Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

1106358 .. 1107960

Gene Structure 1603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG016900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCTCGCAAAGTGGATTCGATGTGGATTCGATCTTTGATCAAGCTAGGGAATTGGGAGCGATAGAGGGACCGTTTGATCCTTCTTCTGCTCCGCAGCAGTTCAAGACTGTTGTTCATAACGTCATTTTCTGGTCCGATGGTTTCAGTGTAAATGATGGCCCGTTGAGGCAGTTGGACGATCCTGAAAATGCACCGTTCTTAGAGTGCATCCGAAGATCTGACTGTCCAGGGGAGTTAGAACCAGGAGATGGAAGTACTGAAGTTCATGTCAATCTTAGAAGGCGGAACGAGAAATACCCGGGCCGAGTTGTGGATAAAAGTTTGCCAACCACATCAATTCAGCTTAGGTTTGCTGATGGCACCCGCATGATTGCACAATTTAACTACCATCACACAGTCAGTGACATACGCACCTTGGTCGACACATCTAGGCCCGGGGGTCCGAGTAATTATCAGTTGCAGGTGATGAAGGAGTTCCCTCCCAAAATCCTCAGTGATCCGACTCAAACAATAGAACAGGCAGGTCTTGCCAATTCGGTTGTGATCCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

186

Amino Acids

20.69

Weight (kDa)

5.05

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	43 - 101	2.3e-19	SEP domain
UBX	PF00789	110 - 185	1.9e-14	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	454
Acc36I	ACCTGC	2 cut(s)	454, 515
AccB1I	GGYRCC	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	3 cut(s)	95, 286, 367
AclWI	GGATC	4 cut(s)	74, 176, 494, 541
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	251, 313
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	229, 244
AluBI	AGCT	2 cut(s)	47, 346
AluI	AGCT	2 cut(s)	47, 346
AlwI	GGATC	4 cut(s)	74, 176, 494, 541
Ama87I	CYCGRG	2 cut(s)	301, 437
AoxI	GGCC	4 cut(s)	3, 160, 304, 434
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	554
Asp700I	GAANNNNTTC	1 cut(s)	476
AspS9I	GGNCC	6 cut(s)	71, 135, 161, 304, 435, 443
AsuC2I	CCSGG	4 cut(s)	302, 303, 438, 439
AsuHPI	GGTGA	1 cut(s)	478
AvaI	CYCGRG	2 cut(s)	301, 437
AvaII	GGWCC	3 cut(s)	71, 135, 443
BanI	GGYRCC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	5 cut(s)	134, 152, 245, 353, 399
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	2 cut(s)	231, 246
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	4 cut(s)	302, 303, 438, 439
BfaI	CTAG	3 cut(s)	48, 432, 559
BfuAI	ACCTGC	2 cut(s)	454, 515
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmcAI	AGTACT	1 cut(s)	259
Bme1390I	CCNGG	6 cut(s)	231, 246, 302, 303, 438, 439
Bme18I	GGWCC	3 cut(s)	71, 135, 443
BmeT110I	CYCGRG	2 cut(s)	301, 437
BmgT120I	GGNCC	6 cut(s)	71, 135, 161, 304, 435, 443
BmiI	GGNNCC	3 cut(s)	72, 364, 444
BmrFI	CCNGG	6 cut(s)	231, 246, 302, 303, 438, 439
BmsI	GCATC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	347
BpuMI	CCSGG	4 cut(s)	302, 303, 438, 439
BsaJI	CCNNGG	5 cut(s)	230, 301, 417, 437, 438
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 313
BseBI	CCWGG	2 cut(s)	231, 246
BseDI	CCNNGG	5 cut(s)	230, 301, 417, 437, 438
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	251, 313
BseMII	CTCAG	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	4 cut(s)	5, 162, 306, 436
BshNI	GGYRCC	1 cut(s)	362
BsiHKCI	CYCGRG	2 cut(s)	301, 437
BsiSI	CCGG	2 cut(s)	302, 438
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	251, 313
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	5, 162, 306, 436
BsoBI	CYCGRG	2 cut(s)	301, 437
Bsp143I	GATC	7 cut(s)	33, 40, 79, 181, 218, 499, 546
BspACI	CCGC	3 cut(s)	95, 286, 367
BspANI	GGCC	4 cut(s)	5, 162, 306, 436
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	72, 364, 444
BspMI	ACCTGC	2 cut(s)	454, 515
BspPI	GGATC	4 cut(s)	74, 176, 494, 541
BspT107I	GGYRCC	1 cut(s)	362
BssECI	CCNNGG	5 cut(s)	230, 301, 417, 437, 438
BssMI	GATC	7 cut(s)	33, 40, 79, 181, 218, 499, 546
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	231, 246
Bst4CI	ACNGT	5 cut(s)	75, 112, 198, 227, 400
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstDEI	CTNAG	4 cut(s)	202, 278, 347, 494
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	7 cut(s)	36, 43, 82, 184, 221, 502, 549
BstMBI	GATC	7 cut(s)	33, 40, 79, 181, 218, 499, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	2 cut(s)	231, 246
BstSCI	CCNGG	6 cut(s)	229, 244, 300, 301, 436, 437
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	5, 162, 306, 436
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	3 cut(s)	154, 409, 502
BveI	ACCTGC	2 cut(s)	454, 515
Cfr13I	GGNCC	6 cut(s)	71, 135, 161, 304, 435, 443
Cfr9I	CCCGGG	2 cut(s)	301, 437
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	2 cut(s)	269, 370
CviJI	RGCY	6 cut(s)	5, 47, 162, 306, 346, 436
CviKI_1	RGCY	6 cut(s)	5, 47, 162, 306, 346, 436
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	4 cut(s)	202, 278, 347, 494
DpnI	GATC	7 cut(s)	35, 42, 81, 183, 220, 501, 548
DpnII	GATC	7 cut(s)	33, 40, 79, 181, 218, 499, 546
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	71, 135, 443
Eco57I	CTGAAG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	301, 437
EcoRII	CCWGG	2 cut(s)	229, 244
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	2 cut(s)	272, 373
FaiI	YATR	4 cut(s)	120, 270, 371, 410
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	268, 369
FauI	CCCGC	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	3 cut(s)	48, 432, 559
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	4 cut(s)	5, 162, 306, 436
HapII	CCGG	2 cut(s)	302, 438
Hin1II	CATG	2 cut(s)	272, 373
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	3 cut(s)	18, 29, 505
HpaII	CCGG	2 cut(s)	302, 438
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	139, 215, 223, 447, 504
Hpy188III	TCNNGA	3 cut(s)	106, 185, 550
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	3 cut(s)	93, 276, 466
HpyCH4III	ACNGT	5 cut(s)	75, 112, 198, 227, 400
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	194, 210, 377, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	4 cut(s)	202, 278, 347, 494
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	272, 373
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	7 cut(s)	33, 40, 79, 181, 218, 499, 546
LmnI	GCTCC	2 cut(s)	59, 97
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	3 cut(s)	48, 432, 559
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	7 cut(s)	35, 42, 81, 183, 220, 501, 548
MboI	GATC	7 cut(s)	33, 40, 79, 181, 218, 499, 546
MboII	GAAGA	2 cut(s)	78, 228
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	6 cut(s)	53, 339, 380, 451, 535, 554
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	2 cut(s)	156, 527
MnlI	CCTC	5 cut(s)	16, 61, 162, 492, 503
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	2 cut(s)	302, 438
MspR9I	CCNGG	6 cut(s)	231, 246, 302, 303, 438, 439
MvaI	CCWGG	2 cut(s)	231, 246
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	4 cut(s)	302, 303, 438, 439
NdeII	GATC	7 cut(s)	33, 40, 79, 181, 218, 499, 546
NlaIII	CATG	2 cut(s)	272, 373
NlaIV	GGNNCC	3 cut(s)	72, 364, 444
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	18, 29
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp6I	CCWGG	2 cut(s)	229, 244
PspGI	CCWGG	2 cut(s)	229, 244
PspN4I	GGNNCC	3 cut(s)	72, 364, 444
PspPI	GGNCC	6 cut(s)	71, 135, 161, 304, 435, 443
PsrI	GAACNNNNNNTAC	2 cut(s)	281, 313
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	7 cut(s)	33, 40, 79, 181, 218, 499, 546
Sau96I	GGNCC	6 cut(s)	71, 135, 161, 304, 435, 443
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	6 cut(s)	231, 246, 302, 303, 438, 439
SetI	ASST	7 cut(s)	49, 126, 348, 353, 419, 468, 529
SfaNI	GCATC	1 cut(s)	219
SinI	GGWCC	3 cut(s)	71, 135, 443
SmaI	CCCGGG	2 cut(s)	303, 439
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	6 cut(s)	53, 339, 380, 451, 535, 554
SsiI	CCGC	3 cut(s)	95, 286, 367
SspMI	CTAG	3 cut(s)	48, 432, 559
StyD4I	CCNGG	6 cut(s)	229, 244, 300, 301, 436, 437
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	5 cut(s)	75, 112, 198, 227, 400
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	21, 32, 423
TasI	AATT	6 cut(s)	53, 339, 380, 451, 535, 554
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	18, 29
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	3 cut(s)	154, 409, 502
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	107, 257, 485
TspMI	CCCGGG	2 cut(s)	301, 437
TspRI	CASTG	3 cut(s)	154, 409, 502
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	3 cut(s)	71, 135, 443
XapI	RAATTY	1 cut(s)	554
XmaI	CCCGGG	2 cut(s)	301, 437
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	3 cut(s)	48, 432, 559
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.