Rh5DG017600

UBA and UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
1340465 .. 1342759
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG017600.1

Sequence Viewer

Length: 972 bp
ATGACGCGCTCAAAGCTAATCAGTAAAGTCAAGAATCGAGATCGCTCAATCTCTCTGGTTTCACACATAGCAATGGCCTCAAAGGACAAGAAACCCTCGAAACCCCGAACCGGAGGCATCCGTACACTTTCCGATCTGAACAGGAGGTCCGCCGACTCCGACAGCGACTCCGATGCTCCCCAGGAGTATTACACCGGCGGCGAGAAAAGTGGAATGCTTGTTCAGGATCCTACCAAAGGCAACGATGTGGATTCGATCTTTGATCAAGCTAGGGAATTGGGAGCGGTGGAGGGACCGATTGATCCTTCTTCTGCATCCTCAAGCTCGAGGAGCTTTGCTGGAACCGGTAGATTACTATCGGGGGAGACTATACAGTCTGCTCCGCAGCAGCCCGAGACTGTTGTTCATAACATCATTTTCTGGTCCGATGGTTTCAGTGTAAATGATGGCCCGTTGAGGCGGTTGGACGATCCTGAAAATGCACCGTTCTTAGAGAGCATCCGAAAATCTGAATGTCCAAGGGAGTTAGAACCAGAAGATAGAAGTACTGCAGTTCATGTCAATCTTATAAGGCGGAATGAGAAATACCCGGAAGCGGTGAAGCGTCAAGTTGCATTTCAGGGTGTTGGAAGAACTCTAGGTAGCAGCTCAGCACCAGTGGCATCTGAGCCAACCGCTTCATCAACTCCTCCAAGTACTGGTCCAACTCCATCCCCGGGCCTAGTTGTGGATGAGAGTTTGCCATCCACATCAGTTCAGCTTAGGTTAGCTGATGGCACCCGCATGATTGCACAATTTAACTACCATCACACCATCAGTGACATACGCACCTTTGTCAACACATCTAGGCCCGGGAGTCCGAGTAATTATCAGTTGCAGGTGATGGGGTTCCCTCCCAAAATCCTCAATGATCCGAGTCAAACAATAGAACAGGCAGGTCTTGCCAATTCGGTTGTGATCCAGAAATTCTAG

Protein Analysis

323

Amino Acids

34.96

Weight (kDa)

6.55

Isoelectric Point (pI)

61.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEP PF08059 138 - 211 2.3e-25 SEP domain
UBX PF00789 248 - 322 3.6e-14 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AarI CACCTGC 1 cut(s) 868
AasI GACNNNNNNGTC 1 cut(s) 373
Acc36I ACCTGC 2 cut(s) 868, 926
AccB1I GGYRCC 1 cut(s) 776
AccB7I CCANNNNNTGG 1 cut(s) 698
AccBSI CCGCTC 1 cut(s) 284
AccII CGCG 1 cut(s) 7
AciI CCGC 9 cut(s) 150, 198, 284, 383, 460, 574, 596, 675, 781
AclWI GGATC 6 cut(s) 221, 234, 296, 464, 905, 952
AcsI RAATTY 1 cut(s) 965
AfaI GTAC 3 cut(s) 124, 547, 697
AfiI CCNNNNNNNGG 6 cut(s) 110, 236, 595, 698, 716, 727
AgeI ACCGGT 1 cut(s) 344
AjnI CCWGG 1 cut(s) 180
AloI GAACNNNNNNTCC 4 cut(s) 131, 163, 204, 236
AluBI AGCT 7 cut(s) 16, 269, 324, 333, 648, 760, 770
AluI AGCT 7 cut(s) 16, 269, 324, 333, 648, 760, 770
Alw26I GTCTC 2 cut(s) 359, 389
AlwI GGATC 6 cut(s) 221, 234, 296, 464, 905, 952
Ama87I CYCGRG 4 cut(s) 325, 392, 715, 851
AoxI GGCC 4 cut(s) 75, 448, 718, 848
ApeKI GCWGC 3 cut(s) 385, 388, 645
ApoI RAATTY 1 cut(s) 965
AsiGI ACCGGT 1 cut(s) 344
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 7 cut(s) 147, 293, 423, 449, 701, 718, 849
AsuC2I CCSGG 5 cut(s) 590, 716, 717, 852, 853
AsuHPI GGTGA 2 cut(s) 610, 892
AvaI CYCGRG 4 cut(s) 325, 392, 715, 851
AvaII GGWCC 4 cut(s) 147, 293, 423, 701
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 776
BbvI GCAGC 3 cut(s) 397, 400, 657
BccI CCATC 8 cut(s) 422, 440, 718, 751, 767, 813, 821, 877
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 5 cut(s) 590, 716, 717, 852, 853
BcoDI GTCTC 2 cut(s) 359, 389
BfaI CTAG 5 cut(s) 270, 638, 722, 846, 970
BfmI CTRYAG 1 cut(s) 549
BfuAI ACCTGC 2 cut(s) 868, 926
BisI GCNGC 4 cut(s) 199, 386, 389, 646
BlpI GCTNAGC 1 cut(s) 649
BlsI GCNGC 4 cut(s) 200, 387, 390, 647
BmcAI AGTACT 2 cut(s) 547, 697
Bme1390I CCNGG 6 cut(s) 182, 590, 716, 717, 852, 853
Bme18I GGWCC 4 cut(s) 147, 293, 423, 701
BmeT110I CYCGRG 4 cut(s) 325, 392, 715, 851
BmgT120I GGNCC 7 cut(s) 147, 293, 423, 449, 701, 718, 849
BmiI GGNNCC 5 cut(s) 228, 294, 343, 778, 890
BmrFI CCNGG 6 cut(s) 182, 590, 716, 717, 852, 853
BmsI GCATC 5 cut(s) 126, 163, 323, 507, 671
Bpu10I CCTNAGC 1 cut(s) 761
Bpu1102I GCTNAGC 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 304
BpuMI CCSGG 5 cut(s) 590, 716, 717, 852, 853
BsaBI GATNNNNATC 1 cut(s) 355
BsaJI CCNNGG 5 cut(s) 180, 518, 714, 715, 851
BsaWI WCCGGW 2 cut(s) 110, 344
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 847, 877
Bsc4I CCNNNNNNNGG 6 cut(s) 110, 236, 595, 698, 716, 727
Bse118I RCCGGY 2 cut(s) 194, 344
Bse1I ACTGG 2 cut(s) 656, 703
Bse3DI GCAATG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 355
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 5 cut(s) 180, 518, 714, 715, 851
BseGI GGATG 6 cut(s) 117, 314, 498, 710, 736, 743
BseJI GATNNNNATC 1 cut(s) 355
BseLI CCNNNNNNNGG 6 cut(s) 110, 236, 595, 698, 716, 727
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 657, 663
BseNI ACTGG 2 cut(s) 656, 703
BseRI GAGGAG 2 cut(s) 343, 678
BseXI GCAGC 3 cut(s) 397, 400, 657
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 4 cut(s) 77, 450, 720, 850
BshNI GGYRCC 1 cut(s) 776
BshTI ACCGGT 1 cut(s) 344
BsiHKCI CYCGRG 4 cut(s) 325, 392, 715, 851
BsiSI CCGG 6 cut(s) 111, 195, 345, 590, 716, 852
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 6 cut(s) 110, 236, 595, 698, 716, 727
BsmAI GTCTC 2 cut(s) 359, 389
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 4 cut(s) 77, 450, 720, 850
BsoBI CYCGRG 4 cut(s) 325, 392, 715, 851
Bsp143I GATC 9 cut(s) 40, 133, 226, 255, 262, 301, 469, 910, 957
Bsp1720I GCTNAGC 1 cut(s) 649
BspACI CCGC 9 cut(s) 150, 198, 284, 383, 460, 574, 596, 675, 781
BspANI GGCC 4 cut(s) 77, 450, 720, 850
BspCNI CTCAG 2 cut(s) 658, 662
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 5 cut(s) 228, 294, 343, 778, 890
BspMAI CTGCAG 1 cut(s) 553
BspMI ACCTGC 2 cut(s) 868, 926
BspPI GGATC 6 cut(s) 221, 234, 296, 464, 905, 952
BspT107I GGYRCC 1 cut(s) 776
BsrBI CCGCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 2 cut(s) 194, 344
BsrI ACTGG 2 cut(s) 656, 703
BssAI RCCGGY 2 cut(s) 194, 344
BssECI CCNNGG 5 cut(s) 180, 518, 714, 715, 851
BssMI GATC 9 cut(s) 40, 133, 226, 255, 262, 301, 469, 910, 957
BssT1I CCWWGG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 3 cut(s) 375, 400, 486
BstAPI GCANNNNNTGC 1 cut(s) 941
BstDEI CTNAG 4 cut(s) 490, 649, 666, 761
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 6 cut(s) 117, 314, 498, 710, 736, 743
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 9 cut(s) 43, 136, 229, 258, 265, 304, 472, 913, 960
BstMAI GTCTC 2 cut(s) 359, 389
BstMBI GATC 9 cut(s) 40, 133, 226, 255, 262, 301, 469, 910, 957
BstMWI GCNNNNNNNGC 4 cut(s) 13, 330, 659, 941
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 6 cut(s) 180, 588, 714, 715, 850, 851
BstSFI CTRYAG 1 cut(s) 549
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 397, 400, 657
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 4 cut(s) 77, 450, 720, 850
BtsCI GGATG 6 cut(s) 117, 314, 498, 710, 736, 743
BtsIMutI CAGTG 3 cut(s) 442, 663, 823
BveI ACCTGC 2 cut(s) 868, 926
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 2 cut(s) 194, 344
Cfr13I GGNCC 7 cut(s) 147, 293, 423, 449, 701, 718, 849
Cfr9I CCCGGG 2 cut(s) 715, 851
CseI GACGC 2 cut(s) 13, 593
Csp6I GTAC 3 cut(s) 123, 546, 696
CspAI ACCGGT 1 cut(s) 344
CviAII CATG 2 cut(s) 557, 784
CviQI GTAC 3 cut(s) 123, 546, 696
DdeI CTNAG 4 cut(s) 490, 649, 666, 761
DpnI GATC 9 cut(s) 42, 135, 228, 257, 264, 303, 471, 912, 959
DpnII GATC 9 cut(s) 40, 133, 226, 255, 262, 301, 469, 910, 957
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
EciI GGCGGA 2 cut(s) 139, 589
Eco130I CCWWGG 1 cut(s) 518
Eco47I GGWCC 4 cut(s) 147, 293, 423, 701
Eco88I CYCGRG 4 cut(s) 325, 392, 715, 851
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 518
FaeI CATG 2 cut(s) 560, 787
FaiI YATR 7 cut(s) 68, 371, 408, 558, 569, 785, 824
FaqI GGGAC 1 cut(s) 306
FatI CATG 2 cut(s) 556, 783
FauI CCCGC 1 cut(s) 788
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 4 cut(s) 199, 386, 389, 646
FokI GGATG 6 cut(s) 104, 301, 485, 697, 730, 743
Fsp4HI GCNGC 4 cut(s) 199, 386, 389, 646
FspBI CTAG 5 cut(s) 270, 638, 722, 846, 970
GlaI GCGC 1 cut(s) 8
GluI GCNGC 4 cut(s) 199, 386, 389, 646
HaeIII GGCC 4 cut(s) 77, 450, 720, 850
HapII CCGG 6 cut(s) 111, 195, 345, 590, 716, 852
HgaI GACGC 2 cut(s) 13, 593
HhaI GCGC 1 cut(s) 9
Hin1II CATG 2 cut(s) 560, 787
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HinfI GANTC 6 cut(s) 34, 155, 167, 251, 856, 916
HpaII CCGG 6 cut(s) 111, 195, 345, 590, 716, 852
HphI GGTGA 2 cut(s) 610, 892
Hpy166II GTNNAC 2 cut(s) 125, 838
Hpy188III TCNNGA 5 cut(s) 31, 38, 224, 473, 961
Hpy8I GTNNAC 2 cut(s) 125, 838
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 3 cut(s) 375, 400, 486
HpyCH4V TGCA 6 cut(s) 314, 482, 551, 614, 791, 877
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 330, 659, 941
HpyF3I CTNAG 4 cut(s) 490, 649, 666, 761
Hsp92II CATG 2 cut(s) 560, 787
HspAI GCGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 9 cut(s) 40, 133, 226, 255, 262, 301, 469, 910, 957
LmnI GCTCC 4 cut(s) 181, 281, 330, 385
Lsp1109I GCAGC 3 cut(s) 397, 400, 657
LweI GCATC 5 cut(s) 126, 163, 323, 507, 671
MaeI CTAG 5 cut(s) 270, 638, 722, 846, 970
MaeIII GTNAC 1 cut(s) 818
MalI GATC 9 cut(s) 42, 135, 228, 257, 264, 303, 471, 912, 959
MbiI CCGCTC 1 cut(s) 284
MboI GATC 9 cut(s) 40, 133, 226, 255, 262, 301, 469, 910, 957
MboII GAAGA 3 cut(s) 300, 548, 642
MflI RGATCY 1 cut(s) 226
MluCI AATT 5 cut(s) 275, 794, 865, 946, 965
MlyI GAGTC 4 cut(s) 149, 161, 865, 925
MmeI TCCRAC 4 cut(s) 183, 444, 607, 728
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 2 cut(s) 71, 782
MspI CCGG 6 cut(s) 111, 195, 345, 590, 716, 852
MspR9I CCNGG 6 cut(s) 182, 590, 716, 717, 852, 853
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 13, 330, 659, 941
NciI CCSGG 5 cut(s) 590, 716, 717, 852, 853
NdeII GATC 9 cut(s) 40, 133, 226, 255, 262, 301, 469, 910, 957
NlaIII CATG 2 cut(s) 560, 787
NlaIV GGNNCC 5 cut(s) 228, 294, 343, 778, 890
NmuCI GTSAC 1 cut(s) 818
PaeR7I CTCGAG 1 cut(s) 325
PaqCI CACCTGC 1 cut(s) 868
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 2 cut(s) 34, 251
PflMI CCANNNNNTGG 1 cut(s) 698
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 4 cut(s) 200, 387, 390, 647
PleI GAGTC 4 cut(s) 149, 161, 864, 924
PpsI GAGTC 4 cut(s) 149, 161, 864, 924
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 5 cut(s) 228, 294, 343, 778, 890
PspPI GGNCC 7 cut(s) 147, 293, 423, 449, 701, 718, 849
PspXI VCTCGAGB 1 cut(s) 325
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 3 cut(s) 124, 547, 697
RsaNI GTAC 3 cut(s) 123, 546, 696
RseI CAYNNNNRTG 2 cut(s) 71, 782
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 4 cut(s) 199, 386, 389, 646
Sau3AI GATC 9 cut(s) 40, 133, 226, 255, 262, 301, 469, 910, 957
Sau96I GGNCC 7 cut(s) 147, 293, 423, 449, 701, 718, 849
ScaI AGTACT 2 cut(s) 547, 697
SchI GAGTC 4 cut(s) 149, 161, 865, 925
ScrFI CCNGG 6 cut(s) 182, 590, 716, 717, 852, 853
SfaNI GCATC 5 cut(s) 126, 163, 323, 507, 671
SfcI CTRYAG 1 cut(s) 549
Sfr274I CTCGAG 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 194
SinI GGWCC 4 cut(s) 147, 293, 423, 701
SlaI CTCGAG 1 cut(s) 325
SmaI CCCGGG 2 cut(s) 717, 853
SmiMI CAYNNNNRTG 2 cut(s) 71, 782
SmlI CTYRAG 2 cut(s) 319, 325
SmoI CTYRAG 2 cut(s) 319, 325
Sse9I AATT 5 cut(s) 275, 794, 865, 946, 965
SsiI CCGC 9 cut(s) 150, 198, 284, 383, 460, 574, 596, 675, 781
SspMI CTAG 5 cut(s) 270, 638, 722, 846, 970
StyD4I CCNGG 6 cut(s) 180, 588, 714, 715, 850, 851
StyI CCWWGG 1 cut(s) 518
TaaI ACNGT 3 cut(s) 375, 400, 486
TaqI TCGA 4 cut(s) 37, 98, 254, 326
TaqII GACCGA 1 cut(s) 310
TasI AATT 5 cut(s) 275, 794, 865, 946, 965
TatI WGTACW 2 cut(s) 545, 695
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 34, 251
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 3 cut(s) 442, 663, 823
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 3 cut(s) 385, 388, 645
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 3 cut(s) 395, 545, 669
TspGWI ACGGA 1 cut(s) 110
TspMI CCCGGG 2 cut(s) 715, 851
TspRI CASTG 3 cut(s) 442, 663, 823
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 4 cut(s) 147, 293, 423, 701
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 1 cut(s) 965
XhoI CTCGAG 1 cut(s) 325
XmaI CCCGGG 2 cut(s) 715, 851
XspI CTAG 5 cut(s) 270, 638, 722, 846, 970
ZrmI AGTACT 2 cut(s) 547, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.