGAAGGAGCACAGTTGCTGCGTGTGCATGGTGAGGCATAAAGGCGCGGCATTTATCCCCTGCGGGCATACCTTTTGCCGGATGTGCTCCAGAGAGTTGTGGGTGCAGAGAGGGAACTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTGGACATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

321

Amino Acids

35.57

Weight (kDa)

5.02

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	270 - 314	5.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	273 - 310	5.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	2 cut(s)	90, 318
AccII	CGCG	4 cut(s)	464, 500, 520, 848
AccIII	TCCGGA	1 cut(s)	324
AclWI	GGATC	2 cut(s)	357, 427
AcsI	RAATTY	1 cut(s)	948
AcyI	GRCGYC	3 cut(s)	87, 143, 315
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	3 cut(s)	184, 455, 879
AgsI	TTSAA	2 cut(s)	247, 475
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	281, 343
AluBI	AGCT	2 cut(s)	486, 529
AluI	AGCT	2 cut(s)	486, 529
Alw21I	GWGCWC	3 cut(s)	488, 813, 890
Alw26I	GTCTC	3 cut(s)	527, 597, 698
AlwI	GGATC	2 cut(s)	357, 427
AlwNI	CAGNNNCTG	1 cut(s)	819
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	3 cut(s)	204, 285, 521
ApeKI	GCWGC	4 cut(s)	101, 104, 400, 819
ApoI	RAATTY	1 cut(s)	948
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	5 cut(s)	109, 278, 466, 611, 848
AspS9I	GGNCC	3 cut(s)	205, 285, 522
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	5 cut(s)	145, 647, 685, 814, 844
BaeI	ACNNNNGTAYC	2 cut(s)	128, 161
BanII	GRGCYC	3 cut(s)	192, 417, 488
BbsI	GAAGAC	2 cut(s)	90, 245
Bbv12I	GWGCWC	3 cut(s)	488, 813, 890
BbvI	GCAGC	4 cut(s)	113, 116, 412, 806
BccI	CCATC	4 cut(s)	383, 400, 682, 712
BceAI	ACGGC	4 cut(s)	70, 217, 552, 622
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BciT130I	CCWGG	2 cut(s)	283, 345
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	3 cut(s)	527, 597, 698
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	2 cut(s)	110, 279
BglI	GCCNNNNNGGC	2 cut(s)	284, 345
BlpI	GCTNAGC	1 cut(s)	411
Bme1390I	CCNGG	3 cut(s)	283, 345, 417
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgT120I	GGNCC	3 cut(s)	205, 285, 522
BmiI	GGNNCC	5 cut(s)	129, 189, 396, 460, 669
BmrFI	CCNGG	3 cut(s)	283, 345, 417
BmsI	GCATC	1 cut(s)	620
BpiI	GAAGAC	2 cut(s)	90, 245
BpmI	CTGGAG	3 cut(s)	551, 746, 874
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	417
BsaHI	GRCGYC	3 cut(s)	87, 143, 315
BsaJI	CCNNGG	4 cut(s)	233, 282, 518, 744
BsaWI	WCCGGW	4 cut(s)	12, 130, 324, 632
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 455, 879
Bse118I	RCCGGY	3 cut(s)	124, 139, 670
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	283, 345
BseDI	CCNNGG	4 cut(s)	233, 282, 518, 744
BseGI	GGATG	3 cut(s)	375, 684, 888
BseLI	CCNNNNNNNGG	3 cut(s)	184, 455, 879
BseMII	CTCAG	2 cut(s)	65, 402
BseXI	GCAGC	4 cut(s)	113, 116, 412, 806
BseYI	CCCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	926
Bsh1236I	CGCG	4 cut(s)	464, 500, 520, 848
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	3 cut(s)	206, 287, 523
BsiEI	CGRYCG	1 cut(s)	446
BsiHKAI	GWGCWC	3 cut(s)	488, 813, 890
BslFI	GGGAC	2 cut(s)	287, 302
BslI	CCNNNNNNNGG	3 cut(s)	184, 455, 879
BsmAI	GTCTC	3 cut(s)	527, 597, 698
BsmBI	CGTCTC	3 cut(s)	527, 597, 698
BsmFI	GGGAC	2 cut(s)	287, 302
BsnI	GGCC	3 cut(s)	206, 287, 523
Bsp1286I	GDGCHC	5 cut(s)	192, 417, 488, 813, 890
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	210, 362, 419, 540
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	744
BspANI	GGCC	3 cut(s)	206, 287, 523
BspCNI	CTCAG	2 cut(s)	66, 403
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	4 cut(s)	464, 500, 520, 848
BspLI	GGNNCC	5 cut(s)	129, 189, 396, 460, 669
BspPI	GGATC	2 cut(s)	357, 427
BsrFI	RCCGGY	3 cut(s)	124, 139, 670
BssAI	RCCGGY	3 cut(s)	124, 139, 670
BssECI	CCNNGG	4 cut(s)	233, 282, 518, 744
BssMI	GATC	4 cut(s)	210, 362, 419, 540
BssNI	GRCGYC	3 cut(s)	87, 143, 315
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	2 cut(s)	283, 345
Bst4CI	ACNGT	2 cut(s)	643, 815
Bst6I	CTCTTC	3 cut(s)	747, 756, 783
BstACI	GRCGYC	3 cut(s)	87, 143, 315
BstC8I	GCNNGC	6 cut(s)	126, 274, 341, 453, 457, 866
BstDEI	CTNAG	2 cut(s)	74, 411
BstDSI	CCRYGG	3 cut(s)	233, 518, 744
BstEII	GGTNACC	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	375, 684, 888
BstFNI	CGCG	4 cut(s)	464, 500, 520, 848
BstH2I	RGCGCY	2 cut(s)	110, 279
BstHHI	GCGC	5 cut(s)	109, 278, 466, 611, 848
BstKTI	GATC	4 cut(s)	213, 365, 422, 543
BstMAI	GTCTC	3 cut(s)	527, 597, 698
BstMBI	GATC	4 cut(s)	210, 362, 419, 540
BstMCI	CGRYCG	1 cut(s)	446
BstNI	CCWGG	2 cut(s)	283, 345
BstPI	GGTNACC	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	281, 343, 415
BstSFI	CTRYAG	1 cut(s)	349
BstUI	CGCG	4 cut(s)	464, 500, 520, 848
BstV1I	GCAGC	4 cut(s)	113, 116, 412, 806
BstV2I	GAAGAC	2 cut(s)	90, 245
BsuRI	GGCC	3 cut(s)	206, 287, 523
BtgI	CCRYGG	3 cut(s)	233, 518, 744
BtsCI	GGATG	3 cut(s)	375, 684, 888
Cac8I	GCNNGC	6 cut(s)	126, 274, 341, 453, 457, 866
CaiI	CAGNNNCTG	1 cut(s)	819
CfoI	GCGC	5 cut(s)	109, 278, 466, 611, 848
Cfr10I	RCCGGY	3 cut(s)	124, 139, 670
Cfr13I	GGNCC	3 cut(s)	205, 285, 522
Cfr42I	CCGCGG	1 cut(s)	521
CseI	GACGC	2 cut(s)	132, 489
Csp6I	GTAC	1 cut(s)	739
CviAII	CATG	2 cut(s)	745, 829
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	2 cut(s)	74, 411
DpnI	GATC	4 cut(s)	212, 364, 421, 542
DpnII	GATC	4 cut(s)	210, 362, 419, 540
DrdI	GACNNNNNNGTC	1 cut(s)	320
DriI	GACNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	3 cut(s)	747, 756, 783
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	3 cut(s)	747, 756, 783
EciI	GGCGGA	5 cut(s)	248, 496, 590, 674, 680
Ecl136II	GAGCTC	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	3 cut(s)	192, 417, 488
Eco53kI	GAGCTC	1 cut(s)	486
Eco91I	GGTNACC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	281, 343
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	3 cut(s)	192, 417, 488
ErhI	CCWWGG	1 cut(s)	744
Esp3I	CGTCTC	3 cut(s)	527, 597, 698
FaeI	CATG	2 cut(s)	748, 832
FaiI	YATR	5 cut(s)	201, 746, 830, 840, 870
FaqI	GGGAC	2 cut(s)	287, 302
FatI	CATG	2 cut(s)	744, 828
FauI	CCCGC	3 cut(s)	129, 374, 857
FokI	GGATG	3 cut(s)	362, 691, 895
FriOI	GRGCYC	3 cut(s)	192, 417, 488
GlaI	GCGC	5 cut(s)	108, 277, 465, 610, 847
GsaI	CCCAGC	1 cut(s)	101
GsuI	CTGGAG	3 cut(s)	551, 746, 874
HaeII	RGCGCY	2 cut(s)	110, 279
HaeIII	GGCC	3 cut(s)	206, 287, 523
HgaI	GACGC	2 cut(s)	132, 489
HhaI	GCGC	5 cut(s)	109, 278, 466, 611, 848
Hin1I	GRCGYC	3 cut(s)	87, 143, 315
Hin1II	CATG	2 cut(s)	748, 832
Hin6I	GCGC	5 cut(s)	107, 276, 464, 609, 846
HinP1I	GCGC	5 cut(s)	107, 276, 464, 609, 846
HinfI	GANTC	1 cut(s)	512
HphI	GGTGA	5 cut(s)	145, 647, 685, 814, 844
Hpy166II	GTNNAC	1 cut(s)	741
Hpy188I	TCNGA	6 cut(s)	159, 215, 313, 505, 622, 965
Hpy188III	TCNNGA	4 cut(s)	265, 325, 891, 953
Hpy8I	GTNNAC	1 cut(s)	741
Hpy99I	CGWCG	4 cut(s)	317, 505, 622, 652
HpyAV	CCTTC	3 cut(s)	587, 619, 799
HpyCH4III	ACNGT	2 cut(s)	643, 815
HpyCH4IV	ACGT	4 cut(s)	87, 242, 315, 647
HpyCH4V	TGCA	3 cut(s)	828, 907, 930
HpyF3I	CTNAG	2 cut(s)	74, 411
HpySE526I	ACGT	4 cut(s)	87, 242, 315, 647
Hsp92I	GRCGYC	3 cut(s)	87, 143, 315
Hsp92II	CATG	2 cut(s)	748, 832
HspAI	GCGC	5 cut(s)	107, 276, 464, 609, 846
Kpn2I	TCCGGA	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
KspI	CCGCGG	1 cut(s)	521
Kzo9I	GATC	4 cut(s)	210, 362, 419, 540
LmnI	GCTCC	9 cut(s)	133, 187, 394, 464, 483, 491, 667, 808, 893
Lsp1109I	GCAGC	4 cut(s)	113, 116, 412, 806
LweI	GCATC	1 cut(s)	620
MaeII	ACGT	4 cut(s)	87, 242, 315, 647
MaeIII	GTNAC	3 cut(s)	8, 380, 643
MalI	GATC	4 cut(s)	212, 364, 421, 542
MboI	GATC	4 cut(s)	210, 362, 419, 540
MboII	GAAGA	7 cut(s)	95, 250, 606, 764, 770, 773, 800
MhlI	GDGCHC	5 cut(s)	192, 417, 488, 813, 890
MluCI	AATT	2 cut(s)	934, 948
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	5 cut(s)	315, 336, 483, 600, 678
MroI	TCCGGA	1 cut(s)	324
MroNI	GCCGGC	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	520
MspR9I	CCNGG	3 cut(s)	283, 345, 417
MvaI	CCWGG	2 cut(s)	283, 345
MvnI	CGCG	4 cut(s)	464, 500, 520, 848
NaeI	GCCGGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	4 cut(s)	210, 362, 419, 540
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	748, 832
NlaIV	GGNNCC	5 cut(s)	129, 189, 396, 460, 669
NmeAIII	GCCGAG	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	563
PdiI	GCCGGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	242
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	281, 343
PspEI	GGTNACC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	281, 343
PspN4I	GGNNCC	5 cut(s)	129, 189, 396, 460, 669
PspPI	GGNCC	3 cut(s)	205, 285, 522
PstNI	CAGNNNCTG	1 cut(s)	819
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
SacI	GAGCTC	1 cut(s)	488
SacII	CCGCGG	1 cut(s)	521
Sau3AI	GATC	4 cut(s)	210, 362, 419, 540
Sau96I	GGNCC	3 cut(s)	205, 285, 522
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	283, 345, 417
SduI	GDGCHC	5 cut(s)	192, 417, 488, 813, 890
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	1 cut(s)	349
Sfr303I	CCGCGG	1 cut(s)	521
SgrBI	CCGCGG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	934, 948
SstI	GAGCTC	1 cut(s)	488
StyD4I	CCNGG	3 cut(s)	281, 343, 415
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	2 cut(s)	643, 815
TaiI	ACGT	4 cut(s)	90, 245, 318, 650
TaqI	TCGA	3 cut(s)	30, 81, 510
TasI	AATT	2 cut(s)	934, 948
TauI	GCSGC	6 cut(s)	281, 400, 451, 520, 523, 851
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	4 cut(s)	101, 104, 400, 819
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	928
TspGWI	ACGGA	3 cut(s)	368, 478, 722
XapI	RAATTY	1 cut(s)	948
XmnI	GAANNNNTTC	1 cut(s)	242
ZraI	GACGTC	2 cut(s)	88, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.