Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

2029855 .. 2031942

Gene Structure 2088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCTTCGAAAGACAAGAAACCGTCGAAGCCATCGAGTAGTCGTGGTGGAATCCGAACTCTTTCCGATCTTAACCGTAGGTCTGGTCCTGACTCCGACAGTGATTCCGATGGTCCACAAGAATACTACACAGGTGGTGAGAAAAGTGGTATGTTAGTTCAAGATCCATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAACTAGGAGCTGTAGAAGGACCTCTTGAGCCACCTCCGAGTTCCAGGAGTTTCACTGGAACTGGTAGATTGCTTTCTGGTGAAAATGTGCCTACTGGTAATCAACAGCCTGAGCCTGTTGTTCACAACATTGTTTTCTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAATGCATCGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCCGATAGAAGAGCTCCGGTTCATGTCAACTTGATGCGAAAGGAAGAGAAATGCCCTGAAAGACAGAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAATGAAGGTAGCGGAAGTAGCTCACCTGTGGCTCCAGACTCCGCTCCCATTCCCATCCAAACCGAACCAGCACCATCTCAAAGTCTTGTAATAGATGAAACCGTTCCAACCACATCGATACAGCTTAGACTAGCGGATGGGACACGTCTGGTGGCTAAGTTCAATCACCATCACACGGTCAACGACATTCGCGGTTTCATTGACTCATCTCGACCTGGAGCCTCGTTGAACTACCAGCTTCAGACAATGGGGTTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATTGAAGAAGCTGGTCTCGCCAACTCTGTTGTTCTTCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

303

Amino Acids

32.9

Weight (kDa)

5.66

Isoelectric Point (pI)

62.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	114 - 187	4.6e-25	SEP domain
UBX	PF00789	226 - 302	2.3e-21	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	620
AccII	CGCG	1 cut(s)	768
AciI	CCGC	4 cut(s)	588, 618, 710, 768
AclWI	GGATC	2 cut(s)	158, 392
AcsI	RAATTY	1 cut(s)	905
AcuI	CTGAAG	2 cut(s)	800, 884
AfiI	CCNNNNNNNGG	1 cut(s)	751
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	161, 739, 805, 869
AjiI	CACGTC	1 cut(s)	722
AjnI	CCWGG	2 cut(s)	254, 790
AluBI	AGCT	8 cut(s)	206, 221, 454, 476, 597, 700, 814, 875
AluI	AGCT	8 cut(s)	206, 221, 454, 476, 597, 700, 814, 875
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	884
AlwI	GGATC	2 cut(s)	158, 392
Ama87I	CYCGRG	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	905
Asp700I	GAANNNNTTC	2 cut(s)	61, 678
AspS9I	GGNCC	4 cut(s)	86, 113, 230, 377
AsuHPI	GGTGA	4 cut(s)	149, 302, 591, 734
AsuII	TTCGAA	2 cut(s)	8, 430
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	4 cut(s)	86, 113, 230, 377
BaeGI	GKGCMC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	478
BccI	CCATC	8 cut(s)	40, 104, 175, 368, 638, 658, 707, 753
BciT130I	CCWGG	2 cut(s)	256, 792
BcoDI	GTCTC	1 cut(s)	884
BfaI	CTAG	5 cut(s)	207, 215, 566, 707, 910
BfmI	CTRYAG	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	256, 792
Bme18I	GGWCC	4 cut(s)	86, 113, 230, 377
BmeT110I	CYCGRG	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	722
BmgT120I	GGNCC	4 cut(s)	86, 113, 230, 377
BmiI	GGNNCC	3 cut(s)	609, 796, 830
BmrFI	CCNGG	2 cut(s)	256, 792
BmsI	GCATC	2 cut(s)	419, 486
BpmI	CTGGAG	2 cut(s)	594, 813
Bpu10I	CCTNAGC	2 cut(s)	321, 837
Bpu14I	TTCGAA	2 cut(s)	8, 430
BpuEI	CTTGAG	2 cut(s)	257, 476
Bsa29I	ATCGAT	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	884
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse1I	ACTGG	3 cut(s)	271, 277, 310
Bse3DI	GCAATG	1 cut(s)	583
BseBI	CCWGG	2 cut(s)	256, 792
BseCI	ATCGAT	1 cut(s)	692
BseGI	GGATG	3 cut(s)	400, 630, 718
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	4 cut(s)	312, 393, 429, 872
BseNI	ACTGG	3 cut(s)	271, 277, 310
BseSI	GKGCMC	1 cut(s)	446
Bsh1236I	CGCG	1 cut(s)	768
BshVI	ATCGAT	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmAI	GTCTC	1 cut(s)	884
BsmFI	GGGAC	1 cut(s)	730
BsmI	GAATGC	2 cut(s)	412, 426
Bso31I	GGTCTC	1 cut(s)	884
BsoBI	CYCGRG	1 cut(s)	419
Bsp119I	TTCGAA	2 cut(s)	8, 430
Bsp1286I	GDGCHC	2 cut(s)	446, 478
Bsp143I	GATC	4 cut(s)	67, 163, 397, 850
BspACI	CCGC	4 cut(s)	588, 618, 710, 768
BspCNI	CTCAG	4 cut(s)	313, 394, 430, 871
BspDI	ATCGAT	1 cut(s)	692
BspFNI	CGCG	1 cut(s)	768
BspLI	GGNNCC	3 cut(s)	609, 796, 830
BspPI	GGATC	2 cut(s)	158, 392
BspQI	GCTCTTC	1 cut(s)	466
BspT104I	TTCGAA	2 cut(s)	8, 430
BspTNI	GGTCTC	1 cut(s)	884
BsrBI	CCGCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	583
BsrI	ACTGG	3 cut(s)	271, 277, 310
BssMI	GATC	4 cut(s)	67, 163, 397, 850
Bst2UI	CCWGG	2 cut(s)	256, 792
Bst4CI	ACNGT	5 cut(s)	24, 77, 101, 679, 754
Bst6I	CTCTTC	2 cut(s)	466, 501
BstBI	TTCGAA	2 cut(s)	8, 430
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	7 cut(s)	321, 402, 438, 701, 732, 837, 858
BstF5I	GGATG	3 cut(s)	400, 630, 718
BstFNI	CGCG	1 cut(s)	768
BstKTI	GATC	4 cut(s)	70, 166, 400, 853
BstMAI	GTCTC	1 cut(s)	884
BstMBI	GATC	4 cut(s)	67, 163, 397, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	594, 881
BstNI	CCWGG	2 cut(s)	256, 792
BstSCI	CCNGG	2 cut(s)	254, 790
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	1 cut(s)	768
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	692
BsuTUI	ATCGAT	1 cut(s)	692
BtrI	CACGTC	1 cut(s)	722
BtsCI	GGATG	3 cut(s)	400, 630, 718
BtsIMutI	CAGTG	2 cut(s)	106, 264
Cac8I	GCNNGC	1 cut(s)	462
Cfr13I	GGNCC	4 cut(s)	86, 113, 230, 377
ClaI	ATCGAT	1 cut(s)	692
CviAII	CATG	1 cut(s)	485
DdeI	CTNAG	7 cut(s)	321, 402, 438, 701, 732, 837, 858
DpnI	GATC	4 cut(s)	69, 165, 399, 852
DpnII	GATC	4 cut(s)	67, 163, 397, 850
Eam1104I	CTCTTC	2 cut(s)	466, 501
EarI	CTCTTC	2 cut(s)	466, 501
Ecl136II	GAGCTC	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	884
Eco47I	GGWCC	4 cut(s)	86, 113, 230, 377
Eco53kI	GAGCTC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	800, 884
Eco88I	CYCGRG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	254, 790
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	1 cut(s)	488
FaiI	YATR	2 cut(s)	152, 486
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	1 cut(s)	484
FokI	GGATG	3 cut(s)	407, 617, 725
FriOI	GRGCYC	1 cut(s)	478
FspBI	CTAG	5 cut(s)	207, 215, 566, 707, 910
GsuI	CTGGAG	2 cut(s)	594, 813
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	1 cut(s)	488
HincII	GTYRAC	2 cut(s)	490, 757
HindII	GTYRAC	2 cut(s)	490, 757
HinfI	GANTC	5 cut(s)	51, 92, 104, 614, 779
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	4 cut(s)	149, 302, 591, 734
Hpy166II	GTNNAC	4 cut(s)	116, 334, 490, 757
Hpy188I	TCNGA	9 cut(s)	56, 67, 97, 109, 249, 439, 819, 861, 903
Hpy188III	TCNNGA	8 cut(s)	89, 161, 236, 401, 419, 421, 611, 786
Hpy8I	GTNNAC	4 cut(s)	116, 334, 490, 757
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	221, 575
HpyCH4III	ACNGT	5 cut(s)	24, 77, 101, 679, 754
HpyCH4IV	ACGT	2 cut(s)	532, 721
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	594, 881
HpyF3I	CTNAG	7 cut(s)	321, 402, 438, 701, 732, 837, 858
HpySE526I	ACGT	2 cut(s)	532, 721
Hsp92II	CATG	1 cut(s)	488
Kzo9I	GATC	4 cut(s)	67, 163, 397, 850
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	5 cut(s)	218, 481, 613, 625, 794
LweI	GCATC	2 cut(s)	419, 486
MaeI	CTAG	5 cut(s)	207, 215, 566, 707, 910
MaeII	ACGT	2 cut(s)	532, 721
MalI	GATC	4 cut(s)	69, 165, 399, 852
MbiI	CCGCTC	1 cut(s)	620
MboI	GATC	4 cut(s)	67, 163, 397, 850
MboII	GAAGA	5 cut(s)	483, 518, 570, 881, 890
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	446, 478
MluCI	AATT	2 cut(s)	389, 905
MlyI	GAGTC	3 cut(s)	86, 608, 773
MmeI	TCCRAC	3 cut(s)	120, 535, 707
MnlI	CCTC	4 cut(s)	243, 255, 378, 808
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	2 cut(s)	61, 678
MseI	TTAA	2 cut(s)	72, 198
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	256, 792
Mva1269I	GAATGC	2 cut(s)	412, 426
MvaI	CCWGG	2 cut(s)	256, 792
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	2 cut(s)	594, 881
NdeII	GATC	4 cut(s)	67, 163, 397, 850
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	3 cut(s)	609, 796, 830
NsiI	ATGCAT	1 cut(s)	412
NspV	TTCGAA	2 cut(s)	8, 430
PaeR7I	CTCGAG	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	2 cut(s)	412, 426
PdmI	GAANNNNTTC	2 cut(s)	61, 678
PfeI	GAWTC	2 cut(s)	51, 104
PfoI	TCCNGGA	1 cut(s)	254
PleI	GAGTC	3 cut(s)	86, 608, 773
PpsI	GAGTC	3 cut(s)	86, 608, 773
PpuMI	RGGWCCY	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	254, 790
PspGI	CCWGG	2 cut(s)	254, 790
PspN4I	GGNNCC	3 cut(s)	609, 796, 830
PspPI	GGNCC	4 cut(s)	86, 113, 230, 377
PspPPI	RGGWCCY	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	478
SapI	GCTCTTC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	72, 198
Sau3AI	GATC	4 cut(s)	67, 163, 397, 850
Sau96I	GGNCC	4 cut(s)	86, 113, 230, 377
SchI	GAGTC	3 cut(s)	86, 608, 773
ScrFI	CCNGG	2 cut(s)	256, 792
SduI	GDGCHC	2 cut(s)	446, 478
SfaNI	GCATC	2 cut(s)	419, 486
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	419
SfuI	TTCGAA	2 cut(s)	8, 430
SinI	GGWCC	4 cut(s)	86, 113, 230, 377
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	3 cut(s)	236, 419, 455
SmoI	CTYRAG	3 cut(s)	236, 419, 455
Sse9I	AATT	2 cut(s)	389, 905
SsiI	CCGC	4 cut(s)	588, 618, 710, 768
SspMI	CTAG	5 cut(s)	207, 215, 566, 707, 910
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	254, 790
TaaI	ACNGT	5 cut(s)	24, 77, 101, 679, 754
TaiI	ACGT	2 cut(s)	535, 724
TaqI	TCGA	8 cut(s)	8, 26, 35, 170, 420, 430, 692, 787
TasI	AATT	2 cut(s)	389, 905
TfiI	GAWTC	2 cut(s)	51, 104
Tru1I	TTAA	2 cut(s)	72, 198
Tru9I	TTAA	2 cut(s)	72, 198
TscAI	CASTG	2 cut(s)	106, 271
TspDTI	ATGAA	5 cut(s)	473, 531, 594, 687, 763
TspRI	CASTG	2 cut(s)	106, 271
VpaK11BI	GGWCC	4 cut(s)	86, 113, 230, 377
XapI	RAATTY	1 cut(s)	905
XhoI	CTCGAG	1 cut(s)	419
XmnI	GAANNNNTTC	2 cut(s)	61, 678
XspI	CTAG	5 cut(s)	207, 215, 566, 707, 910
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.