Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

1195701 .. 1197428

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030990

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCCTCAAAGGACAACAAACCCTCGAAAAGTGGAATGCTCGTACAGGATCCTACCAAAGGCAACGATGTGGATTCGATCTTTGATCAAGCTAGGAAATTGGGAGCGCTAGAGGGACCGTTTGATCCTTCTTCTGCTCCGCAGCAGCCCAAGACTGTTGTTCATAACATCATTTTCTGGTCCGATGGTTTCAGTGTAAATGGTGGCCCGTTGAGGCAGTTGGACTATCCTGAAAATGCACCGTTCTTAGAGTGTATCCGAAAATCTGACTGTCCAAGGGAGTTAGAACCAGAAGATGGAAGTACTGAAGTTCATGTCAATCTTATAAGGCGGAACGAGAAATACCCGCAGGGCCTAGTTGTGGATGAAAGTCTGCCATCCACATCAATTCAGCTTAGGTTAGCTGATGGCACCCGCATGATTGCACAATTTAACTATTATCACACAATCAGTGACATACGCACCTTTGTCGACACATCTAGGCCCGGGAGTCCGAGTAATTATCAGTTGCAGGGGGGGTTCCCTCCCAAAATCCTCAGTGATCCGACTCAAACAATAGAACAGGCAGGTCTTGCCCGTTCGGTTGTGATCCAGATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

201

Amino Acids

22.15

Weight (kDa)

5.21

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	57 - 117	2.4e-18	SEP domain
UBX	PF00789	126 - 198	3.9e-15	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	4 cut(s)	140, 331, 347, 415
AclWI	GGATC	5 cut(s)	44, 57, 119, 536, 583
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	45, 304
AfeI	AGCGCT	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	59, 296, 361
AluBI	AGCT	3 cut(s)	92, 394, 404
AluI	AGCT	3 cut(s)	92, 394, 404
AlwI	GGATC	5 cut(s)	44, 57, 119, 536, 583
Ama87I	CYCGRG	1 cut(s)	485
Aor51HI	AGCGCT	1 cut(s)	108
AoxI	GGCC	4 cut(s)	3, 205, 352, 482
ApeKI	GCWGC	2 cut(s)	142, 145
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	5 cut(s)	116, 180, 206, 352, 483
AsuC2I	CCSGG	2 cut(s)	486, 487
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	116, 180
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	154, 157
BccI	CCATC	4 cut(s)	179, 290, 385, 401
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BciVI	GTATCC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	2 cut(s)	486, 487
BfaI	CTAG	5 cut(s)	93, 110, 356, 480, 601
BfoI	RGCGCY	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	143, 146
BlsI	GCNGC	2 cut(s)	144, 147
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	486, 487
Bme18I	GGWCC	2 cut(s)	116, 180
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	5 cut(s)	116, 180, 206, 352, 483
BmiI	GGNNCC	4 cut(s)	51, 117, 412, 521
BmrFI	CCNGG	2 cut(s)	486, 487
Bpu10I	CCTNAGC	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	486, 487
BsaJI	CCNNGG	2 cut(s)	275, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 296, 361
BseDI	CCNNGG	2 cut(s)	275, 485
BseGI	GGATG	2 cut(s)	370, 377
BseLI	CCNNNNNNNGG	3 cut(s)	59, 296, 361
BseMII	CTCAG	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	154, 157
BshFI	GGCC	4 cut(s)	5, 207, 354, 484
BshNI	GGYRCC	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	3 cut(s)	59, 296, 361
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	4 cut(s)	5, 207, 354, 484
BsoBI	CYCGRG	1 cut(s)	485
Bsp143I	GATC	6 cut(s)	49, 78, 85, 124, 541, 588
BspACI	CCGC	4 cut(s)	140, 331, 347, 415
BspANI	GGCC	4 cut(s)	5, 207, 354, 484
BspCNI	CTCAG	1 cut(s)	549
BspLI	GGNNCC	4 cut(s)	51, 117, 412, 521
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	5 cut(s)	44, 57, 119, 536, 583
BspT107I	GGYRCC	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	275, 485
BssMI	GATC	6 cut(s)	49, 78, 85, 124, 541, 588
BssT1I	CCWWGG	1 cut(s)	275
Bst4CI	ACNGT	4 cut(s)	120, 157, 243, 272
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstDEI	CTNAG	3 cut(s)	247, 395, 536
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	370, 377
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	6 cut(s)	52, 81, 88, 127, 544, 591
BstMBI	GATC	6 cut(s)	49, 78, 85, 124, 541, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	484, 485
BstV1I	GCAGC	2 cut(s)	154, 157
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	5, 207, 354, 484
BtsCI	GGATG	2 cut(s)	370, 377
BtsIMutI	CAGTG	3 cut(s)	199, 457, 544
BveI	ACCTGC	1 cut(s)	557
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	5 cut(s)	116, 180, 206, 352, 483
Cfr9I	CCCGGG	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	44, 303
CviAII	CATG	2 cut(s)	314, 418
CviJI	RGCY	8 cut(s)	5, 92, 148, 207, 354, 394, 404, 484
CviKI_1	RGCY	8 cut(s)	5, 92, 148, 207, 354, 394, 404, 484
CviQI	GTAC	2 cut(s)	44, 303
DdeI	CTNAG	3 cut(s)	247, 395, 536
DpnI	GATC	6 cut(s)	51, 80, 87, 126, 543, 590
DpnII	GATC	6 cut(s)	49, 78, 85, 124, 541, 588
EciI	GGCGGA	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	116, 180
Eco47III	AGCGCT	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	2 cut(s)	317, 421
FaiI	YATR	5 cut(s)	165, 315, 326, 419, 458
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	2 cut(s)	313, 417
FauI	CCCGC	2 cut(s)	354, 422
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	143, 146
FokI	GGATG	2 cut(s)	364, 377
Fsp4HI	GCNGC	2 cut(s)	143, 146
FspBI	CTAG	5 cut(s)	93, 110, 356, 480, 601
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	2 cut(s)	143, 146
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	4 cut(s)	5, 207, 354, 484
HapII	CCGG	1 cut(s)	486
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	317, 421
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	3 cut(s)	74, 490, 547
HpaII	CCGG	1 cut(s)	486
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	5 cut(s)	184, 260, 268, 495, 546
Hpy188III	TCNNGA	2 cut(s)	230, 592
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	4 cut(s)	120, 157, 243, 272
HpyCH4V	TGCA	3 cut(s)	239, 425, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	3 cut(s)	247, 395, 536
Hsp92II	CATG	2 cut(s)	317, 421
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	6 cut(s)	49, 78, 85, 124, 541, 588
LmnI	GCTCC	2 cut(s)	104, 142
LpnPI	CCDG	9 cut(s)	32, 163, 243, 303, 335, 497, 499, 548, 552
Lsp1109I	GCAGC	2 cut(s)	154, 157
MaeI	CTAG	5 cut(s)	93, 110, 356, 480, 601
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	6 cut(s)	51, 80, 87, 126, 543, 590
MboI	GATC	6 cut(s)	49, 78, 85, 124, 541, 588
MboII	GAAGA	2 cut(s)	123, 305
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	4 cut(s)	98, 387, 428, 499
MlyI	GAGTC	2 cut(s)	499, 541
MmeI	TCCRAC	2 cut(s)	201, 569
MnlI	CCTC	6 cut(s)	16, 34, 106, 207, 534, 545
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	2 cut(s)	486, 487
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	572
NciI	CCSGG	2 cut(s)	486, 487
NdeII	GATC	6 cut(s)	49, 78, 85, 124, 541, 588
NlaIII	CATG	2 cut(s)	317, 421
NlaIV	GGNNCC	4 cut(s)	51, 117, 412, 521
NmuCI	GTSAC	1 cut(s)	452
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	144, 147
PleI	GAGTC	2 cut(s)	498, 541
PpsI	GAGTC	2 cut(s)	498, 541
PsiI	TTATAA	1 cut(s)	326
PspN4I	GGNNCC	4 cut(s)	51, 117, 412, 521
PspPI	GGNCC	5 cut(s)	116, 180, 206, 352, 483
PsrI	GAACNNNNNNTAC	2 cut(s)	326, 358
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	2 cut(s)	45, 304
RsaNI	GTAC	2 cut(s)	44, 303
RseI	CAYNNNNRTG	1 cut(s)	416
SalI	GTCGAC	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	2 cut(s)	143, 146
Sau3AI	GATC	6 cut(s)	49, 78, 85, 124, 541, 588
Sau96I	GGNCC	5 cut(s)	116, 180, 206, 352, 483
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	2 cut(s)	499, 541
ScrFI	CCNGG	2 cut(s)	486, 487
SetI	ASST	6 cut(s)	94, 396, 401, 406, 467, 571
SinI	GGWCC	2 cut(s)	116, 180
SmaI	CCCGGG	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	416
Sse9I	AATT	4 cut(s)	98, 387, 428, 499
SsiI	CCGC	4 cut(s)	140, 331, 347, 415
SspMI	CTAG	5 cut(s)	93, 110, 356, 480, 601
StyD4I	CCNGG	2 cut(s)	484, 485
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	4 cut(s)	120, 157, 243, 272
TaqI	TCGA	3 cut(s)	26, 77, 471
TasI	AATT	4 cut(s)	98, 387, 428, 499
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	3 cut(s)	199, 457, 544
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	2 cut(s)	142, 145
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	152, 302, 381
TspMI	CCCGGG	1 cut(s)	485
TspRI	CASTG	3 cut(s)	199, 457, 544
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	116, 180
XagI	CCTNNNNNAGG	1 cut(s)	57
XmaI	CCCGGG	1 cut(s)	485
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	5 cut(s)	93, 110, 356, 480, 601
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.