Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Reverse (-)

11731149 .. 11732674

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCGTCTAAGGACAAGAAACTATCGAAGCCAACAAGTGGTCGTACTGGTGGTATCCGTACACTTTCCGATCTGAACCGAAGATCAGAACCTGATTCCGATAGTGACTCCGATGGACCTCAAGAATACTTCACCGGTGGCGAAAAAAGTGGTATGCTTGTTCAAGATCCTACAAAAGAACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAGCTAGGAGCTGTGGAAGGACCTCTTGAGCATCCTTCGAGTTCTAGAAGCTTTACAGGAACAGGAAGATTGCTTTCTGGAGAAAGTGTGCCAACGGCTCTTCAACAGCCTGAGCCTGTGATTCACAATATTATTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGATCCAGAGAATGCTTCTTTTCTTGATAGCATTCGAAAGTCTGAATGTCCGAAAGAGCTTGAGCCTGTTGATAAAAGAGCTCCTGTACATGTTAATCTTATGAGAAGAGATGAGAAGTGCCCTGAGAAAGAAAAGCTTAAGGTTTCATTTCAAGGAGTTGGAAGGACTCTAGGTGGTGCAAGCTCATCAACAGCTTCAAGCCAAAGTAACCTAACTGATGTAGCAGCGGTTCAATCACCGTTACAGAGCCTTGTAGTAGATGAAACTCTTCCATCCACATCGATCCAGCTTAGACTCGCGGATGGGACACGCATGGTAGCAAAGTTCAACAACCATCACACGGTTAACGACATTCGTGGTTTCATTGAGTTTTCTCGACCAGGGAATCCAAACAACTATACCCTTCAGGTCATGGGGTTCCCACCAAAGCCACTTACTGACCCTTCTCAGACCATTGAACAAGCCGGTCTAGCAAGTTCTGTAGTCATTCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

302

Amino Acids

32.93

Weight (kDa)

5.61

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	118 - 191	3.2e-25	SEP domain
UBX	PF00789	227 - 301	1.2e-16	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	38
AccII	CGCG	1 cut(s)	707
AciI	CCGC	2 cut(s)	635, 707
AclWI	GGATC	3 cut(s)	161, 404, 685
AcsI	RAATTY	1 cut(s)	902
AcuI	CTGAAG	1 cut(s)	797
AfaI	GTAC	3 cut(s)	46, 61, 495
AfiI	CCNNNNNNNGG	2 cut(s)	38, 748
AflII	CTTAAG	1 cut(s)	545
AflIII	ACRYGT	1 cut(s)	496
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	7 cut(s)	164, 326, 560, 606, 641, 736, 866
AjnI	CCWGG	1 cut(s)	787
AluBI	AGCT	9 cut(s)	226, 233, 273, 466, 488, 544, 591, 602, 697
AluI	AGCT	9 cut(s)	226, 233, 273, 466, 488, 544, 591, 602, 697
Alw21I	GWGCWC	1 cut(s)	490
AlwI	GGATC	3 cut(s)	161, 404, 685
AlwNI	CAGNNNCTG	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	1 cut(s)	902
AsiGI	ACCGGT	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	675
AspS9I	GGNCC	3 cut(s)	116, 242, 389
AsuHPI	GGTGA	2 cut(s)	124, 636
AsuII	TTCGAA	1 cut(s)	442
AvaII	GGWCC	3 cut(s)	116, 242, 389
BaeGI	GKGCMC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	644
BccI	CCATC	5 cut(s)	107, 380, 688, 704, 750
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	789
BciVI	GTATCC	1 cut(s)	65
BfaI	CTAG	5 cut(s)	227, 267, 578, 878, 907
BfmI	CTRYAG	2 cut(s)	378, 888
BfrI	CTTAAG	1 cut(s)	545
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	1 cut(s)	789
Bme18I	GGWCC	3 cut(s)	116, 242, 389
BmgT120I	GGNCC	3 cut(s)	116, 242, 389
BmiI	GGNNCC	1 cut(s)	827
BmrFI	CCNGG	1 cut(s)	789
BmsI	GCATC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	442
BpuEI	CTTGAG	3 cut(s)	105, 269, 488
Bsa29I	ATCGAT	1 cut(s)	689
BsaJI	CCNNGG	1 cut(s)	788
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 748
Bse118I	RCCGGY	2 cut(s)	134, 872
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	789
BseCI	ATCGAT	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	788
BseGI	GGATG	4 cut(s)	253, 412, 680, 715
BseLI	CCNNNNNNNGG	2 cut(s)	38, 748
BseMII	CTCAG	3 cut(s)	324, 522, 869
BseNI	ACTGG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	707
BshTI	ACCGGT	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	135, 873
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	2 cut(s)	38, 748
BsmFI	GGGAC	1 cut(s)	727
BsmI	GAATGC	2 cut(s)	424, 438
Bsp119I	TTCGAA	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	490, 530
Bsp1407I	TGTACA	1 cut(s)	493
Bsp143I	GATC	5 cut(s)	70, 83, 166, 409, 690
BspACI	CCGC	2 cut(s)	635, 707
BspCNI	CTCAG	3 cut(s)	325, 523, 868
BspDI	ATCGAT	1 cut(s)	689
BspFNI	CGCG	1 cut(s)	707
BspLI	GGNNCC	1 cut(s)	827
BspPI	GGATC	3 cut(s)	161, 404, 685
BspQI	GCTCTTC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	442
BspTI	CTTAAG	1 cut(s)	545
BsrFI	RCCGGY	2 cut(s)	134, 872
BsrGI	TGTACA	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	2 cut(s)	134, 872
BssECI	CCNNGG	1 cut(s)	788
BssMI	GATC	5 cut(s)	70, 83, 166, 409, 690
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	3 cut(s)	379, 648, 751
Bst6I	CTCTTC	3 cut(s)	327, 508, 681
BstAFI	CTTAAG	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	493
BstBI	TTCGAA	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	5 cut(s)	9, 333, 531, 698, 855
BstF5I	GGATG	4 cut(s)	253, 412, 680, 715
BstFNI	CGCG	1 cut(s)	707
BstKTI	GATC	5 cut(s)	73, 86, 169, 412, 693
BstMBI	GATC	5 cut(s)	70, 83, 166, 409, 690
BstMWI	GCNNNNNNNGC	1 cut(s)	878
BstNI	CCWGG	1 cut(s)	789
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	787
BstSFI	CTRYAG	2 cut(s)	378, 888
BstSLI	GKGCMC	1 cut(s)	530
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	689
BsuI	GTATCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	689
BtsCI	GGATG	4 cut(s)	253, 412, 680, 715
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	589
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr10I	RCCGGY	2 cut(s)	134, 872
Cfr13I	GGNCC	3 cut(s)	116, 242, 389
ClaI	ATCGAT	1 cut(s)	689
Csp6I	GTAC	3 cut(s)	45, 60, 494
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	3 cut(s)	497, 721, 820
CviQI	GTAC	3 cut(s)	45, 60, 494
DdeI	CTNAG	5 cut(s)	9, 333, 531, 698, 855
DpnI	GATC	5 cut(s)	72, 85, 168, 411, 692
DpnII	GATC	5 cut(s)	70, 83, 166, 409, 690
Eam1104I	CTCTTC	3 cut(s)	327, 508, 681
EarI	CTCTTC	3 cut(s)	327, 508, 681
Ecl136II	GAGCTC	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	490
Eco47I	GGWCC	3 cut(s)	116, 242, 389
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	787
EcoT38I	GRGCYC	1 cut(s)	490
FaeI	CATG	3 cut(s)	500, 724, 823
FaiI	YATR	6 cut(s)	155, 498, 509, 722, 807, 821
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 528, 560
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	3 cut(s)	496, 720, 819
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	4 cut(s)	240, 419, 667, 722
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	5 cut(s)	227, 267, 578, 878, 907
GluI	GCNGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	321
HapII	CCGG	2 cut(s)	135, 873
Hin1II	CATG	3 cut(s)	500, 724, 823
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	2 cut(s)	271, 542
HinfI	GANTC	7 cut(s)	95, 107, 343, 372, 574, 702, 793
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	2 cut(s)	135, 873
HphI	GGTGA	2 cut(s)	124, 636
Hpy166II	GTNNAC	2 cut(s)	62, 754
Hpy188I	TCNGA	9 cut(s)	70, 75, 88, 100, 112, 451, 459, 858, 900
Hpy188III	TCNNGA	8 cut(s)	122, 164, 248, 267, 300, 413, 431, 783
Hpy8I	GTNNAC	2 cut(s)	62, 754
HpyAV	CCTTC	5 cut(s)	233, 267, 564, 821, 861
HpyCH4III	ACNGT	3 cut(s)	379, 648, 751
HpyCH4V	TGCA	1 cut(s)	587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	878
HpyF3I	CTNAG	5 cut(s)	9, 333, 531, 698, 855
Hsp92II	CATG	3 cut(s)	500, 724, 823
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	5 cut(s)	70, 83, 166, 409, 690
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	230, 493
Lsp1109I	GCAGC	1 cut(s)	644
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	5 cut(s)	227, 267, 578, 878, 907
MaeIII	GTNAC	3 cut(s)	104, 614, 648
MalI	GATC	5 cut(s)	72, 85, 168, 411, 692
MboI	GATC	5 cut(s)	70, 83, 166, 409, 690
MboII	GAAGA	5 cut(s)	93, 300, 314, 525, 668
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	490, 530
MluCI	AATT	1 cut(s)	902
MlyI	GAGTC	3 cut(s)	101, 568, 696
MmeI	TCCRAC	2 cut(s)	384, 547
MnlI	CCTC	3 cut(s)	129, 255, 390
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	4 cut(s)	210, 501, 546, 753
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	635
MspCI	CTTAAG	1 cut(s)	545
MspI	CCGG	2 cut(s)	135, 873
MspR9I	CCNGG	1 cut(s)	789
Mva1269I	GAATGC	2 cut(s)	424, 438
MvaI	CCWGG	1 cut(s)	789
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	1 cut(s)	878
NdeII	GATC	5 cut(s)	70, 83, 166, 409, 690
NlaIII	CATG	3 cut(s)	500, 724, 823
NlaIV	GGNNCC	1 cut(s)	827
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	442
PciI	ACATGT	1 cut(s)	496
PciSI	GCTCTTC	1 cut(s)	327
PctI	GAATGC	2 cut(s)	424, 438
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	4 cut(s)	95, 343, 372, 793
PflMI	CCANNNNNTGG	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	3 cut(s)	101, 568, 696
PpsI	GAGTC	3 cut(s)	101, 568, 696
PpuMI	RGGWCCY	1 cut(s)	242
PscI	ACATGT	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	1 cut(s)	827
PspPI	GGNCC	3 cut(s)	116, 242, 389
PspPPI	RGGWCCY	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	621, 653
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	3 cut(s)	46, 61, 495
RsaNI	GTAC	3 cut(s)	45, 60, 494
RseI	CAYNNNNRTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	210, 501, 546, 753
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	5 cut(s)	70, 83, 166, 409, 690
Sau96I	GGNCC	3 cut(s)	116, 242, 389
SchI	GAGTC	3 cut(s)	101, 568, 696
ScrFI	CCNGG	1 cut(s)	789
SduI	GDGCHC	2 cut(s)	490, 530
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	2 cut(s)	378, 888
SfuI	TTCGAA	1 cut(s)	442
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	116, 242, 389
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	4 cut(s)	120, 248, 467, 545
SmoI	CTYRAG	4 cut(s)	120, 248, 467, 545
Sse9I	AATT	1 cut(s)	902
SsiI	CCGC	2 cut(s)	635, 707
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	5 cut(s)	227, 267, 578, 878, 907
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	787
TaaI	ACNGT	3 cut(s)	379, 648, 751
TaqI	TCGA	5 cut(s)	26, 260, 442, 689, 784
TasI	AATT	1 cut(s)	902
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	4 cut(s)	95, 343, 372, 793
Tru1I	TTAA	4 cut(s)	210, 501, 546, 753
Tru9I	TTAA	4 cut(s)	210, 501, 546, 753
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	543, 684, 760
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	38
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	3 cut(s)	116, 242, 389
XapI	RAATTY	1 cut(s)	902
XbaI	TCTAGA	1 cut(s)	266
XceI	RCATGY	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	5 cut(s)	227, 267, 578, 878, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.