Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

1286953 .. 1289898

Gene Structure 2946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCTCAAAGGACTACAAACCCGGCACCGGACACATCTATACACTTTCCGATCTGAACCGGAGTGGATTCGATGTGGATTCGATCTTTGATAAAGCTAGGGAATTGGGAGCGTTAGAGGGACGGTTTGATTCTGCGGAGCAGCCCAAGACTGTTGTTCATAACATCATTTTCTGGTCCGATGGTTTCAGTGTAAATGATGGTCGGTTGAGGCAGTTGGACGATCCTAAAAATGCACCATTCTTAGAGTGCATTCGAAATTCTGACTGTCCAAGGGAGTTACAGCCAGAAGATAGTACTGAAGTTCATATCAATCTTATAAGGCGGGACGACGGGAAATGCCCGCTGGGTGTTGGAAGAACTCTAGGTAGCAGCTCTGCACCAGTGGCATCCCCGGGCCTAGTTGTGGATGAAAGTTTGCCAATCACATCAATTCAGCTTAAGTTAGCTGATGGCACCCGCATGATTGCACAATTTAACTACCATCACACCATCAGTGACATACACACCTTTGTCAACACATCTAGGCCCGGGAGTCCGAGTAATTATCAGTTGCAGGTGATGGGGTTCCCTCCCAAAATCCTCAATGATCCGACTCAAACAATAGAACAGGCAGGTCTTGCCAATTCGGTTGTGATCCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

216

Amino Acids

23.78

Weight (kDa)

5.47

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	56 - 112	8e-17	SEP domain
UBX	PF00789	143 - 215	4.4e-13	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AarI	CACCTGC	1 cut(s)	547
Acc36I	ACCTGC	2 cut(s)	547, 605
AccB1I	GGYRCC	2 cut(s)	26, 455
AciI	CCGC	4 cut(s)	137, 325, 344, 460
AclWI	GGATC	3 cut(s)	218, 584, 631
AcsI	RAATTY	2 cut(s)	259, 644
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	29, 406
AflII	CTTAAG	1 cut(s)	440
AluBI	AGCT	4 cut(s)	98, 375, 439, 449
AluI	AGCT	4 cut(s)	98, 375, 439, 449
AlwI	GGATC	3 cut(s)	218, 584, 631
Ama87I	CYCGRG	2 cut(s)	394, 530
AoxI	GGCC	3 cut(s)	3, 397, 527
ApeKI	GCWGC	2 cut(s)	142, 372
ApoI	RAATTY	2 cut(s)	259, 644
AspS9I	GGNCC	3 cut(s)	177, 397, 528
AsuC2I	CCSGG	5 cut(s)	24, 395, 396, 531, 532
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	2 cut(s)	394, 530
AvaII	GGWCC	1 cut(s)	177
BanI	GGYRCC	2 cut(s)	26, 455
BbvI	GCAGC	2 cut(s)	154, 384
BccI	CCATC	6 cut(s)	176, 194, 446, 492, 500, 556
BcnI	CCSGG	5 cut(s)	24, 395, 396, 531, 532
BfaI	CTAG	5 cut(s)	99, 365, 401, 525, 649
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	2 cut(s)	547, 605
BisI	GCNGC	2 cut(s)	143, 373
BlsI	GCNGC	2 cut(s)	144, 374
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	5 cut(s)	24, 395, 396, 531, 532
Bme18I	GGWCC	1 cut(s)	177
BmeT110I	CYCGRG	2 cut(s)	394, 530
BmgT120I	GGNCC	3 cut(s)	177, 397, 528
BmiI	GGNNCC	3 cut(s)	28, 457, 569
BmrFI	CCNGG	5 cut(s)	24, 395, 396, 531, 532
BmsI	GCATC	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	256
BpuMI	CCSGG	5 cut(s)	24, 395, 396, 531, 532
BsaJI	CCNNGG	4 cut(s)	272, 393, 394, 530
BsaWI	WCCGGW	2 cut(s)	29, 60
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 406
Bse1I	ACTGG	1 cut(s)	383
BseDI	CCNNGG	4 cut(s)	272, 393, 394, 530
BseGI	GGATG	2 cut(s)	389, 415
BseLI	CCNNNNNNNGG	2 cut(s)	29, 406
BseNI	ACTGG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	154, 384
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	5, 399, 529
BshNI	GGYRCC	2 cut(s)	26, 455
BsiHKCI	CYCGRG	2 cut(s)	394, 530
BsiSI	CCGG	5 cut(s)	24, 30, 61, 395, 531
BslFI	GGGAC	2 cut(s)	135, 341
BslI	CCNNNNNNNGG	2 cut(s)	29, 406
BsmFI	GGGAC	2 cut(s)	135, 341
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	5, 399, 529
BsoBI	CYCGRG	2 cut(s)	394, 530
Bsp119I	TTCGAA	1 cut(s)	256
Bsp143I	GATC	5 cut(s)	52, 84, 223, 589, 636
BspACI	CCGC	4 cut(s)	137, 325, 344, 460
BspANI	GGCC	3 cut(s)	5, 399, 529
BspLI	GGNNCC	3 cut(s)	28, 457, 569
BspMI	ACCTGC	2 cut(s)	547, 605
BspPI	GGATC	3 cut(s)	218, 584, 631
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	2 cut(s)	26, 455
BspTI	CTTAAG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	4 cut(s)	272, 393, 394, 530
BssMI	GATC	5 cut(s)	52, 84, 223, 589, 636
BssT1I	CCWWGG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	126, 154, 269
BstAFI	CTTAAG	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	389, 415
BstKTI	GATC	5 cut(s)	55, 87, 226, 592, 639
BstMBI	GATC	5 cut(s)	52, 84, 223, 589, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 620
BstSCI	CCNGG	5 cut(s)	22, 393, 394, 529, 530
BstV1I	GCAGC	2 cut(s)	154, 384
BsuRI	GGCC	3 cut(s)	5, 399, 529
BtsCI	GGATG	2 cut(s)	389, 415
BtsIMutI	CAGTG	3 cut(s)	196, 390, 502
BveI	ACCTGC	2 cut(s)	547, 605
Cac8I	GCNNGC	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	177, 397, 528
Cfr9I	CCCGGG	2 cut(s)	394, 530
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	9 cut(s)	5, 98, 145, 286, 375, 399, 439, 449, 529
CviKI_1	RGCY	9 cut(s)	5, 98, 145, 286, 375, 399, 439, 449, 529
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	5 cut(s)	54, 86, 225, 591, 638
DpnII	GATC	5 cut(s)	52, 84, 223, 589, 636
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	321
Eco88I	CYCGRG	2 cut(s)	394, 530
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	1 cut(s)	466
FaiI	YATR	6 cut(s)	42, 162, 309, 320, 464, 503
FaqI	GGGAC	2 cut(s)	135, 341
FatI	CATG	1 cut(s)	462
FauI	CCCGC	3 cut(s)	318, 351, 467
Fnu4HI	GCNGC	2 cut(s)	143, 373
FokI	GGATG	2 cut(s)	376, 422
Fsp4HI	GCNGC	2 cut(s)	143, 373
FspBI	CTAG	5 cut(s)	99, 365, 401, 525, 649
GluI	GCNGC	2 cut(s)	143, 373
GsaI	CCCAGC	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	5, 399, 529
HapII	CCGG	5 cut(s)	24, 30, 61, 395, 531
Hin1II	CATG	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	5 cut(s)	69, 80, 131, 535, 595
HpaII	CCGG	5 cut(s)	24, 30, 61, 395, 531
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	6 cut(s)	52, 57, 181, 265, 540, 594
Hpy188III	TCNNGA	1 cut(s)	640
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	1 cut(s)	335
HpyCH4III	ACNGT	3 cut(s)	126, 154, 269
HpyCH4V	TGCA	5 cut(s)	236, 252, 380, 470, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 620
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	466
Kzo9I	GATC	5 cut(s)	52, 84, 223, 589, 636
LmnI	GCTCC	2 cut(s)	110, 139
Lsp1109I	GCAGC	2 cut(s)	154, 384
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	5 cut(s)	99, 365, 401, 525, 649
MaeIII	GTNAC	2 cut(s)	279, 497
MalI	GATC	5 cut(s)	54, 86, 225, 591, 638
MboI	GATC	5 cut(s)	52, 84, 223, 589, 636
MboII	GAAGA	2 cut(s)	302, 369
MluCI	AATT	7 cut(s)	104, 259, 432, 473, 544, 625, 644
MlyI	GAGTC	2 cut(s)	544, 589
MmeI	TCCRAC	3 cut(s)	198, 334, 617
MnlI	CCTC	5 cut(s)	16, 112, 204, 582, 593
MseI	TTAA	2 cut(s)	441, 477
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	346
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	5 cut(s)	24, 30, 61, 395, 531
MspR9I	CCNGG	5 cut(s)	24, 395, 396, 531, 532
Mva1269I	GAATGC	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	386, 620
NciI	CCSGG	5 cut(s)	24, 395, 396, 531, 532
NdeII	GATC	5 cut(s)	52, 84, 223, 589, 636
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	3 cut(s)	28, 457, 569
NmuCI	GTSAC	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	547
PctI	GAATGC	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	69, 80, 131
PkrI	GCNGC	2 cut(s)	144, 374
PleI	GAGTC	2 cut(s)	543, 589
PpsI	GAGTC	2 cut(s)	543, 589
PsiI	TTATAA	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	28, 457, 569
PspPI	GGNCC	3 cut(s)	177, 397, 528
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	441, 477
SatI	GCNGC	2 cut(s)	143, 373
Sau3AI	GATC	5 cut(s)	52, 84, 223, 589, 636
Sau96I	GGNCC	3 cut(s)	177, 397, 528
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	2 cut(s)	544, 589
ScrFI	CCNGG	5 cut(s)	24, 395, 396, 531, 532
SetI	ASST	8 cut(s)	100, 370, 377, 441, 451, 512, 561, 619
SfaNI	GCATC	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	1 cut(s)	177
SmaI	CCCGGG	2 cut(s)	396, 532
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	7 cut(s)	104, 259, 432, 473, 544, 625, 644
SsiI	CCGC	4 cut(s)	137, 325, 344, 460
SspMI	CTAG	5 cut(s)	99, 365, 401, 525, 649
StyD4I	CCNGG	5 cut(s)	22, 393, 394, 529, 530
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	3 cut(s)	126, 154, 269
TaqI	TCGA	3 cut(s)	72, 83, 256
TasI	AATT	7 cut(s)	104, 259, 432, 473, 544, 625, 644
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	3 cut(s)	69, 80, 131
Tru1I	TTAA	2 cut(s)	441, 477
Tru9I	TTAA	2 cut(s)	441, 477
TscAI	CASTG	3 cut(s)	196, 390, 502
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	142, 372
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	149, 296, 426
TspMI	CCCGGG	2 cut(s)	394, 530
TspRI	CASTG	3 cut(s)	196, 390, 502
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	2 cut(s)	259, 644
XmaI	CCCGGG	2 cut(s)	394, 530
XspI	CTAG	5 cut(s)	99, 365, 401, 525, 649
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.