Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

1212650 .. 1214595

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACGCGCTCAAAGCTAATCAGTAAAGTCAAGAATCGAGATCGCTCAATCTCTCTGGTTTCACAGATAGCAATGGCCTCAAAGGACAAGAAACCCTCGAAACCCCGAACCGGAGGCATCCGTACACTTTCCGATCTGAACCGGAGGTCCGCCGACTCCGACAGCGACTCCGATGCTCCCCAGGAGTATTACACCGGCGGCGAGAAAAGTGGAATGCTTGTTCAGGATCCTACCAAAGGCAACGATGTGGATTCGATCTTTGATCAAGCTAGGGAATTGGGAGCGGTGGAGGGACCGATTGATCCTTCTTCTGCATCCTCAAGCTCGAGGAGCTTTGCTGGAACCGGTAGATTACTATCGGGGGAGACTATACAGTCTGCTCCGCAGCAGCCCGAGACTGTTGTTCATAACATCATTTTCTGGTCCGATGGTTTCACTGTAAATGATGGCCCGTTGAGGCGGTTGGACGATCCTGAAAATGCACCGTTCTTAGAGAGCATCCGAAAATCTGAATGTCCAAGGGAGTTAGAACCAGAAGATAGAAGTACTGCAGTTCATGTCAATCTTATAAGGCGGAATGAGAAATACCCAGAAGTGGTGAAGCGTCAAGTTGCATTTCAGGGTGTTGGAAGAACTCTAGGTAGCAGCTCTGCACCAGTGGCATCTGAGCCAACCGCTTCAGCAACTCCACCAAGTACTGGTCCAACTCCATCCCCGGGCCTAGTTGTGGATGAAAGTTTGCCATCCACATCAGTTCAGCTTAGGTTAGCTGATGGCACCCGCATGATTGCACAATTTAACTACCATCACACCATCAGTGACATACGCACCTTTGTCAACACATCTAGGCCCGGCAGTCCGAGTAATTATCAGTTGCAGATGATGGGGTTCCCTCCCAAAATCCTTAATGATCCGACTCAAACAATAGAACAGGCCGGTCTTGCCAATTCGGTTGTGATCCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

324

Amino Acids

35.02

Weight (kDa)

6.46

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	138 - 211	3e-25	SEP domain
UBX	PF00789	248 - 322	3.8e-14	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AasI	GACNNNNNNGTC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	776
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccBSI	CCGCTC	1 cut(s)	284
AccII	CGCG	1 cut(s)	7
AciI	CCGC	8 cut(s)	150, 198, 284, 383, 460, 574, 675, 781
AclWI	GGATC	6 cut(s)	221, 234, 296, 464, 905, 952
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	3 cut(s)	124, 547, 697
AfiI	CCNNNNNNNGG	6 cut(s)	110, 236, 595, 698, 716, 727
AgeI	ACCGGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	180
AloI	GAACNNNNNNTCC	4 cut(s)	131, 163, 204, 236
AluBI	AGCT	7 cut(s)	16, 269, 324, 333, 648, 760, 770
AluI	AGCT	7 cut(s)	16, 269, 324, 333, 648, 760, 770
Alw26I	GTCTC	2 cut(s)	359, 389
AlwI	GGATC	6 cut(s)	221, 234, 296, 464, 905, 952
Ama87I	CYCGRG	3 cut(s)	325, 392, 715
AoxI	GGCC	5 cut(s)	75, 448, 718, 848, 933
ApeKI	GCWGC	3 cut(s)	385, 388, 645
ApoI	RAATTY	1 cut(s)	965
AsiGI	ACCGGT	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	7 cut(s)	147, 293, 423, 449, 701, 718, 849
AsuC2I	CCSGG	3 cut(s)	716, 717, 852
AsuHPI	GGTGA	1 cut(s)	610
AvaI	CYCGRG	3 cut(s)	325, 392, 715
AvaII	GGWCC	4 cut(s)	147, 293, 423, 701
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	776
BbvI	GCAGC	3 cut(s)	397, 400, 657
BccI	CCATC	8 cut(s)	422, 440, 718, 751, 767, 813, 821, 877
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	3 cut(s)	716, 717, 852
BcoDI	GTCTC	2 cut(s)	359, 389
BfaI	CTAG	5 cut(s)	270, 638, 722, 846, 970
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	4 cut(s)	199, 386, 389, 646
BlsI	GCNGC	4 cut(s)	200, 387, 390, 647
BmcAI	AGTACT	2 cut(s)	547, 697
Bme1390I	CCNGG	4 cut(s)	182, 716, 717, 852
Bme18I	GGWCC	4 cut(s)	147, 293, 423, 701
BmeT110I	CYCGRG	3 cut(s)	325, 392, 715
BmgT120I	GGNCC	7 cut(s)	147, 293, 423, 449, 701, 718, 849
BmiI	GGNNCC	5 cut(s)	228, 294, 343, 778, 890
BmrFI	CCNGG	4 cut(s)	182, 716, 717, 852
BmsI	GCATC	5 cut(s)	126, 163, 323, 507, 671
Bpu10I	CCTNAGC	1 cut(s)	761
BpuEI	CTTGAG	1 cut(s)	304
BpuMI	CCSGG	3 cut(s)	716, 717, 852
BsaBI	GATNNNNATC	1 cut(s)	355
BsaJI	CCNNGG	4 cut(s)	180, 518, 714, 715
BsaWI	WCCGGW	3 cut(s)	110, 141, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 236, 595, 698, 716, 727
Bse118I	RCCGGY	3 cut(s)	194, 344, 935
Bse1I	ACTGG	2 cut(s)	656, 703
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	4 cut(s)	180, 518, 714, 715
BseGI	GGATG	6 cut(s)	117, 314, 498, 710, 736, 743
BseJI	GATNNNNATC	1 cut(s)	355
BseLI	CCNNNNNNNGG	6 cut(s)	110, 236, 595, 698, 716, 727
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	656, 703
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	3 cut(s)	397, 400, 657
BsgI	GTGCAG	1 cut(s)	636
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	5 cut(s)	77, 450, 720, 850, 935
BshNI	GGYRCC	1 cut(s)	776
BshTI	ACCGGT	1 cut(s)	344
BsiHKCI	CYCGRG	3 cut(s)	325, 392, 715
BsiSI	CCGG	7 cut(s)	111, 142, 195, 345, 716, 852, 936
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	6 cut(s)	110, 236, 595, 698, 716, 727
BsmAI	GTCTC	2 cut(s)	359, 389
BsmFI	GGGAC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	5 cut(s)	77, 450, 720, 850, 935
BsoBI	CYCGRG	3 cut(s)	325, 392, 715
Bsp143I	GATC	9 cut(s)	40, 133, 226, 255, 262, 301, 469, 910, 957
BspACI	CCGC	8 cut(s)	150, 198, 284, 383, 460, 574, 675, 781
BspANI	GGCC	5 cut(s)	77, 450, 720, 850, 935
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	5 cut(s)	228, 294, 343, 778, 890
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	6 cut(s)	221, 234, 296, 464, 905, 952
BspT107I	GGYRCC	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	3 cut(s)	194, 344, 935
BsrI	ACTGG	2 cut(s)	656, 703
BssAI	RCCGGY	3 cut(s)	194, 344, 935
BssECI	CCNNGG	4 cut(s)	180, 518, 714, 715
BssMI	GATC	9 cut(s)	40, 133, 226, 255, 262, 301, 469, 910, 957
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	4 cut(s)	375, 400, 439, 486
BstDEI	CTNAG	3 cut(s)	490, 666, 761
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	6 cut(s)	117, 314, 498, 710, 736, 743
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	9 cut(s)	43, 136, 229, 258, 265, 304, 472, 913, 960
BstMAI	GTCTC	2 cut(s)	359, 389
BstMBI	GATC	9 cut(s)	40, 133, 226, 255, 262, 301, 469, 910, 957
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 330, 659, 941
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	4 cut(s)	180, 714, 715, 850
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	397, 400, 657
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	5 cut(s)	77, 450, 720, 850, 935
BtsCI	GGATG	6 cut(s)	117, 314, 498, 710, 736, 743
BtsIMutI	CAGTG	3 cut(s)	435, 663, 823
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	3 cut(s)	194, 344, 935
Cfr13I	GGNCC	7 cut(s)	147, 293, 423, 449, 701, 718, 849
Cfr9I	CCCGGG	1 cut(s)	715
CseI	GACGC	2 cut(s)	13, 593
Csp6I	GTAC	3 cut(s)	123, 546, 696
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	2 cut(s)	557, 784
CviQI	GTAC	3 cut(s)	123, 546, 696
DdeI	CTNAG	3 cut(s)	490, 666, 761
DpnI	GATC	9 cut(s)	42, 135, 228, 257, 264, 303, 471, 912, 959
DpnII	GATC	9 cut(s)	40, 133, 226, 255, 262, 301, 469, 910, 957
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EciI	GGCGGA	2 cut(s)	139, 589
Eco130I	CCWWGG	1 cut(s)	518
Eco47I	GGWCC	4 cut(s)	147, 293, 423, 701
Eco57I	CTGAAG	1 cut(s)	663
Eco88I	CYCGRG	3 cut(s)	325, 392, 715
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	2 cut(s)	560, 787
FaiI	YATR	6 cut(s)	371, 408, 558, 569, 785, 824
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	2 cut(s)	556, 783
FauI	CCCGC	1 cut(s)	788
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	199, 386, 389, 646
FokI	GGATG	6 cut(s)	104, 301, 485, 697, 730, 743
Fsp4HI	GCNGC	4 cut(s)	199, 386, 389, 646
FspBI	CTAG	5 cut(s)	270, 638, 722, 846, 970
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	4 cut(s)	199, 386, 389, 646
HaeIII	GGCC	5 cut(s)	77, 450, 720, 850, 935
HapII	CCGG	7 cut(s)	111, 142, 195, 345, 716, 852, 936
HgaI	GACGC	2 cut(s)	13, 593
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	560, 787
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HinfI	GANTC	5 cut(s)	34, 155, 167, 251, 916
HpaII	CCGG	7 cut(s)	111, 142, 195, 345, 716, 852, 936
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	2 cut(s)	125, 838
Hpy188III	TCNNGA	5 cut(s)	31, 38, 224, 473, 961
Hpy8I	GTNNAC	2 cut(s)	125, 838
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	4 cut(s)	375, 400, 439, 486
HpyCH4V	TGCA	7 cut(s)	314, 482, 551, 614, 653, 791, 877
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 330, 659, 941
HpyF3I	CTNAG	3 cut(s)	490, 666, 761
Hsp92II	CATG	2 cut(s)	560, 787
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	9 cut(s)	40, 133, 226, 255, 262, 301, 469, 910, 957
LmnI	GCTCC	4 cut(s)	181, 281, 330, 385
Lsp1109I	GCAGC	3 cut(s)	397, 400, 657
LweI	GCATC	5 cut(s)	126, 163, 323, 507, 671
MaeI	CTAG	5 cut(s)	270, 638, 722, 846, 970
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	9 cut(s)	42, 135, 228, 257, 264, 303, 471, 912, 959
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	9 cut(s)	40, 133, 226, 255, 262, 301, 469, 910, 957
MboII	GAAGA	3 cut(s)	300, 548, 642
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	5 cut(s)	275, 794, 865, 946, 965
MlyI	GAGTC	3 cut(s)	149, 161, 910
MmeI	TCCRAC	5 cut(s)	183, 444, 607, 728, 938
MnlI	CCTC	9 cut(s)	88, 106, 107, 138, 283, 321, 328, 450, 903
MseI	TTAA	2 cut(s)	798, 906
MslI	CAYNNNNRTG	1 cut(s)	782
MspI	CCGG	7 cut(s)	111, 142, 195, 345, 716, 852, 936
MspR9I	CCNGG	4 cut(s)	182, 716, 717, 852
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	4 cut(s)	13, 330, 659, 941
NciI	CCSGG	3 cut(s)	716, 717, 852
NdeII	GATC	9 cut(s)	40, 133, 226, 255, 262, 301, 469, 910, 957
NlaIII	CATG	2 cut(s)	560, 787
NlaIV	GGNNCC	5 cut(s)	228, 294, 343, 778, 890
NmuCI	GTSAC	1 cut(s)	818
PaeR7I	CTCGAG	1 cut(s)	325
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	34, 251
PflMI	CCANNNNNTGG	1 cut(s)	698
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	200, 387, 390, 647
PleI	GAGTC	3 cut(s)	149, 161, 910
PpsI	GAGTC	3 cut(s)	149, 161, 910
PsiI	TTATAA	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	5 cut(s)	228, 294, 343, 778, 890
PspPI	GGNCC	7 cut(s)	147, 293, 423, 449, 701, 718, 849
PspXI	VCTCGAGB	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	124, 547, 697
RsaNI	GTAC	3 cut(s)	123, 546, 696
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	2 cut(s)	798, 906
SatI	GCNGC	4 cut(s)	199, 386, 389, 646
Sau3AI	GATC	9 cut(s)	40, 133, 226, 255, 262, 301, 469, 910, 957
Sau96I	GGNCC	7 cut(s)	147, 293, 423, 449, 701, 718, 849
ScaI	AGTACT	2 cut(s)	547, 697
SchI	GAGTC	3 cut(s)	149, 161, 910
ScrFI	CCNGG	4 cut(s)	182, 716, 717, 852
SfaNI	GCATC	5 cut(s)	126, 163, 323, 507, 671
SfcI	CTRYAG	1 cut(s)	549
Sfr274I	CTCGAG	1 cut(s)	325
SgrAI	CRCCGGYG	1 cut(s)	194
SinI	GGWCC	4 cut(s)	147, 293, 423, 701
SlaI	CTCGAG	1 cut(s)	325
SmaI	CCCGGG	1 cut(s)	717
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	2 cut(s)	319, 325
SmoI	CTYRAG	2 cut(s)	319, 325
Sse9I	AATT	5 cut(s)	275, 794, 865, 946, 965
SsiI	CCGC	8 cut(s)	150, 198, 284, 383, 460, 574, 675, 781
SspMI	CTAG	5 cut(s)	270, 638, 722, 846, 970
StyD4I	CCNGG	4 cut(s)	180, 714, 715, 850
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	4 cut(s)	375, 400, 439, 486
TaqI	TCGA	4 cut(s)	37, 98, 254, 326
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	5 cut(s)	275, 794, 865, 946, 965
TatI	WGTACW	2 cut(s)	545, 695
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	34, 251
Tru1I	TTAA	2 cut(s)	798, 906
Tru9I	TTAA	2 cut(s)	798, 906
TscAI	CASTG	3 cut(s)	442, 663, 823
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	3 cut(s)	385, 388, 645
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	3 cut(s)	395, 545, 747
TspGWI	ACGGA	1 cut(s)	110
TspMI	CCCGGG	1 cut(s)	715
TspRI	CASTG	3 cut(s)	442, 663, 823
Van91I	CCANNNNNTGG	1 cut(s)	698
VpaK11BI	GGWCC	4 cut(s)	147, 293, 423, 701
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	965
XhoI	CTCGAG	1 cut(s)	325
XmaI	CCCGGG	1 cut(s)	715
XspI	CTAG	5 cut(s)	270, 638, 722, 846, 970
ZrmI	AGTACT	2 cut(s)	547, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.