Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

1134531 .. 1136782

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG016000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCCTCAAAGGACAAGAAACCCTCGAAACCCCGAACCGGAGGCATCCGTACACTTTCCGATCTGAACCGGAGGTCCGCCGACTCCGACAGCGACTCCGATGCTCCCCAGGAGTATTACACCGGCGGCGAGAAAAGTGGAATGCTCGTACAGGATCCTACGAAAGGCAATGATGTGGATTCGATCTTTGATCAAGCTAGGGAATTGGGAGCGGTGGAGGGACCGATTGATCCTTCTTCTGCATCCTCAAGCTCGAGGAGCTTTGCTGGAACCGGTAGATTACTATCGGGGGAGACTATACAGTCTGCTCCGCAGCAGCCCGAGACTGTTGTTCATAACATCATTTTCTGGTCCGATGGTTTCAGTGTAAATGATGGCCCGTTGAGGCGGTTGGACGATCCTGAAAATGCACCGTTCTTAGAGAGCATCCGAAAGTCTGAATGTCCAAGGGAGTTGGAACCAGAAGATAGAAGTACTGCAGTTCATGTCAATCTTATAAGGCGGAACGAGAAATACCCGGAAGCGGTGAAGCGTCAAGTTGCATTTCAGGGTGTTGGAAGAACTCTAGGTAGCAGCTCTGCACCAGTGGCATCTGAGCCAACCGCTTCATCAACTCCTCCAAGTACTGGTCCAACTCCATCCCCGGGCCTAGTTGTGGATGAAAGTTTGCCATCCACATCAGTTCAGCTTAGGTTAGCTGATGGCACCCGCATGATTGCACAATTTAACTACCATCACACCATTAGTGACATACACACCTTTGTCAACACATCTAGGCCCGGGAGTCCGAGTAATTATCAGTTGCAGGTGATGGGGTTCCCTCCCAAGATCCTCAATGATCCGACTCAAACAATAGAACAGGCAGGTCTTGCCAATTCGGTTGTGATCCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

299

Amino Acids

32.23

Weight (kDa)

5.34

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	114 - 187	2e-25	SEP domain
UBX	PF00789	224 - 298	1.4e-13	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AarI	CACCTGC	1 cut(s)	796
AasI	GACNNNNNNGTC	1 cut(s)	301
Acc36I	ACCTGC	2 cut(s)	796, 854
AccB1I	GGYRCC	1 cut(s)	704
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccBSI	CCGCTC	1 cut(s)	212
AciI	CCGC	9 cut(s)	78, 126, 212, 311, 388, 502, 524, 603, 709
AclWI	GGATC	7 cut(s)	149, 162, 224, 392, 823, 833, 880
AcsI	RAATTY	1 cut(s)	893
AfaI	GTAC	4 cut(s)	52, 150, 475, 625
AfiI	CCNNNNNNNGG	6 cut(s)	38, 164, 523, 626, 644, 655
AgeI	ACCGGT	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	108
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
AluBI	AGCT	6 cut(s)	197, 252, 261, 576, 688, 698
AluI	AGCT	6 cut(s)	197, 252, 261, 576, 688, 698
Alw26I	GTCTC	2 cut(s)	287, 317
AlwI	GGATC	7 cut(s)	149, 162, 224, 392, 823, 833, 880
Ama87I	CYCGRG	4 cut(s)	253, 320, 643, 779
AoxI	GGCC	4 cut(s)	3, 376, 646, 776
ApeKI	GCWGC	3 cut(s)	313, 316, 573
ApoI	RAATTY	1 cut(s)	893
AsiGI	ACCGGT	1 cut(s)	272
AspS9I	GGNCC	7 cut(s)	75, 221, 351, 377, 629, 646, 777
AsuC2I	CCSGG	5 cut(s)	518, 644, 645, 780, 781
AsuHPI	GGTGA	2 cut(s)	538, 820
AvaI	CYCGRG	4 cut(s)	253, 320, 643, 779
AvaII	GGWCC	4 cut(s)	75, 221, 351, 629
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	704
BbvI	GCAGC	3 cut(s)	325, 328, 585
BccI	CCATC	7 cut(s)	350, 368, 646, 679, 695, 741, 805
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	5 cut(s)	518, 644, 645, 780, 781
BcoDI	GTCTC	2 cut(s)	287, 317
BfaI	CTAG	5 cut(s)	198, 566, 650, 774, 898
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	2 cut(s)	796, 854
BisI	GCNGC	4 cut(s)	127, 314, 317, 574
BlsI	GCNGC	4 cut(s)	128, 315, 318, 575
BmcAI	AGTACT	2 cut(s)	475, 625
Bme1390I	CCNGG	6 cut(s)	110, 518, 644, 645, 780, 781
Bme18I	GGWCC	4 cut(s)	75, 221, 351, 629
BmeT110I	CYCGRG	4 cut(s)	253, 320, 643, 779
BmgT120I	GGNCC	7 cut(s)	75, 221, 351, 377, 629, 646, 777
BmiI	GGNNCC	6 cut(s)	156, 222, 271, 459, 706, 818
BmrFI	CCNGG	6 cut(s)	110, 518, 644, 645, 780, 781
BmsI	GCATC	5 cut(s)	54, 91, 251, 435, 599
Bpu10I	CCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	5 cut(s)	518, 644, 645, 780, 781
BsaBI	GATNNNNATC	1 cut(s)	283
BsaJI	CCNNGG	5 cut(s)	108, 446, 642, 643, 779
BsaWI	WCCGGW	3 cut(s)	38, 69, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 775, 805
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 164, 523, 626, 644, 655
Bse118I	RCCGGY	2 cut(s)	122, 272
Bse1I	ACTGG	2 cut(s)	584, 631
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	5 cut(s)	108, 446, 642, 643, 779
BseGI	GGATG	6 cut(s)	45, 242, 426, 638, 664, 671
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	6 cut(s)	38, 164, 523, 626, 644, 655
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	2 cut(s)	584, 631
BseRI	GAGGAG	2 cut(s)	271, 606
BseXI	GCAGC	3 cut(s)	325, 328, 585
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	4 cut(s)	5, 378, 648, 778
BshNI	GGYRCC	1 cut(s)	704
BshTI	ACCGGT	1 cut(s)	272
BsiHKCI	CYCGRG	4 cut(s)	253, 320, 643, 779
BsiSI	CCGG	7 cut(s)	39, 70, 123, 273, 518, 644, 780
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	6 cut(s)	38, 164, 523, 626, 644, 655
BsmAI	GTCTC	2 cut(s)	287, 317
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	4 cut(s)	5, 378, 648, 778
BsoBI	CYCGRG	4 cut(s)	253, 320, 643, 779
Bsp143I	GATC	9 cut(s)	61, 154, 183, 190, 229, 397, 828, 838, 885
BspACI	CCGC	9 cut(s)	78, 126, 212, 311, 388, 502, 524, 603, 709
BspANI	GGCC	4 cut(s)	5, 378, 648, 778
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	6 cut(s)	156, 222, 271, 459, 706, 818
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	2 cut(s)	796, 854
BspPI	GGATC	7 cut(s)	149, 162, 224, 392, 823, 833, 880
BspT107I	GGYRCC	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	175
BsrFI	RCCGGY	2 cut(s)	122, 272
BsrI	ACTGG	2 cut(s)	584, 631
BssAI	RCCGGY	2 cut(s)	122, 272
BssECI	CCNNGG	5 cut(s)	108, 446, 642, 643, 779
BssMI	GATC	9 cut(s)	61, 154, 183, 190, 229, 397, 828, 838, 885
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	303, 328, 414
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstDEI	CTNAG	3 cut(s)	418, 594, 689
BstENI	CCTNNNNNAGG	1 cut(s)	162
BstF5I	GGATG	6 cut(s)	45, 242, 426, 638, 664, 671
BstKTI	GATC	9 cut(s)	64, 157, 186, 193, 232, 400, 831, 841, 888
BstMAI	GTCTC	2 cut(s)	287, 317
BstMBI	GATC	9 cut(s)	61, 154, 183, 190, 229, 397, 828, 838, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 587, 869
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	6 cut(s)	108, 516, 642, 643, 778, 779
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	325, 328, 585
BstX2I	RGATCY	2 cut(s)	154, 828
BstYI	RGATCY	2 cut(s)	154, 828
BsuRI	GGCC	4 cut(s)	5, 378, 648, 778
BtsCI	GGATG	6 cut(s)	45, 242, 426, 638, 664, 671
BtsIMutI	CAGTG	2 cut(s)	370, 591
BveI	ACCTGC	2 cut(s)	796, 854
Cfr10I	RCCGGY	2 cut(s)	122, 272
Cfr13I	GGNCC	7 cut(s)	75, 221, 351, 377, 629, 646, 777
Cfr9I	CCCGGG	2 cut(s)	643, 779
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	4 cut(s)	51, 149, 474, 624
CspAI	ACCGGT	1 cut(s)	272
CviAII	CATG	2 cut(s)	485, 712
CviQI	GTAC	4 cut(s)	51, 149, 474, 624
DdeI	CTNAG	3 cut(s)	418, 594, 689
DpnI	GATC	9 cut(s)	63, 156, 185, 192, 231, 399, 830, 840, 887
DpnII	GATC	9 cut(s)	61, 154, 183, 190, 229, 397, 828, 838, 885
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
EciI	GGCGGA	2 cut(s)	67, 517
Eco130I	CCWWGG	1 cut(s)	446
Eco47I	GGWCC	4 cut(s)	75, 221, 351, 629
Eco88I	CYCGRG	4 cut(s)	253, 320, 643, 779
EcoNI	CCTNNNNNAGG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	2 cut(s)	488, 715
FaiI	YATR	6 cut(s)	299, 336, 486, 497, 713, 752
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	2 cut(s)	484, 711
FauI	CCCGC	1 cut(s)	716
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	127, 314, 317, 574
FokI	GGATG	6 cut(s)	32, 229, 413, 625, 658, 671
Fsp4HI	GCNGC	4 cut(s)	127, 314, 317, 574
FspBI	CTAG	5 cut(s)	198, 566, 650, 774, 898
GluI	GCNGC	4 cut(s)	127, 314, 317, 574
HaeIII	GGCC	4 cut(s)	5, 378, 648, 778
HapII	CCGG	7 cut(s)	39, 70, 123, 273, 518, 644, 780
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	2 cut(s)	488, 715
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	5 cut(s)	83, 95, 179, 784, 844
HpaII	CCGG	7 cut(s)	39, 70, 123, 273, 518, 644, 780
HphI	GGTGA	2 cut(s)	538, 820
Hpy166II	GTNNAC	2 cut(s)	53, 766
Hpy188III	TCNNGA	2 cut(s)	401, 889
Hpy8I	GTNNAC	2 cut(s)	53, 766
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	3 cut(s)	303, 328, 414
HpyCH4V	TGCA	7 cut(s)	242, 410, 479, 542, 581, 719, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 587, 869
HpyF3I	CTNAG	3 cut(s)	418, 594, 689
Hsp92II	CATG	2 cut(s)	488, 715
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	9 cut(s)	61, 154, 183, 190, 229, 397, 828, 838, 885
LmnI	GCTCC	4 cut(s)	109, 209, 258, 313
Lsp1109I	GCAGC	3 cut(s)	325, 328, 585
LweI	GCATC	5 cut(s)	54, 91, 251, 435, 599
MaeI	CTAG	5 cut(s)	198, 566, 650, 774, 898
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	9 cut(s)	63, 156, 185, 192, 231, 399, 830, 840, 887
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	9 cut(s)	61, 154, 183, 190, 229, 397, 828, 838, 885
MboII	GAAGA	3 cut(s)	228, 476, 570
MflI	RGATCY	2 cut(s)	154, 828
MluCI	AATT	5 cut(s)	203, 722, 793, 874, 893
MlyI	GAGTC	4 cut(s)	77, 89, 793, 838
MmeI	TCCRAC	6 cut(s)	111, 372, 435, 535, 656, 866
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	1 cut(s)	710
MspI	CCGG	7 cut(s)	39, 70, 123, 273, 518, 644, 780
MspR9I	CCNGG	6 cut(s)	110, 518, 644, 645, 780, 781
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	258, 587, 869
NciI	CCSGG	5 cut(s)	518, 644, 645, 780, 781
NdeII	GATC	9 cut(s)	61, 154, 183, 190, 229, 397, 828, 838, 885
NlaIII	CATG	2 cut(s)	488, 715
NlaIV	GGNNCC	6 cut(s)	156, 222, 271, 459, 706, 818
NmuCI	GTSAC	1 cut(s)	746
PaeR7I	CTCGAG	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	796
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	626
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	128, 315, 318, 575
PleI	GAGTC	4 cut(s)	77, 89, 792, 838
PpsI	GAGTC	4 cut(s)	77, 89, 792, 838
PsiI	TTATAA	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	6 cut(s)	156, 222, 271, 459, 706, 818
PspPI	GGNCC	7 cut(s)	75, 221, 351, 377, 629, 646, 777
PspXI	VCTCGAGB	1 cut(s)	253
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PstI	CTGCAG	1 cut(s)	481
PsuI	RGATCY	2 cut(s)	154, 828
RsaI	GTAC	4 cut(s)	52, 150, 475, 625
RsaNI	GTAC	4 cut(s)	51, 149, 474, 624
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	4 cut(s)	127, 314, 317, 574
Sau3AI	GATC	9 cut(s)	61, 154, 183, 190, 229, 397, 828, 838, 885
Sau96I	GGNCC	7 cut(s)	75, 221, 351, 377, 629, 646, 777
ScaI	AGTACT	2 cut(s)	475, 625
SchI	GAGTC	4 cut(s)	77, 89, 793, 838
ScrFI	CCNGG	6 cut(s)	110, 518, 644, 645, 780, 781
SfaNI	GCATC	5 cut(s)	54, 91, 251, 435, 599
SfcI	CTRYAG	1 cut(s)	477
Sfr274I	CTCGAG	1 cut(s)	253
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	4 cut(s)	75, 221, 351, 629
SlaI	CTCGAG	1 cut(s)	253
SmaI	CCCGGG	2 cut(s)	645, 781
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	2 cut(s)	247, 253
SmoI	CTYRAG	2 cut(s)	247, 253
Sse9I	AATT	5 cut(s)	203, 722, 793, 874, 893
SsiI	CCGC	9 cut(s)	78, 126, 212, 311, 388, 502, 524, 603, 709
SspMI	CTAG	5 cut(s)	198, 566, 650, 774, 898
StyD4I	CCNGG	6 cut(s)	108, 516, 642, 643, 778, 779
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	3 cut(s)	303, 328, 414
TaqI	TCGA	3 cut(s)	26, 182, 254
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	5 cut(s)	203, 722, 793, 874, 893
TatI	WGTACW	2 cut(s)	473, 623
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	2 cut(s)	370, 591
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	3 cut(s)	313, 316, 573
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	4 cut(s)	323, 473, 597, 675
TspGWI	ACGGA	1 cut(s)	38
TspMI	CCCGGG	2 cut(s)	643, 779
TspRI	CASTG	2 cut(s)	370, 591
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	4 cut(s)	75, 221, 351, 629
XagI	CCTNNNNNAGG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	893
XhoI	CTCGAG	1 cut(s)	253
XmaI	CCCGGG	2 cut(s)	643, 779
XspI	CTAG	5 cut(s)	198, 566, 650, 774, 898
ZrmI	AGTACT	2 cut(s)	475, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.