Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Reverse (-)

40682005 .. 40686232

Gene Structure 4228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1326800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGTCGGAGGATAAGAAAAAGAGTCGAACCGGAGGAATCCGTACACTTTCCGATCTTAACCAGAGGTCTGGGGACTCGGACAGTGACTCCGATGGCCCTCCGGAGTACTACACTGGTGGCGAGAAAAGTGGAATGCTTGTCCAGGATCCTACAAAGGATAACGATGTGGATTCCATTTTTGATCAGGCAAGGGAGTTAGGAGCTACAGAGGGGCCTTTTGATCCTTCTAGTGCATCTTCAAGCTCCAGAAGCTTTGCTGGAACTGGTAGATTACTTTCTGGGGAAACTGTACAACCTACTCCTGTGCAGCCTGAGACTGTTGTTCACAACATCATTTTCTGGTCCAACGGTTTTACTATAAATGATGGCCCTTTAAGGCGGTTGGACGATCCTGAAAATGCATCTTTCTTAGAGAGCATAAAAAAATCTGAATGTCCAAAAGAGTTGGAACCTGCAGATAGAGGTACCTCAGTTCATGTTAATCTAATAAGGAGGAATGAAAAGTGCCCAGAACCGGTGAAGCGACATGTTCCATTTCAGGGTGTGGGAAGAACTCTAGGTAGCAGCTCTACTCCAGCAGCATCCGAGTCAATGACTGCATCAACTCCTCTCAACACTGCTCCAACCCCTTCTGCAGGCCTGGTTGTGGATGAAAAGTTGCCATCAACATCGGTTCAACTTAGGTTGGCTGATGGAACCCGCATCGTTGGACATTTTAACTACCACCATACCATCAGTGACATTCGCACTTTCATTGATGCATCAAGGCCTGAGGGTCCAAGAAATTATCACCTGCAGATTATGGGGTTCCCTCCCAAGCTCCTCAATGATCCGAGTCAAACAATTGAGCAGGCAGGCCTCGCCAACTCGGTTGTGATCCAGAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

298

Amino Acids

32.15

Weight (kDa)

5.33

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	112 - 185	4e-26	SEP domain
UBX	PF00789	221 - 296	4.2e-14	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	804
Acc36I	ACCTGC	2 cut(s)	463, 804
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	2 cut(s)	382, 703
AclWI	GGATC	6 cut(s)	143, 156, 218, 386, 827, 874
AfaI	GTAC	4 cut(s)	46, 110, 294, 469
AfiI	CCNNNNNNNGG	4 cut(s)	517, 542, 638, 649
AflIII	ACRYGT	1 cut(s)	529
AgeI	ACCGGT	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	243, 680
AjnI	CCWGG	2 cut(s)	144, 642
AluBI	AGCT	5 cut(s)	206, 246, 255, 570, 823
AluI	AGCT	5 cut(s)	206, 246, 255, 570, 823
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	6 cut(s)	143, 156, 218, 386, 827, 874
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	6 cut(s)	97, 215, 370, 640, 770, 859
ApeKI	GCWGC	3 cut(s)	310, 567, 581
AsiGI	ACCGGT	1 cut(s)	517
Asp718I	GGTACC	1 cut(s)	467
AspS9I	GGNCC	5 cut(s)	98, 215, 345, 371, 779
AsuHPI	GGTGA	2 cut(s)	532, 785
AvaII	GGWCC	2 cut(s)	345, 779
AxyI	CCTNAGG	1 cut(s)	774
BaeGI	GKGCMC	1 cut(s)	512
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	467
BbvI	GCAGC	3 cut(s)	322, 579, 593
BccI	CCATC	5 cut(s)	89, 362, 673, 689, 743
BciT130I	CCWGG	2 cut(s)	146, 644
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	231, 560
BfmI	CTRYAG	4 cut(s)	207, 456, 636, 797
BfuAI	ACCTGC	2 cut(s)	463, 804
BisI	GCNGC	3 cut(s)	311, 568, 582
BlsI	GCNGC	3 cut(s)	312, 569, 583
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	2 cut(s)	146, 644
Bme18I	GGWCC	2 cut(s)	345, 779
BmgT120I	GGNCC	5 cut(s)	98, 215, 345, 371, 779
BmiI	GGNNCC	7 cut(s)	150, 216, 453, 469, 700, 780, 812
BmrFI	CCNGG	2 cut(s)	146, 644
BmsI	GCATC	7 cut(s)	245, 413, 593, 611, 714, 751, 773
BpmI	CTGGAG	2 cut(s)	232, 561
BsaWI	WCCGGW	3 cut(s)	32, 103, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	517, 542, 638, 649
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	121, 271
Bse21I	CCTNAGG	1 cut(s)	774
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	146, 644
BseGI	GGATG	2 cut(s)	584, 658
BseLI	CCNNNNNNNGG	4 cut(s)	517, 542, 638, 649
BseMII	CTCAG	3 cut(s)	306, 486, 765
BseNI	ACTGG	2 cut(s)	121, 271
BseRI	GAGGAG	2 cut(s)	600, 815
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	3 cut(s)	322, 579, 593
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
BshNI	GGYRCC	1 cut(s)	467
BshTI	ACCGGT	1 cut(s)	517
BsiSI	CCGG	3 cut(s)	33, 104, 518
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	4 cut(s)	517, 542, 638, 649
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
BspACI	CCGC	2 cut(s)	382, 703
BspANI	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
BspCNI	CTCAG	3 cut(s)	307, 485, 766
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	7 cut(s)	150, 216, 453, 469, 700, 780, 812
BspMAI	CTGCAG	3 cut(s)	460, 640, 801
BspMI	ACCTGC	2 cut(s)	463, 804
BspPI	GGATC	6 cut(s)	143, 156, 218, 386, 827, 874
BspT107I	GGYRCC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	517
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	121, 271
BssAI	RCCGGY	1 cut(s)	517
BssMI	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
Bst2UI	CCWGG	2 cut(s)	146, 644
Bst4CI	ACNGT	4 cut(s)	86, 292, 322, 353
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	640, 855, 859
BstDEI	CTNAG	5 cut(s)	315, 412, 472, 683, 774
BstENI	CCTNNNNNAGG	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	584, 658
BstKTI	GATC	7 cut(s)	58, 151, 187, 226, 394, 835, 882
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 863
BstNI	CCWGG	2 cut(s)	146, 644
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	144, 642
BstSFI	CTRYAG	4 cut(s)	207, 456, 636, 797
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	3 cut(s)	322, 579, 593
BstX2I	RGATCY	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	774
BsuRI	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
BtsCI	GGATG	2 cut(s)	584, 658
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	4 cut(s)	91, 114, 618, 745
BveI	ACCTGC	2 cut(s)	463, 804
Cac8I	GCNNGC	3 cut(s)	640, 855, 859
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	5 cut(s)	98, 215, 345, 371, 779
Csp6I	GTAC	4 cut(s)	45, 109, 293, 468
CspAI	ACCGGT	1 cut(s)	517
CviAII	CATG	2 cut(s)	479, 530
CviQI	GTAC	4 cut(s)	45, 109, 293, 468
DdeI	CTNAG	5 cut(s)	315, 412, 472, 683, 774
DpnI	GATC	7 cut(s)	57, 150, 186, 225, 393, 834, 881
DpnII	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
Eco147I	AGGCCT	3 cut(s)	642, 772, 861
Eco47I	GGWCC	2 cut(s)	345, 779
Eco81I	CCTNAGG	1 cut(s)	774
EcoNI	CCTNNNNNAGG	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	144, 642
EcoT22I	ATGCAT	2 cut(s)	406, 766
FaeI	CATG	2 cut(s)	482, 533
FaiI	YATR	7 cut(s)	362, 422, 480, 531, 732, 806, 892
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	478, 529
FauI	CCCGC	1 cut(s)	710
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	311, 568, 582
FokI	GGATG	2 cut(s)	571, 665
Fsp4HI	GCNGC	3 cut(s)	311, 568, 582
FspBI	CTAG	2 cut(s)	231, 560
GluI	GCNGC	3 cut(s)	311, 568, 582
GsuI	CTGGAG	2 cut(s)	232, 561
HaeIII	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
HapII	CCGG	3 cut(s)	33, 104, 518
Hin1II	CATG	2 cut(s)	482, 533
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	8 cut(s)	5, 25, 39, 77, 89, 173, 590, 838
HpaII	CCGG	3 cut(s)	33, 104, 518
HphI	GGTGA	2 cut(s)	532, 785
Hpy166II	GTNNAC	2 cut(s)	47, 328
Hpy188I	TCNGA	7 cut(s)	10, 55, 82, 94, 433, 589, 837
Hpy188III	TCNNGA	4 cut(s)	104, 249, 395, 883
Hpy8I	GTNNAC	2 cut(s)	47, 328
HpyAV	CCTTC	2 cut(s)	237, 642
HpyCH4III	ACNGT	4 cut(s)	86, 292, 322, 353
HpyCH4V	TGCA	8 cut(s)	236, 310, 404, 458, 602, 638, 764, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 863
HpyF3I	CTNAG	5 cut(s)	315, 412, 472, 683, 774
Hsp92II	CATG	2 cut(s)	482, 533
Kpn2I	TCCGGA	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	471
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
LmnI	GCTCC	4 cut(s)	203, 251, 628, 828
Lsp1109I	GCAGC	3 cut(s)	322, 579, 593
LweI	GCATC	7 cut(s)	245, 413, 593, 611, 714, 751, 773
MaeI	CTAG	2 cut(s)	231, 560
MaeIII	GTNAC	2 cut(s)	86, 740
MalI	GATC	7 cut(s)	57, 150, 186, 225, 393, 834, 881
MboI	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
MboII	GAAGA	2 cut(s)	231, 564
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	3 cut(s)	787, 846, 887
MlyI	GAGTC	6 cut(s)	14, 34, 71, 83, 599, 847
MmeI	TCCRAC	5 cut(s)	366, 372, 429, 650, 691
Mph1103I	ATGCAT	2 cut(s)	406, 766
MroI	TCCGGA	1 cut(s)	103
MseI	TTAA	4 cut(s)	60, 377, 483, 720
MspI	CCGG	3 cut(s)	33, 104, 518
MspR9I	CCNGG	2 cut(s)	146, 644
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	2 cut(s)	146, 644
MwoI	GCNNNNNNNGC	2 cut(s)	252, 863
NdeII	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
NlaIII	CATG	2 cut(s)	482, 533
NlaIV	GGNNCC	7 cut(s)	150, 216, 453, 469, 700, 780, 812
NmuCI	GTSAC	2 cut(s)	86, 740
NsiI	ATGCAT	2 cut(s)	406, 766
NspI	RCATGY	1 cut(s)	533
PaqCI	CACCTGC	1 cut(s)	804
PceI	AGGCCT	3 cut(s)	642, 772, 861
PciI	ACATGT	1 cut(s)	529
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	39, 173
PfoI	TCCNGGA	1 cut(s)	144
PinAI	ACCGGT	1 cut(s)	517
PkrI	GCNGC	3 cut(s)	312, 569, 583
PleI	GAGTC	6 cut(s)	13, 33, 71, 83, 598, 846
PpsI	GAGTC	6 cut(s)	13, 33, 71, 83, 598, 846
PscI	ACATGT	1 cut(s)	529
Psp6I	CCWGG	2 cut(s)	144, 642
PspGI	CCWGG	2 cut(s)	144, 642
PspN4I	GGNNCC	7 cut(s)	150, 216, 453, 469, 700, 780, 812
PspPI	GGNCC	5 cut(s)	98, 215, 345, 371, 779
PstI	CTGCAG	3 cut(s)	460, 640, 801
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	4 cut(s)	46, 110, 294, 469
RsaNI	GTAC	4 cut(s)	45, 109, 293, 468
SaqAI	TTAA	4 cut(s)	60, 377, 483, 720
SatI	GCNGC	3 cut(s)	311, 568, 582
Sau3AI	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
Sau96I	GGNCC	5 cut(s)	98, 215, 345, 371, 779
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	6 cut(s)	14, 34, 71, 83, 599, 847
ScrFI	CCNGG	2 cut(s)	146, 644
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	7 cut(s)	245, 413, 593, 611, 714, 751, 773
SfcI	CTRYAG	4 cut(s)	207, 456, 636, 797
SinI	GGWCC	2 cut(s)	345, 779
Sse9I	AATT	3 cut(s)	787, 846, 887
SseBI	AGGCCT	3 cut(s)	642, 772, 861
SsiI	CCGC	2 cut(s)	382, 703
SspMI	CTAG	2 cut(s)	231, 560
StuI	AGGCCT	3 cut(s)	642, 772, 861
StyD4I	CCNGG	2 cut(s)	144, 642
TaaI	ACNGT	4 cut(s)	86, 292, 322, 353
TaqI	TCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	787, 846, 887
TatI	WGTACW	2 cut(s)	108, 292
TfiI	GAWTC	2 cut(s)	39, 173
Tru1I	TTAA	4 cut(s)	60, 377, 483, 720
Tru9I	TTAA	4 cut(s)	60, 377, 483, 720
TscAI	CASTG	4 cut(s)	91, 121, 625, 745
TseFI	GTSAC	2 cut(s)	86, 740
TseI	GCWGC	3 cut(s)	310, 567, 581
Tsp45I	GTSAC	2 cut(s)	86, 740
TspDTI	ATGAA	4 cut(s)	467, 516, 669, 745
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	4 cut(s)	91, 121, 625, 745
VpaK11BI	GGWCC	2 cut(s)	345, 779
XagI	CCTNNNNNAGG	1 cut(s)	636
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	2 cut(s)	231, 560
ZrmI	AGTACT	1 cut(s)	110
Zsp2I	ATGCAT	2 cut(s)	406, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.