Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Reverse (-)

46909581 .. 46913637

Gene Structure 4057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1352600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGTCGGAGGACAAAAAAAAGAGTCGAACCGGAGGAATCCGTACACTTTCCGATCTGAACCGGAGGTCTGCGGACTCGGACAGTGACTCCGATGGCCCTCCGGAGTACTACACTGGTGGCGAGAAAAGTGGAATGCTTGTCCAGGATCCTACAAAGGATAATGATGTGGATTCCATTTTTGATCAAGCAAGGGAGTTAGGAGCCACGGAGGGGCCTTTTGATCCTTCTAGTGCATCTTCAAGCTCAAGAAGCTTTGCGGGAACTGGTAGATTACTCTCTGGGGAAACTGTACAACCTACTCCTGCACAGCCTGAGACTGTTGTTCACAACATCATTTTCTGGTCTAACGGTTTCACTATAAATGATGGCCCCTTAAGGCGGCTGGACGATCCAGAAAATGCATCTTTCTTAGAGAGCATCAAAAAGTCTGAATGTCCAAAAGAGTTGGAGCCTGCAGATAGAAGTACCTCAGTTCATGTCAATCTAATAAGGAGGAATGAGAAGTGCCCGGAACTGGTGAAGCGACATGTTCCATTTCAGGGTGTGGGAAGAACTCTGGGTGGCAGCTCTACTCCAGCAGCATCTGAGCCAACGACTGCATCGACTTCTCTCAACACTGCTCCAACCCCCTCCGCAGGCCTGGTTGTGGATGAAAAGTTGCCATCAACATCGGTTCAACTTAGGTTGGCTGATGGGACCCGCATAGTTGGACATTTTAACTACCATCATACCATCAATGACGTTCGTGGCTTCATTGATACATCTAGGCCTGACGGTCCAAGGAATTATCACCTGCAGATTATGGGGTTCCCTCCCAAGCTCCTCAATGATCCGAGTCAAACAATTGAGCAGGCAGGCCTCGCCAATTCGGTTGTGATCCAGAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

298

Amino Acids

32.08

Weight (kDa)

5.55

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	112 - 185	7.7e-25	SEP domain
UBX	PF00789	221 - 296	1.1e-14	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	804
Acc36I	ACCTGC	1 cut(s)	804
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	5 cut(s)	74, 260, 382, 636, 703
AclWI	GGATC	6 cut(s)	143, 156, 218, 386, 827, 874
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	46, 110, 294, 469
AfiI	CCNNNNNNNGG	6 cut(s)	213, 381, 517, 542, 638, 649
AflII	CTTAAG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	243, 680
AjnI	CCWGG	2 cut(s)	144, 642
AluBI	AGCT	4 cut(s)	246, 255, 570, 823
AluI	AGCT	4 cut(s)	246, 255, 570, 823
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	6 cut(s)	143, 156, 218, 386, 827, 874
AlwNI	CAGNNNCTG	1 cut(s)	587
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	6 cut(s)	97, 215, 370, 640, 770, 859
ApeKI	GCWGC	2 cut(s)	567, 581
AspS9I	GGNCC	5 cut(s)	98, 215, 371, 699, 779
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	532, 785
AvaII	GGWCC	2 cut(s)	699, 779
BaeGI	GKGCMC	1 cut(s)	512
BamHI	GGATCC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	579, 593
BccI	CCATC	6 cut(s)	89, 362, 673, 689, 735, 743
BciT130I	CCWGG	2 cut(s)	146, 644
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	231, 768
BfmI	CTRYAG	2 cut(s)	456, 797
BfrI	CTTAAG	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	804
BisI	GCNGC	3 cut(s)	383, 568, 582
BlsI	GCNGC	3 cut(s)	384, 569, 583
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	3 cut(s)	146, 512, 644
Bme18I	GGWCC	2 cut(s)	699, 779
BmgT120I	GGNCC	5 cut(s)	98, 215, 371, 699, 779
BmiI	GGNNCC	8 cut(s)	150, 205, 216, 373, 453, 700, 701, 812
BmrFI	CCNGG	3 cut(s)	146, 512, 644
BmsI	GCATC	5 cut(s)	245, 413, 429, 593, 611
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	512
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	207, 782
BsaWI	WCCGGW	3 cut(s)	32, 63, 103
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	6 cut(s)	213, 381, 517, 542, 638, 649
Bse1I	ACTGG	3 cut(s)	121, 271, 522
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	146, 644
BseDI	CCNNGG	2 cut(s)	207, 782
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	6 cut(s)	213, 381, 517, 542, 638, 649
BseMII	CTCAG	3 cut(s)	306, 486, 579
BseNI	ACTGG	3 cut(s)	121, 271, 522
BseRI	GAGGAG	1 cut(s)	815
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	579, 593
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
BsiSI	CCGG	4 cut(s)	33, 64, 104, 512
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	6 cut(s)	213, 381, 517, 542, 638, 649
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	712
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
BspACI	CCGC	5 cut(s)	74, 260, 382, 636, 703
BspANI	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
BspCNI	CTCAG	3 cut(s)	307, 485, 580
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	8 cut(s)	150, 205, 216, 373, 453, 700, 701, 812
BspMAI	CTGCAG	2 cut(s)	460, 801
BspMI	ACCTGC	1 cut(s)	804
BspPI	GGATC	6 cut(s)	143, 156, 218, 386, 827, 874
BspTI	CTTAAG	1 cut(s)	376
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	3 cut(s)	121, 271, 522
BssECI	CCNNGG	2 cut(s)	207, 782
BssMI	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	782
Bst2UI	CCWGG	2 cut(s)	146, 644
Bst4CI	ACNGT	5 cut(s)	86, 292, 322, 353, 779
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	376
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	4 cut(s)	456, 640, 855, 859
BstDEI	CTNAG	5 cut(s)	315, 412, 472, 588, 683
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	658
BstKTI	GATC	7 cut(s)	58, 151, 187, 226, 394, 835, 882
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 863
BstNI	CCWGG	2 cut(s)	146, 644
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	3 cut(s)	144, 510, 642
BstSFI	CTRYAG	2 cut(s)	456, 797
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	579, 593
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	3 cut(s)	91, 114, 618
BveI	ACCTGC	1 cut(s)	804
Cac8I	GCNNGC	4 cut(s)	456, 640, 855, 859
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr13I	GGNCC	5 cut(s)	98, 215, 371, 699, 779
Csp6I	GTAC	4 cut(s)	45, 109, 293, 468
CviAII	CATG	2 cut(s)	479, 530
CviQI	GTAC	4 cut(s)	45, 109, 293, 468
DdeI	CTNAG	5 cut(s)	315, 412, 472, 588, 683
DpnI	GATC	7 cut(s)	57, 150, 186, 225, 393, 834, 881
DpnII	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
Eco130I	CCWWGG	1 cut(s)	782
Eco147I	AGGCCT	3 cut(s)	642, 772, 861
Eco47I	GGWCC	2 cut(s)	699, 779
EcoO109I	RGGNCCY	2 cut(s)	215, 699
EcoRII	CCWGG	2 cut(s)	144, 642
EcoT14I	CCWWGG	1 cut(s)	782
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	2 cut(s)	482, 533
FaiI	YATR	7 cut(s)	362, 480, 531, 707, 732, 806, 892
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	2 cut(s)	478, 529
FauI	CCCGC	2 cut(s)	253, 710
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	383, 568, 582
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	3 cut(s)	383, 568, 582
FspBI	CTAG	2 cut(s)	231, 768
GluI	GCNGC	3 cut(s)	383, 568, 582
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	6 cut(s)	99, 217, 372, 642, 772, 861
HapII	CCGG	4 cut(s)	33, 64, 104, 512
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	482, 533
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	6 cut(s)	25, 39, 77, 89, 173, 838
HpaII	CCGG	4 cut(s)	33, 64, 104, 512
HphI	GGTGA	2 cut(s)	532, 785
Hpy166II	GTNNAC	2 cut(s)	47, 328
Hpy188I	TCNGA	8 cut(s)	10, 55, 60, 82, 94, 433, 589, 837
Hpy188III	TCNNGA	4 cut(s)	104, 249, 395, 883
Hpy8I	GTNNAC	2 cut(s)	47, 328
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	5 cut(s)	86, 292, 322, 353, 779
HpyCH4IV	ACGT	1 cut(s)	744
HpyCH4V	TGCA	6 cut(s)	236, 308, 404, 458, 602, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 863
HpyF3I	CTNAG	5 cut(s)	315, 412, 472, 588, 683
HpySE526I	ACGT	1 cut(s)	744
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	482, 533
KflI	GGGWCCC	1 cut(s)	699
Kpn2I	TCCGGA	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
LmnI	GCTCC	4 cut(s)	203, 451, 628, 828
Lsp1109I	GCAGC	2 cut(s)	579, 593
LweI	GCATC	5 cut(s)	245, 413, 429, 593, 611
MaeI	CTAG	2 cut(s)	231, 768
MaeII	ACGT	1 cut(s)	744
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	7 cut(s)	57, 150, 186, 225, 393, 834, 881
MboI	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
MboII	GAAGA	2 cut(s)	231, 564
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	4 cut(s)	787, 846, 868, 887
MlyI	GAGTC	4 cut(s)	34, 71, 83, 847
MmeI	TCCRAC	3 cut(s)	429, 650, 691
Mph1103I	ATGCAT	1 cut(s)	406
MroI	TCCGGA	1 cut(s)	103
MseI	TTAA	2 cut(s)	377, 720
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	4 cut(s)	33, 64, 104, 512
MspR9I	CCNGG	3 cut(s)	146, 512, 644
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	2 cut(s)	146, 644
MwoI	GCNNNNNNNGC	2 cut(s)	252, 863
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
NlaIII	CATG	2 cut(s)	482, 533
NlaIV	GGNNCC	8 cut(s)	150, 205, 216, 373, 453, 700, 701, 812
NmuCI	GTSAC	1 cut(s)	86
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	533
PaqCI	CACCTGC	1 cut(s)	804
PceI	AGGCCT	3 cut(s)	642, 772, 861
PciI	ACATGT	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	602
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	39, 173
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	384, 569, 583
PleI	GAGTC	4 cut(s)	33, 71, 83, 846
PpsI	GAGTC	4 cut(s)	33, 71, 83, 846
PpuMI	RGGWCCY	1 cut(s)	699
PscI	ACATGT	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	699
Psp6I	CCWGG	2 cut(s)	144, 642
PspGI	CCWGG	2 cut(s)	144, 642
PspN4I	GGNNCC	8 cut(s)	150, 205, 216, 373, 453, 700, 701, 812
PspPI	GGNCC	5 cut(s)	98, 215, 371, 699, 779
PspPPI	RGGWCCY	1 cut(s)	699
PstI	CTGCAG	2 cut(s)	460, 801
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	4 cut(s)	46, 110, 294, 469
RsaNI	GTAC	4 cut(s)	45, 109, 293, 468
SaqAI	TTAA	2 cut(s)	377, 720
SatI	GCNGC	3 cut(s)	383, 568, 582
Sau3AI	GATC	7 cut(s)	55, 148, 184, 223, 391, 832, 879
Sau96I	GGNCC	5 cut(s)	98, 215, 371, 699, 779
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	4 cut(s)	34, 71, 83, 847
ScrFI	CCNGG	3 cut(s)	146, 512, 644
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	5 cut(s)	245, 413, 429, 593, 611
SfcI	CTRYAG	2 cut(s)	456, 797
SinI	GGWCC	2 cut(s)	699, 779
SmlI	CTYRAG	2 cut(s)	247, 376
SmoI	CTYRAG	2 cut(s)	247, 376
Sse9I	AATT	4 cut(s)	787, 846, 868, 887
SseBI	AGGCCT	3 cut(s)	642, 772, 861
SsiI	CCGC	5 cut(s)	74, 260, 382, 636, 703
SspMI	CTAG	2 cut(s)	231, 768
StuI	AGGCCT	3 cut(s)	642, 772, 861
StyD4I	CCNGG	3 cut(s)	144, 510, 642
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	5 cut(s)	86, 292, 322, 353, 779
TaiI	ACGT	1 cut(s)	747
TaqI	TCGA	2 cut(s)	28, 605
TasI	AATT	4 cut(s)	787, 846, 868, 887
TatI	WGTACW	2 cut(s)	108, 292
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	39, 173
Tru1I	TTAA	2 cut(s)	377, 720
Tru9I	TTAA	2 cut(s)	377, 720
TscAI	CASTG	3 cut(s)	91, 121, 625
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	567, 581
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	467, 669, 745
TspGWI	ACGGA	2 cut(s)	32, 224
TspRI	CASTG	3 cut(s)	91, 121, 625
Vha464I	CTTAAG	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	699, 779
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	2 cut(s)	231, 768
ZrmI	AGTACT	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.