Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006008.1

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

53495 .. 56643

Gene Structure 3149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006008.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggcctcgcaaagtggattcgatgtggattcgatctttgatcaagctagggaattgggagcgatagagggaccgtttgattcttcttctgctccgcagcagttcaagactgttgttcataacgtcattttctggtccgatggtttcagtgtaaatgatggcccgttgaggcagttggacgatcctgaaaatgcaccgttcttagagtgcatccgaagatctgactgtccaggggagttagaaccaggagatggaagtactgaagttcatgtcaatcttagaaggcggaacgagaaatacccgcagggcctagttgtggataaaagtttgccaaccacatcaattcagcttaggtttgctgatggcacccgcatgattgcacaatttaactaccatcacacagtcagtgacatacgcaccttggtcgacacatctaggcccgggggtccgagtaattatcagttgcaggtgatgaaggagttccctcccaaaatcctcagtgatccgactcaaacaatagaacaggcaggtcttgccaattcgaacgcgcagagagaagaagaacaaagaaaagcgagtcgatctctaccagccaaacgctgccggagctcccgccgctgcgttccggtccaggagaggatggtgatccggaatagcgaggttcttgcagaggtgtggtccagggatggcgaatggttgtttgatctcggaatgggtagaccgatttcgatctattcttcccagatcgggagtgagagcaagcgaggagaggcgtcgggctgtgatttgccggcgacaggttcttgcatcatcgctgcaaccggaatctgggcagtggctgagatttcgatctcatggcatagacgagcccggagagggtccgtttacgtcttgggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

299

Amino Acids

33.17

Weight (kDa)

6.02

Isoelectric Point (pI)

66.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	2 cut(s)	457, 518
AccB1I	GGYRCC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	2 cut(s)	426, 718
AccII	CGCG	1 cut(s)	548
AccIII	TCCGGA	1 cut(s)	648
AciI	CCGC	6 cut(s)	95, 286, 302, 370, 613, 616
AclWI	GGATC	3 cut(s)	176, 497, 640
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	773
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	6 cut(s)	251, 316, 747, 797, 828, 876
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	4 cut(s)	229, 244, 630, 680
AluBI	AGCT	3 cut(s)	47, 349, 609
AluI	AGCT	3 cut(s)	47, 349, 609
Alw21I	GWGCWC	1 cut(s)	611
AlwI	GGATC	3 cut(s)	176, 497, 640
AlwNI	CAGNNNCTG	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	648
AoxI	GGCC	4 cut(s)	3, 160, 307, 437
ApeKI	GCWGC	4 cut(s)	97, 600, 618, 815
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	9 cut(s)	71, 135, 161, 307, 438, 446, 628, 678, 879
AsuC2I	CCSGG	3 cut(s)	441, 442, 871
AsuHPI	GGTGA	2 cut(s)	481, 655
AsuII	TTCGAA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	6 cut(s)	71, 135, 446, 628, 678, 879
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	2 cut(s)	611, 871
Bbv12I	GWGCWC	1 cut(s)	611
BbvI	GCAGC	4 cut(s)	109, 587, 605, 802
BccI	CCATC	7 cut(s)	134, 152, 245, 356, 402, 634, 680
BcgI	CGANNNNNNTGC	4 cut(s)	406, 440, 647, 681
BciT130I	CCWGG	4 cut(s)	231, 246, 632, 682
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	3 cut(s)	441, 442, 871
BfaI	CTAG	3 cut(s)	48, 311, 435
BfuAI	ACCTGC	2 cut(s)	457, 518
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	5 cut(s)	98, 601, 616, 619, 816
BlsI	GCNGC	5 cut(s)	99, 602, 617, 620, 817
BmcAI	AGTACT	1 cut(s)	259
Bme1390I	CCNGG	7 cut(s)	231, 246, 441, 442, 632, 682, 871
Bme18I	GGWCC	6 cut(s)	71, 135, 446, 628, 678, 879
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	9 cut(s)	71, 135, 161, 307, 438, 446, 628, 678, 879
BmiI	GGNNCC	4 cut(s)	72, 367, 447, 880
BmrFI	CCNGG	7 cut(s)	231, 246, 441, 442, 632, 682, 871
BmsI	GCATC	2 cut(s)	219, 816
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
Bpu10I	CCTNAGC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	542
BpuMI	CCSGG	3 cut(s)	441, 442, 871
BsaBI	GATNNNNATC	3 cut(s)	644, 728, 848
BsaHI	GRCGYC	1 cut(s)	773
BsaJI	CCNNGG	5 cut(s)	230, 420, 440, 441, 681
BsaWI	WCCGGW	3 cut(s)	625, 648, 821
Bsc4I	CCNNNNNNNGG	6 cut(s)	251, 316, 747, 797, 828, 876
Bse118I	RCCGGY	1 cut(s)	790
Bse8I	GATNNNNATC	3 cut(s)	644, 728, 848
BseAI	TCCGGA	1 cut(s)	648
BseBI	CCWGG	4 cut(s)	231, 246, 632, 682
BseDI	CCNNGG	5 cut(s)	230, 420, 440, 441, 681
BseGI	GGATG	3 cut(s)	210, 645, 691
BseJI	GATNNNNATC	3 cut(s)	644, 728, 848
BseLI	CCNNNNNNNGG	6 cut(s)	251, 316, 747, 797, 828, 876
BseMII	CTCAG	2 cut(s)	511, 831
BseRI	GAGGAG	1 cut(s)	780
BseXI	GCAGC	4 cut(s)	109, 587, 605, 802
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	4 cut(s)	5, 162, 309, 439
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	611
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	7 cut(s)	441, 604, 626, 649, 791, 822, 871
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	6 cut(s)	251, 316, 747, 797, 828, 876
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	5, 162, 309, 439
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	611, 871
Bsp13I	TCCGGA	1 cut(s)	648
BspACI	CCGC	6 cut(s)	95, 286, 302, 370, 613, 616
BspANI	GGCC	4 cut(s)	5, 162, 309, 439
BspCNI	CTCAG	2 cut(s)	510, 832
BspEI	TCCGGA	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	4 cut(s)	72, 367, 447, 880
BspMI	ACCTGC	2 cut(s)	457, 518
BspPI	GGATC	3 cut(s)	176, 497, 640
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	790
BssAI	RCCGGY	1 cut(s)	790
BssECI	CCNNGG	5 cut(s)	230, 420, 440, 441, 681
BssNI	GRCGYC	1 cut(s)	773
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	4 cut(s)	231, 246, 632, 682
Bst4CI	ACNGT	5 cut(s)	75, 112, 198, 227, 403
BstACI	GRCGYC	1 cut(s)	773
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	761, 792
BstDEI	CTNAG	5 cut(s)	202, 278, 350, 497, 840
BstF5I	GGATG	3 cut(s)	210, 645, 691
BstFNI	CGCG	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 606, 615
BstNI	CCWGG	4 cut(s)	231, 246, 632, 682
BstSCI	CCNGG	7 cut(s)	229, 244, 439, 440, 630, 680, 869
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	4 cut(s)	109, 587, 605, 802
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	5, 162, 309, 439
BtgZI	GCGATG	1 cut(s)	796
BtsCI	GGATG	3 cut(s)	210, 645, 691
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	4 cut(s)	154, 412, 505, 840
BveI	ACCTGC	2 cut(s)	457, 518
Cac8I	GCNNGC	2 cut(s)	761, 792
CaiI	CAGNNNCTG	1 cut(s)	839
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	790
Cfr13I	GGNCC	9 cut(s)	71, 135, 161, 307, 438, 446, 628, 678, 879
Cfr9I	CCCGGG	1 cut(s)	440
CseI	GACGC	1 cut(s)	762
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	3 cut(s)	269, 373, 855
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	5 cut(s)	202, 278, 350, 497, 840
EciI	GGCGGA	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	2 cut(s)	611, 871
Eco47I	GGWCC	6 cut(s)	71, 135, 446, 628, 678, 879
Eco53kI	GAGCTC	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	4 cut(s)	229, 244, 630, 680
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	2 cut(s)	611, 871
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	272, 376, 858
FaiI	YATR	6 cut(s)	120, 270, 374, 413, 856, 861
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	3 cut(s)	268, 372, 854
FauI	CCCGC	3 cut(s)	309, 377, 620
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	2 cut(s)	426, 718
Fnu4HI	GCNGC	5 cut(s)	98, 601, 616, 619, 816
FokI	GGATG	3 cut(s)	197, 652, 698
FriOI	GRGCYC	2 cut(s)	611, 871
Fsp4HI	GCNGC	5 cut(s)	98, 601, 616, 619, 816
FspBI	CTAG	3 cut(s)	48, 311, 435
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	5 cut(s)	98, 601, 616, 619, 816
HaeIII	GGCC	4 cut(s)	5, 162, 309, 439
HapII	CCGG	7 cut(s)	441, 604, 626, 649, 791, 822, 871
HgaI	GACGC	1 cut(s)	762
HhaI	GCGC	1 cut(s)	550
Hin1I	GRCGYC	1 cut(s)	773
Hin1II	CATG	3 cut(s)	272, 376, 858
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	6 cut(s)	18, 29, 80, 508, 577, 825
HpaII	CCGG	7 cut(s)	441, 604, 626, 649, 791, 822, 871
HphI	GGTGA	2 cut(s)	481, 655
Hpy166II	GTNNAC	3 cut(s)	427, 719, 886
Hpy188I	TCNGA	6 cut(s)	139, 215, 223, 450, 507, 710
Hpy188III	TCNNGA	4 cut(s)	106, 185, 649, 748
Hpy8I	GTNNAC	3 cut(s)	427, 719, 886
Hpy99I	CGWCG	1 cut(s)	778
HpyAV	CCTTC	2 cut(s)	276, 469
HpyCH4III	ACNGT	5 cut(s)	75, 112, 198, 227, 403
HpyCH4IV	ACGT	2 cut(s)	123, 888
HpyCH4V	TGCA	7 cut(s)	194, 210, 380, 466, 668, 807, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 606, 615
HpyF3I	CTNAG	5 cut(s)	202, 278, 350, 497, 840
HpySE526I	ACGT	2 cut(s)	123, 888
Hsp92I	GRCGYC	1 cut(s)	773
Hsp92II	CATG	3 cut(s)	272, 376, 858
HspAI	GCGC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	648
KroI	GCCGGC	1 cut(s)	790
KroNI	GCCGGC	1 cut(s)	792
Ksp22I	TGATCA	1 cut(s)	40
LmnI	GCTCC	4 cut(s)	59, 97, 606, 614
Lsp1109I	GCAGC	4 cut(s)	109, 587, 605, 802
LweI	GCATC	2 cut(s)	219, 816
MaeI	CTAG	3 cut(s)	48, 311, 435
MaeII	ACGT	2 cut(s)	123, 888
MaeIII	GTNAC	1 cut(s)	407
MboII	GAAGA	6 cut(s)	75, 78, 228, 569, 572, 729
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	611, 871
MluCI	AATT	5 cut(s)	53, 342, 383, 454, 538
MlyI	GAGTC	2 cut(s)	502, 586
MmeI	TCCRAC	2 cut(s)	156, 530
MroI	TCCGGA	1 cut(s)	648
MroNI	GCCGGC	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	618
MspI	CCGG	7 cut(s)	441, 604, 626, 649, 791, 822, 871
MspR9I	CCNGG	7 cut(s)	231, 246, 441, 442, 632, 682, 871
MvaI	CCWGG	4 cut(s)	231, 246, 632, 682
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	3 cut(s)	533, 606, 615
NaeI	GCCGGC	1 cut(s)	792
NciI	CCSGG	3 cut(s)	441, 442, 871
NgoMIV	GCCGGC	1 cut(s)	790
NlaIII	CATG	3 cut(s)	272, 376, 858
NlaIV	GGNNCC	4 cut(s)	72, 367, 447, 880
NmuCI	GTSAC	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	542
PaqCI	CACCTGC	1 cut(s)	457
PdiI	GCCGGC	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	4 cut(s)	18, 29, 80, 825
PflMI	CCANNNNNTGG	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	5 cut(s)	99, 602, 617, 620, 817
PleI	GAGTC	2 cut(s)	502, 585
PpsI	GAGTC	2 cut(s)	502, 585
Psp124BI	GAGCTC	1 cut(s)	611
Psp6I	CCWGG	4 cut(s)	229, 244, 630, 680
PspGI	CCWGG	4 cut(s)	229, 244, 630, 680
PspN4I	GGNNCC	4 cut(s)	72, 367, 447, 880
PspPI	GGNCC	9 cut(s)	71, 135, 161, 307, 438, 446, 628, 678, 879
PsrI	GAACNNNNNNTAC	2 cut(s)	281, 313
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	611
SalI	GTCGAC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	5 cut(s)	98, 601, 616, 619, 816
Sau96I	GGNCC	9 cut(s)	71, 135, 161, 307, 438, 446, 628, 678, 879
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	2 cut(s)	502, 586
ScrFI	CCNGG	7 cut(s)	231, 246, 441, 442, 632, 682, 871
SduI	GDGCHC	2 cut(s)	611, 871
SfaNI	GCATC	2 cut(s)	219, 816
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	6 cut(s)	71, 135, 446, 628, 678, 879
SmaI	CCCGGG	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	53, 342, 383, 454, 538
SsiI	CCGC	6 cut(s)	95, 286, 302, 370, 613, 616
SspMI	CTAG	3 cut(s)	48, 311, 435
SstI	GAGCTC	1 cut(s)	611
StyD4I	CCNGG	7 cut(s)	229, 244, 439, 440, 630, 680, 869
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	5 cut(s)	75, 112, 198, 227, 403
TaiI	ACGT	2 cut(s)	126, 891
TaqI	TCGA	7 cut(s)	21, 32, 426, 542, 580, 728, 848
TaqII	GACCGA	1 cut(s)	736
TasI	AATT	5 cut(s)	53, 342, 383, 454, 538
TatI	WGTACW	1 cut(s)	257
TauI	GCSGC	1 cut(s)	618
TfiI	GAWTC	4 cut(s)	18, 29, 80, 825
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	4 cut(s)	154, 412, 505, 840
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	4 cut(s)	97, 600, 618, 815
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	107, 257, 488
TspGWI	ACGGA	1 cut(s)	871
TspMI	CCCGGG	1 cut(s)	440
TspRI	CASTG	4 cut(s)	154, 412, 505, 840
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	6 cut(s)	71, 135, 446, 628, 678, 879
XmaI	CCCGGG	1 cut(s)	440
XmiI	GTMKAC	2 cut(s)	426, 718
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	3 cut(s)	48, 311, 435
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.