Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

1150580 .. 1153122

Gene Structure 2543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCCTCGCAAAGTGGATTCGATGTGGATTCGATCTTTGATCAAGCTAGGGAATTGGGAACGTTAGAGGGACGGTTTGATCCTCCTTCTGCTCCGCAGCAGCCCAAGACTGTTGTTCATAACATCATTTTCTGGTCCGATGGTTTCAGTGTAAATGATGGCCCGTTGAGGCAGTTGGACGATCCTGAAAATGCACCGTTCTTAGAGTTTATCCGAAAATCTGACTGTCCAAGGGAGTTACAGCCAGAAGATAGAAGTACTGAAGTTCATATCAATCTTATAAGGCGGGACGGGAAATGCCCGGGCCTAGTTGTGGATAAAAGTTTGCCATGGACATCAATTCAGCTTAAGTTAGCTGATGGCACTTGCATGACTGCAGAATTTAACTACCGTCACACAATCAGTGACATACGCACCTTTGTCGACACATCTAGGCCCGGGAGTCCGAGTAATTATCAGTTGCTGGTGATGGGGCGCCCTCCCAAAATCCTCAATGATCCGACTCAAACAATAGAAGAGGCAGATCTTGCCCGTTCGGTTGTGATCCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

185

Amino Acids

20.82

Weight (kDa)

4.96

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEP	PF08059	42 - 98	4e-19	SEP domain
UBX	PF00789	112 - 184	1.4e-12	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	2 cut(s)	95, 286
AclI	AACGTT	1 cut(s)	62
AclWI	GGATC	4 cut(s)	74, 176, 491, 538
AcsI	RAATTY	2 cut(s)	380, 551
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	475
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflII	CTTAAG	1 cut(s)	347
AluBI	AGCT	3 cut(s)	47, 346, 356
AluI	AGCT	3 cut(s)	47, 346, 356
AlwI	GGATC	4 cut(s)	74, 176, 491, 538
AlwNI	CAGNNNCTG	1 cut(s)	463
Ama87I	CYCGRG	2 cut(s)	301, 437
AoxI	GGCC	4 cut(s)	3, 160, 304, 434
ApeKI	GCWGC	2 cut(s)	97, 100
ApoI	RAATTY	2 cut(s)	380, 551
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	4 cut(s)	135, 161, 304, 435
AsuC2I	CCSGG	4 cut(s)	302, 303, 438, 439
AsuHPI	GGTGA	1 cut(s)	478
AvaI	CYCGRG	2 cut(s)	301, 437
AvaII	GGWCC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	109, 112
BccI	CCATC	4 cut(s)	134, 152, 353, 463
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	4 cut(s)	302, 303, 438, 439
BfaI	CTAG	4 cut(s)	48, 308, 432, 556
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	478
BfrI	CTTAAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	2 cut(s)	98, 101
BlsI	GCNGC	2 cut(s)	99, 102
BmcAI	AGTACT	1 cut(s)	259
Bme1390I	CCNGG	4 cut(s)	302, 303, 438, 439
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	2 cut(s)	301, 437
BmgT120I	GGNCC	4 cut(s)	135, 161, 304, 435
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	4 cut(s)	302, 303, 438, 439
BpuMI	CCSGG	4 cut(s)	302, 303, 438, 439
BsaHI	GRCGYC	1 cut(s)	475
BsaJI	CCNNGG	4 cut(s)	230, 301, 329, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
BseDI	CCNNGG	4 cut(s)	230, 301, 329, 437
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	109, 112
BshFI	GGCC	4 cut(s)	5, 162, 306, 436
BshNI	GGYRCC	1 cut(s)	474
BsiHKCI	CYCGRG	2 cut(s)	301, 437
BsiSI	CCGG	2 cut(s)	302, 438
BslFI	GGGAC	2 cut(s)	84, 302
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	84, 302
BsnI	GGCC	4 cut(s)	5, 162, 306, 436
BsoBI	CYCGRG	2 cut(s)	301, 437
Bsp143I	GATC	7 cut(s)	33, 40, 79, 181, 496, 523, 543
Bsp19I	CCATGG	1 cut(s)	329
BspACI	CCGC	2 cut(s)	95, 286
BspANI	GGCC	4 cut(s)	5, 162, 306, 436
BspLI	GGNNCC	1 cut(s)	476
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	4 cut(s)	74, 176, 491, 538
BspT107I	GGYRCC	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	347
BssECI	CCNNGG	4 cut(s)	230, 301, 329, 437
BssMI	GATC	7 cut(s)	33, 40, 79, 181, 496, 523, 543
BssNI	GRCGYC	1 cut(s)	475
BssT1I	CCWWGG	2 cut(s)	230, 329
Bst4CI	ACNGT	5 cut(s)	75, 112, 198, 227, 392
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	475
BstAFI	CTTAAG	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	7 cut(s)	36, 43, 82, 184, 499, 526, 546
BstMBI	GATC	7 cut(s)	33, 40, 79, 181, 496, 523, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstSCI	CCNGG	4 cut(s)	300, 301, 436, 437
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	109, 112
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	4 cut(s)	5, 162, 306, 436
BtgI	CCRYGG	1 cut(s)	329
BtsIMutI	CAGTG	2 cut(s)	154, 409
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	1 cut(s)	477
Cfr13I	GGNCC	4 cut(s)	135, 161, 304, 435
Cfr9I	CCCGGG	2 cut(s)	301, 437
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	2 cut(s)	330, 370
CviJI	RGCY	9 cut(s)	5, 47, 103, 162, 244, 306, 346, 356, 436
CviKI_1	RGCY	9 cut(s)	5, 47, 103, 162, 244, 306, 346, 356, 436
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	202
DinI	GGCGCC	1 cut(s)	476
DpnI	GATC	7 cut(s)	35, 42, 81, 183, 498, 525, 545
DpnII	GATC	7 cut(s)	33, 40, 79, 181, 496, 523, 543
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	230, 329
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	301, 437
EcoT14I	CCWWGG	2 cut(s)	230, 329
EgeI	GGCGCC	1 cut(s)	476
EheI	GGCGCC	1 cut(s)	476
ErhI	CCWWGG	2 cut(s)	230, 329
FaeI	CATG	2 cut(s)	333, 373
FaiI	YATR	6 cut(s)	120, 270, 281, 331, 371, 410
FaqI	GGGAC	2 cut(s)	84, 302
FatI	CATG	2 cut(s)	329, 369
FauI	CCCGC	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	98, 101
Fsp4HI	GCNGC	2 cut(s)	98, 101
FspBI	CTAG	4 cut(s)	48, 308, 432, 556
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	2 cut(s)	98, 101
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	4 cut(s)	5, 162, 306, 436
HapII	CCGG	2 cut(s)	302, 438
HhaI	GCGC	1 cut(s)	477
Hin1I	GRCGYC	1 cut(s)	475
Hin1II	CATG	2 cut(s)	333, 373
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	4 cut(s)	18, 29, 442, 502
HpaII	CCGG	2 cut(s)	302, 438
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	139, 215, 223, 447, 501
Hpy188III	TCNNGA	2 cut(s)	185, 547
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	5 cut(s)	75, 112, 198, 227, 392
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	194, 369, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	1 cut(s)	202
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	475
Hsp92II	CATG	2 cut(s)	333, 373
HspAI	GCGC	1 cut(s)	475
KasI	GGCGCC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	7 cut(s)	33, 40, 79, 181, 496, 523, 543
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	118, 198, 258, 315, 449, 451
Lsp1109I	GCAGC	2 cut(s)	109, 112
MaeI	CTAG	4 cut(s)	48, 308, 432, 556
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	3 cut(s)	237, 392, 404
MalI	GATC	7 cut(s)	35, 42, 81, 183, 498, 525, 545
MboI	GATC	7 cut(s)	33, 40, 79, 181, 496, 523, 543
MboII	GAAGA	2 cut(s)	260, 527
MflI	RGATCY	1 cut(s)	523
MluCI	AATT	5 cut(s)	53, 339, 380, 451, 551
Mly113I	GGCGCC	1 cut(s)	475
MlyI	GAGTC	2 cut(s)	451, 496
MmeI	TCCRAC	2 cut(s)	156, 524
MnlI	CCTC	7 cut(s)	16, 61, 93, 162, 489, 500, 511
MseI	TTAA	2 cut(s)	348, 384
MslI	CAYNNNNRTG	1 cut(s)	368
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	302, 438
MspR9I	CCNGG	4 cut(s)	302, 303, 438, 439
MwoI	GCNNNNNNNGC	1 cut(s)	527
NarI	GGCGCC	1 cut(s)	475
NciI	CCSGG	4 cut(s)	302, 303, 438, 439
NcoI	CCATGG	1 cut(s)	329
NdeII	GATC	7 cut(s)	33, 40, 79, 181, 496, 523, 543
NlaIII	CATG	2 cut(s)	333, 373
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	2 cut(s)	392, 404
PfeI	GAWTC	2 cut(s)	18, 29
PkrI	GCNGC	2 cut(s)	99, 102
PleI	GAGTC	2 cut(s)	450, 496
PluTI	GGCGCC	1 cut(s)	478
PpsI	GAGTC	2 cut(s)	450, 496
PsiI	TTATAA	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	4 cut(s)	135, 161, 304, 435
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	348, 384
SatI	GCNGC	2 cut(s)	98, 101
Sau3AI	GATC	7 cut(s)	33, 40, 79, 181, 496, 523, 543
Sau96I	GGNCC	4 cut(s)	135, 161, 304, 435
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	2 cut(s)	451, 496
ScrFI	CCNGG	4 cut(s)	302, 303, 438, 439
SetI	ASST	5 cut(s)	49, 65, 348, 358, 419
SfcI	CTRYAG	1 cut(s)	375
SfoI	GGCGCC	1 cut(s)	476
SinI	GGWCC	1 cut(s)	135
SmaI	CCCGGG	2 cut(s)	303, 439
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SrfI	GCCCGGGC	1 cut(s)	303
Sse9I	AATT	5 cut(s)	53, 339, 380, 451, 551
SsiI	CCGC	2 cut(s)	95, 286
SspDI	GGCGCC	1 cut(s)	474
SspMI	CTAG	4 cut(s)	48, 308, 432, 556
StyD4I	CCNGG	4 cut(s)	300, 301, 436, 437
StyI	CCWWGG	2 cut(s)	230, 329
TaaI	ACNGT	5 cut(s)	75, 112, 198, 227, 392
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	21, 32, 423
TasI	AATT	5 cut(s)	53, 339, 380, 451, 551
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	18, 29
Tru1I	TTAA	2 cut(s)	348, 384
Tru9I	TTAA	2 cut(s)	348, 384
TscAI	CASTG	2 cut(s)	154, 409
TseFI	GTSAC	2 cut(s)	392, 404
TseI	GCWGC	2 cut(s)	97, 100
Tsp45I	GTSAC	2 cut(s)	392, 404
TspDTI	ATGAA	2 cut(s)	107, 257
TspMI	CCCGGG	2 cut(s)	301, 437
TspRI	CASTG	2 cut(s)	154, 409
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	2 cut(s)	380, 551
XmaI	CCCGGG	2 cut(s)	301, 437
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	4 cut(s)	48, 308, 432, 556
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.