Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

703019 .. 705186

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCCTCCAAGGACAACAAGAAACCCTCGAAACCCCGAACCGGAGGCATCCGTACACTTTCCGATCTGAACCGGCCCACCGCCGACTCCGACAGCGACTCCGATGCTCCCCAGGAGTATTACACCGGCGGCGAGAAAAGTGGAATGCTGGTTCAGGATCCGACGAAAGGCAACAACGATGTGGATTCGATCTTTAATCAAGCTAGGGAGTTAGGAGCGGTGGAGGGACCTATTGATCCTTCTTCTGCATCCTCGAGCTCGAGGAGCTTTGCCGGAACGGGTAGACTACTCTCCGGGGAGACTATACAGTCTGCTCCGCAGCAGCCCGAGACTGTTGTGCATAACATCATTTTCTGGAGTGATGGTTTCAGTGTAAATGATGGACCGTTGAGGCGGTTGGAAGATCCTGAAAATGCACCGTTCTTAGAGAGCATCCGAAAATCTGAATGTCCAAGGGAGTTAGAACCAGAAGACAGAAGTACTGCAGTTCATGTCAATCTGATTAGGCGGAACGAGAAATACCCTGAAGCGGTGAAGCGTCAAGTTGCATTTCAGGGTGTTGGAAGAACTCTAGGTAGCAGCTCAGGAGCAGTGCCTTCTGAGCCAACCTCTTCAACAACTCCTCTAAGTACTGGTCCAACCCCATCCCTCGGCCTAGTTGTGGATGAAAATTTGCCAACCACATCAGTTCAGCTTAGGCTAGCTGATGGCACCCGTATGATTGCACAATTTAACTACCATCACACCATCAGTGACATTCGCACCTTTGTCGAGACATCTAGGCCTGGGAGTCCGAGTAATTATCAGTTGCAGGTGATGGGGTTCCCTCCTAAAATCCTCAATGATCCGACCCAAACAATAGAACAGGCAGGTCTTGCCAATTCAGTAGTGATCCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

302

Amino Acids

32.55

Weight (kDa)

5.25

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	116 - 189	6e-25	SEP domain
UBX	PF00789	225 - 300	9.2e-15	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	802
AasI	GACNNNNNNGTC	1 cut(s)	307
Acc36I	ACCTGC	2 cut(s)	802, 860
AccB1I	GGYRCC	1 cut(s)	710
AccBSI	CCGCTC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	7 cut(s)	81, 129, 218, 317, 394, 508, 530
AclWI	GGATC	6 cut(s)	152, 165, 230, 398, 839, 886
AcsI	RAATTY	2 cut(s)	670, 899
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	3 cut(s)	55, 481, 631
AfiI	CCNNNNNNNGG	5 cut(s)	41, 167, 529, 650, 661
AgsI	TTSAA	1 cut(s)	615
AjnI	CCWGG	2 cut(s)	111, 784
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	6 cut(s)	203, 258, 267, 582, 694, 704
AluI	AGCT	6 cut(s)	203, 258, 267, 582, 694, 704
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	3 cut(s)	293, 323, 767
AlwI	GGATC	6 cut(s)	152, 165, 230, 398, 839, 886
Ama87I	CYCGRG	3 cut(s)	253, 259, 326
AoxI	GGCC	4 cut(s)	3, 74, 652, 782
ApeKI	GCWGC	3 cut(s)	319, 322, 579
ApoI	RAATTY	2 cut(s)	670, 899
AspS9I	GGNCC	4 cut(s)	75, 227, 383, 635
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	544, 826
AsuNHI	GCTAGC	1 cut(s)	700
AvaI	CYCGRG	3 cut(s)	253, 259, 326
AvaII	GGWCC	3 cut(s)	227, 383, 635
BamHI	GGATCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	710
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	331, 334, 591
BccI	CCATC	7 cut(s)	356, 374, 652, 701, 747, 755, 811
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 751, 785
BciT130I	CCWGG	2 cut(s)	113, 786
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	3 cut(s)	293, 323, 767
BfaI	CTAG	6 cut(s)	204, 572, 656, 701, 780, 904
BfmI	CTRYAG	1 cut(s)	483
BfuAI	ACCTGC	2 cut(s)	802, 860
BisI	GCNGC	4 cut(s)	130, 320, 323, 580
BlsI	GCNGC	4 cut(s)	131, 321, 324, 581
BmcAI	AGTACT	2 cut(s)	481, 631
Bme1390I	CCNGG	3 cut(s)	113, 295, 786
Bme18I	GGWCC	3 cut(s)	227, 383, 635
BmeT110I	CYCGRG	3 cut(s)	253, 259, 326
BmgT120I	GGNCC	4 cut(s)	75, 227, 383, 635
BmiI	GGNNCC	4 cut(s)	159, 228, 712, 824
BmrFI	CCNGG	3 cut(s)	113, 295, 786
BmsI	GCATC	4 cut(s)	57, 94, 257, 441
BmtI	GCTAGC	1 cut(s)	704
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpmI	CTGGAG	1 cut(s)	376
Bpu10I	CCTNAGC	2 cut(s)	583, 695
BpuMI	CCSGG	1 cut(s)	295
BsaJI	CCNNGG	6 cut(s)	9, 111, 294, 452, 649, 785
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 349, 379, 781, 811
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 167, 529, 650, 661
Bse118I	RCCGGY	2 cut(s)	72, 125
Bse1I	ACTGG	1 cut(s)	637
BseBI	CCWGG	2 cut(s)	113, 786
BseDI	CCNNGG	6 cut(s)	9, 111, 294, 452, 649, 785
BseGI	GGATG	5 cut(s)	48, 248, 432, 644, 670
BseLI	CCNNNNNNNGG	5 cut(s)	41, 167, 529, 650, 661
BseMII	CTCAG	2 cut(s)	591, 597
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	2 cut(s)	277, 612
BseXI	GCAGC	3 cut(s)	331, 334, 591
BshFI	GGCC	4 cut(s)	5, 76, 654, 784
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	3 cut(s)	253, 259, 326
BsiSI	CCGG	5 cut(s)	42, 73, 126, 273, 294
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	5 cut(s)	41, 167, 529, 650, 661
BsmAI	GTCTC	3 cut(s)	293, 323, 767
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	4 cut(s)	5, 76, 654, 784
BsoBI	CYCGRG	3 cut(s)	253, 259, 326
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	7 cut(s)	64, 157, 189, 235, 403, 844, 891
BspACI	CCGC	7 cut(s)	81, 129, 218, 317, 394, 508, 530
BspANI	GGCC	4 cut(s)	5, 76, 654, 784
BspCNI	CTCAG	2 cut(s)	592, 596
BspLI	GGNNCC	4 cut(s)	159, 228, 712, 824
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	2 cut(s)	802, 860
BspOI	GCTAGC	1 cut(s)	704
BspPI	GGATC	6 cut(s)	152, 165, 230, 398, 839, 886
BspT107I	GGYRCC	1 cut(s)	710
BsrBI	CCGCTC	1 cut(s)	218
BsrFI	RCCGGY	2 cut(s)	72, 125
BsrI	ACTGG	1 cut(s)	637
BssAI	RCCGGY	2 cut(s)	72, 125
BssECI	CCNNGG	6 cut(s)	9, 111, 294, 452, 649, 785
BssMI	GATC	7 cut(s)	64, 157, 189, 235, 403, 844, 891
BssT1I	CCWWGG	2 cut(s)	9, 452
Bst2UI	CCWGG	2 cut(s)	113, 786
Bst4CI	ACNGT	4 cut(s)	309, 334, 387, 420
Bst6I	CTCTTC	1 cut(s)	616
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	5 cut(s)	424, 583, 600, 626, 695
BstF5I	GGATG	5 cut(s)	48, 248, 432, 644, 670
BstKTI	GATC	7 cut(s)	67, 160, 192, 238, 406, 847, 894
BstMAI	GTCTC	3 cut(s)	293, 323, 767
BstMBI	GATC	7 cut(s)	64, 157, 189, 235, 403, 844, 891
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 601, 875
BstNI	CCWGG	2 cut(s)	113, 786
BstSCI	CCNGG	3 cut(s)	111, 293, 784
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	331, 334, 591
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	157, 403
BstYI	RGATCY	2 cut(s)	157, 403
BsuRI	GGCC	4 cut(s)	5, 76, 654, 784
BtsCI	GGATG	5 cut(s)	48, 248, 432, 644, 670
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	376, 597, 757
BveI	ACCTGC	2 cut(s)	802, 860
Cac8I	GCNNGC	1 cut(s)	702
Cfr10I	RCCGGY	2 cut(s)	72, 125
Cfr13I	GGNCC	4 cut(s)	75, 227, 383, 635
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	3 cut(s)	54, 480, 630
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	3 cut(s)	54, 480, 630
DdeI	CTNAG	5 cut(s)	424, 583, 600, 626, 695
DpnI	GATC	7 cut(s)	66, 159, 191, 237, 405, 846, 893
DpnII	GATC	7 cut(s)	64, 157, 189, 235, 403, 844, 891
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
EciI	GGCGGA	1 cut(s)	523
Ecl136II	GAGCTC	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	9, 452
Eco147I	AGGCCT	1 cut(s)	784
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	3 cut(s)	227, 383, 635
Eco53kI	GAGCTC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	546
Eco88I	CYCGRG	3 cut(s)	253, 259, 326
EcoICRI	GAGCTC	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	111, 784
EcoT14I	CCWWGG	2 cut(s)	9, 452
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	2 cut(s)	9, 452
FaeI	CATG	1 cut(s)	494
FaiI	YATR	4 cut(s)	305, 342, 492, 719
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	130, 320, 323, 580
FokI	GGATG	5 cut(s)	35, 235, 419, 631, 677
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	4 cut(s)	130, 320, 323, 580
FspBI	CTAG	6 cut(s)	204, 572, 656, 701, 780, 904
GluI	GCNGC	4 cut(s)	130, 320, 323, 580
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	4 cut(s)	5, 76, 654, 784
HapII	CCGG	5 cut(s)	42, 73, 126, 273, 294
HgaI	GACGC	1 cut(s)	527
Hin1II	CATG	1 cut(s)	494
HinfI	GANTC	4 cut(s)	86, 98, 185, 790
HpaII	CCGG	5 cut(s)	42, 73, 126, 273, 294
HphI	GGTGA	2 cut(s)	544, 826
Hpy166II	GTNNAC	2 cut(s)	56, 284
Hpy188III	TCNNGA	6 cut(s)	155, 355, 407, 585, 772, 895
Hpy8I	GTNNAC	2 cut(s)	56, 284
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	249, 606
HpyCH4III	ACNGT	4 cut(s)	309, 334, 387, 420
HpyCH4V	TGCA	7 cut(s)	248, 340, 416, 485, 548, 725, 811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 601, 875
HpyF3I	CTNAG	5 cut(s)	424, 583, 600, 626, 695
Hsp92II	CATG	1 cut(s)	494
Kzo9I	GATC	7 cut(s)	64, 157, 189, 235, 403, 844, 891
LmnI	GCTCC	5 cut(s)	112, 215, 264, 319, 587
Lsp1109I	GCAGC	3 cut(s)	331, 334, 591
LweI	GCATC	4 cut(s)	57, 94, 257, 441
MaeI	CTAG	6 cut(s)	204, 572, 656, 701, 780, 904
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	7 cut(s)	66, 159, 191, 237, 405, 846, 893
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	7 cut(s)	64, 157, 189, 235, 403, 844, 891
MboII	GAAGA	5 cut(s)	234, 413, 482, 576, 603
MflI	RGATCY	2 cut(s)	157, 403
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	5 cut(s)	670, 728, 799, 880, 899
MlyI	GAGTC	3 cut(s)	80, 92, 799
MmeI	TCCRAC	6 cut(s)	114, 185, 378, 541, 662, 872
MseI	TTAA	2 cut(s)	195, 732
MslI	CAYNNNNRTG	1 cut(s)	716
MspI	CCGG	5 cut(s)	42, 73, 126, 273, 294
MspR9I	CCNGG	3 cut(s)	113, 295, 786
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	2 cut(s)	113, 786
MwoI	GCNNNNNNNGC	3 cut(s)	264, 601, 875
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	7 cut(s)	64, 157, 189, 235, 403, 844, 891
NheI	GCTAGC	1 cut(s)	700
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	4 cut(s)	159, 228, 712, 824
NmeAIII	GCCGAG	1 cut(s)	630
NmuCI	GTSAC	1 cut(s)	752
PaeR7I	CTCGAG	2 cut(s)	253, 259
PaqCI	CACCTGC	1 cut(s)	802
PceI	AGGCCT	1 cut(s)	784
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	131, 321, 324, 581
PleI	GAGTC	3 cut(s)	80, 92, 798
PpsI	GAGTC	3 cut(s)	80, 92, 798
PpuMI	RGGWCCY	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	111, 784
PspGI	CCWGG	2 cut(s)	111, 784
PspN4I	GGNNCC	4 cut(s)	159, 228, 712, 824
PspPI	GGNCC	4 cut(s)	75, 227, 383, 635
PspPPI	RGGWCCY	1 cut(s)	227
PspXI	VCTCGAGB	2 cut(s)	253, 259
PsrI	GAACNNNNNNTAC	2 cut(s)	503, 535
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	157, 403
RsaI	GTAC	3 cut(s)	55, 481, 631
RsaNI	GTAC	3 cut(s)	54, 480, 630
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	195, 732
SatI	GCNGC	4 cut(s)	130, 320, 323, 580
Sau3AI	GATC	7 cut(s)	64, 157, 189, 235, 403, 844, 891
Sau96I	GGNCC	4 cut(s)	75, 227, 383, 635
ScaI	AGTACT	2 cut(s)	481, 631
SchI	GAGTC	3 cut(s)	80, 92, 799
ScrFI	CCNGG	3 cut(s)	113, 295, 786
SduI	GDGCHC	1 cut(s)	260
SfaNI	GCATC	4 cut(s)	57, 94, 257, 441
SfcI	CTRYAG	1 cut(s)	483
Sfr274I	CTCGAG	2 cut(s)	253, 259
SgrAI	CRCCGGYG	1 cut(s)	125
SinI	GGWCC	3 cut(s)	227, 383, 635
SlaI	CTCGAG	2 cut(s)	253, 259
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	2 cut(s)	253, 259
SmoI	CTYRAG	2 cut(s)	253, 259
Sse9I	AATT	5 cut(s)	670, 728, 799, 880, 899
SseBI	AGGCCT	1 cut(s)	784
SsiI	CCGC	7 cut(s)	81, 129, 218, 317, 394, 508, 530
SspMI	CTAG	6 cut(s)	204, 572, 656, 701, 780, 904
SstI	GAGCTC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	784
StyD4I	CCNGG	3 cut(s)	111, 293, 784
StyI	CCWWGG	2 cut(s)	9, 452
TaaI	ACNGT	4 cut(s)	309, 334, 387, 420
TaqI	TCGA	5 cut(s)	29, 188, 254, 260, 771
TasI	AATT	5 cut(s)	670, 728, 799, 880, 899
TatI	WGTACW	2 cut(s)	479, 629
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	195, 732
Tru9I	TTAA	2 cut(s)	195, 732
TscAI	CASTG	3 cut(s)	376, 597, 757
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	3 cut(s)	319, 322, 579
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	2 cut(s)	479, 681
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	3 cut(s)	376, 597, 757
VpaK11BI	GGWCC	3 cut(s)	227, 383, 635
XapI	RAATTY	2 cut(s)	670, 899
XhoI	CTCGAG	2 cut(s)	253, 259
XmiI	GTMKAC	1 cut(s)	283
XspI	CTAG	6 cut(s)	204, 572, 656, 701, 780, 904
ZrmI	AGTACT	2 cut(s)	481, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.