Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008241

Physical Location & Seq

Genomic Coordinates Forward (+)

8814736 .. 8816815

Gene Structure 2080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGACGGAGACGAACGAGAATCTGATAAACTCCTTCATCGAGATCACTTCTTCATCAAGAGAAGAAGCTAATTTCTTCCTCGAAAGTCACACTTGGAATCTAGACGCTGCCGTTTCAACTTTCCTCGATAACGATGCCGCCGCAGCCGCCGAACCAAACCCTACCGGGCCACCACCACCTTCTTCTACTATTGCCGGTGCACAATCTCCTTCTCAATCTCACTCTCCCGATTACACTCCGTCTGAAACCTCTCCCTCTCCTTCCCGATCACGATCTGCTTCTCCGTCTTCTCGCGCTGCTCCCTACGGTCTCCGATCGAGAGGCGGTGCTGGAGAGAATAAAGAAACTGAGAATCCGTCGGGAATTCGGAGTTCTAGGAGTCGTCAACACGCTGGGAATATCCGTACATTCGCCGATCTGAACCGTTCTCCGGCTGATGGCGAGGGCAGTGATTCGGATGAAGCTAATGAGTATTATACCGGTGGACAAAAGAGTGGGATGATGGTACAAGATCCTAAGAAAGTGAAAGATGTTGATGAACTTTTTGACCAAGCTAGGCAGTCAGCTGTAGACAGACCTGTTGAACCATCAAGATCAGCTTCTACAAGCTTCACTGGAGCTGCGCGTTTGTTGTCTGGTGAAGCTGTTTCGTCTTCTCCTCAGCAACAACAGCAAGAGCAGCCTCAAAGGATTATGCACACCATCACTTTCTGGTTGAATGGTTTCACTGTTAATGATGGTCCGTTAAGAGGGTTCAGTGACCCTGAAAACGCAGCCTTTATGAATAGCATCTCAAGGTCAGAGTGCCCCAGCGAACTCGAACCAGCAGATAAGAAGATCCCTGTTCATGTCGATCTGGTCAGGCGTGGAGAAAATTTCACCGAACCACCAAAGCCTAAAAATCCATTCCAAGGTGTAGGAAGAACCCTAGGAGCCAGCGGATCTGGTTCAAGTTCAGCACCACAAGCTTCATCTGCCCCAATGAACGTAGCACCAGCACCATCAAGAGGGCTAGTTGTAGATCCAGCAGCACCGACAACCTCTATCCAGCTCAGATTAGCAGACGGAACACGCCTTGTCTCCAGGTTCAACAACCACCACACTGTCAGAGATGTACGTGGGTTTATCGACGCTTCTAGACCCGGTGGCTCCAAAGAGTACCAGTTGCTAACCATGGGGTTCCCTCCTAAACAATTGACAGAATTGGACCAAACCATCGAGCAAGCTGGTATAGCTAATGCCGTCGTCATCCAGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

421

Amino Acids

45.0

Weight (kDa)

5.42

Isoelectric Point (pI)

69.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_4	PF14555	7 - 47	5e-13	UBA-like domain
UBA_8	PF22566	7 - 47	5.8e-07	UBA-like domain
SEP	PF08059	236 - 309	1.9e-24	SEP domain
UBX	PF00789	344 - 420	1.7e-19	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04210 AT4G15410 AT4G22150
fragaria_vesca	FvH4_3g01390 FvH4_3g01390
malus_domestica	MD05G1352600.v1.1 MD10G1326800.v1.1
pyrus_communis	pycom10g27660
rosa_chinensis	RchiOBHm_Chr5g0002041 RchiOBHm_Chr5g0002101
rosa_laevigata	RLG00000030990 RLG00000030994
rosa_multiflora	Rmu_sc0006008.1_g000009 Rmu_sc0043132.1_g000001
rosa_rugosa	Rorug04G0394500
rosa_samantha	Rh5AG015600 Rh5AG016000 Rh5BG019300 Rh5CG016900 Rh5CG017300 Rh5DG017600
rosa_wichuraiana	Rw5G001530 Rw5G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	2 cut(s)	297, 628
AciI	CCGC	5 cut(s)	141, 144, 150, 327, 942
AclWI	GGATC	4 cut(s)	509, 835, 952, 1019
AcsI	RAATTY	3 cut(s)	366, 877, 1259
AfaI	GTAC	4 cut(s)	409, 510, 1119, 1163
AfiI	CCNNNNNNNGG	5 cut(s)	433, 440, 752, 914, 1010
AgeI	ACCGGT	1 cut(s)	482
AgsI	TTSAA	5 cut(s)	120, 587, 721, 954, 1093
AjnI	CCWGG	1 cut(s)	1085
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	3 cut(s)	5, 317, 1087
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	4 cut(s)	509, 835, 952, 1019
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	7 cut(s)	110, 146, 299, 623, 682, 776, 1031
ApoI	RAATTY	3 cut(s)	366, 877, 1259
AsiGI	ACCGGT	1 cut(s)	482
Asp700I	GAANNNNTTC	1 cut(s)	725
AspA2I	CCTAGG	1 cut(s)	931
AspLEI	GCGC	2 cut(s)	299, 628
AspS9I	GGNCC	3 cut(s)	170, 743, 1210
AsuC2I	CCSGG	2 cut(s)	169, 1146
AsuHPI	GGTGA	2 cut(s)	653, 874
AvaII	GGWCC	2 cut(s)	743, 1210
AvrII	CCTAGG	1 cut(s)	931
BaeGI	GKGCMC	2 cut(s)	205, 812
BbsI	GAAGAC	2 cut(s)	282, 648
Bbv12I	GWGCWC	1 cut(s)	205
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	7 cut(s)	97, 158, 286, 610, 694, 788, 1043
BccI	CCATC	7 cut(s)	434, 499, 598, 713, 734, 1012, 1226
BceAI	ACGGC	2 cut(s)	98, 1229
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	1 cut(s)	1087
BcnI	CCSGG	2 cut(s)	169, 1146
BcoDI	GTCTC	3 cut(s)	5, 317, 1087
BfaI	CTAG	7 cut(s)	104, 378, 558, 932, 1016, 1140, 1264
BfmI	CTRYAG	1 cut(s)	570
BlnI	CCTAGG	1 cut(s)	931
Bme1390I	CCNGG	3 cut(s)	169, 1087, 1146
Bme18I	GGWCC	2 cut(s)	743, 1210
BmgT120I	GGNCC	3 cut(s)	170, 743, 1210
BmiI	GGNNCC	3 cut(s)	937, 1153, 1184
BmrFI	CCNGG	3 cut(s)	169, 1087, 1146
BmsI	GCATC	2 cut(s)	127, 801
BpiI	GAAGAC	2 cut(s)	282, 648
BpmI	CTGGAG	3 cut(s)	354, 639, 1069
Bpu10I	CCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	781
BpuMI	CCSGG	2 cut(s)	169, 1146
BsaAI	YACGTR	1 cut(s)	1121
BsaBI	GATNNNNATC	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	913, 931, 1176
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	5 cut(s)	433, 440, 752, 914, 1010
Bse118I	RCCGGY	2 cut(s)	197, 482
Bse1I	ACTGG	2 cut(s)	622, 1165
Bse8I	GATNNNNATC	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	1087
BseDI	CCNNGG	3 cut(s)	913, 931, 1176
BseGI	GGATG	3 cut(s)	466, 507, 1251
BseJI	GATNNNNATC	1 cut(s)	274
BseLI	CCNNNNNNNGG	5 cut(s)	433, 440, 752, 914, 1010
BseMII	CTCAG	3 cut(s)	342, 677, 1069
BseNI	ACTGG	2 cut(s)	622, 1165
BseRI	GAGGAG	1 cut(s)	651
BseSI	GKGCMC	2 cut(s)	205, 812
BseXI	GCAGC	7 cut(s)	97, 158, 286, 610, 694, 788, 1043
BseYI	CCCAGC	2 cut(s)	395, 812
Bsh1236I	CGCG	2 cut(s)	297, 628
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	172
BshTI	ACCGGT	1 cut(s)	482
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	5 cut(s)	168, 198, 434, 483, 1146
BslI	CCNNNNNNNGG	5 cut(s)	433, 440, 752, 914, 1010
BsmAI	GTCTC	3 cut(s)	5, 317, 1087
BsmBI	CGTCTC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	205, 812
Bsp19I	CCATGG	1 cut(s)	1176
BspACI	CCGC	5 cut(s)	141, 144, 150, 327, 942
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	3 cut(s)	343, 676, 1068
BspFNI	CGCG	2 cut(s)	297, 628
BspLI	GGNNCC	3 cut(s)	937, 1153, 1184
BspPI	GGATC	4 cut(s)	509, 835, 952, 1019
BspTNI	GGTCTC	1 cut(s)	317
BsrFI	RCCGGY	2 cut(s)	197, 482
BsrI	ACTGG	2 cut(s)	622, 1165
BssAI	RCCGGY	2 cut(s)	197, 482
BssECI	CCNNGG	3 cut(s)	913, 931, 1176
BssT1I	CCWWGG	3 cut(s)	913, 931, 1176
Bst2UI	CCWGG	1 cut(s)	1087
Bst4CI	ACNGT	4 cut(s)	311, 428, 733, 1108
BstBAI	YACGTR	1 cut(s)	1121
BstC8I	GCNNGC	2 cut(s)	940, 1227
BstDEI	CTNAG	4 cut(s)	351, 519, 663, 1055
BstDSI	CCRYGG	1 cut(s)	1176
BstF5I	GGATG	3 cut(s)	466, 507, 1251
BstFNI	CGCG	2 cut(s)	297, 628
BstHHI	GCGC	2 cut(s)	299, 628
BstMAI	GTCTC	3 cut(s)	5, 317, 1087
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 149, 673, 682, 968, 977, 1235
BstNI	CCWGG	1 cut(s)	1087
BstSCI	CCNGG	3 cut(s)	167, 1085, 1144
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	2 cut(s)	205, 812
BstUI	CGCG	2 cut(s)	297, 628
BstV1I	GCAGC	7 cut(s)	97, 158, 286, 610, 694, 788, 1043
BstV2I	GAAGAC	2 cut(s)	282, 648
BstX2I	RGATCY	4 cut(s)	514, 840, 944, 1024
BstYI	RGATCY	4 cut(s)	514, 840, 944, 1024
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	1176
BtsCI	GGATG	3 cut(s)	466, 507, 1251
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	5 cut(s)	457, 615, 729, 766, 1104
Cac8I	GCNNGC	2 cut(s)	940, 1227
CfoI	GCGC	2 cut(s)	299, 628
Cfr10I	RCCGGY	2 cut(s)	197, 482
Cfr13I	GGNCC	3 cut(s)	170, 743, 1210
CseI	GACGC	2 cut(s)	116, 1142
Csp6I	GTAC	4 cut(s)	408, 509, 1118, 1162
CspAI	ACCGGT	1 cut(s)	482
CviAII	CATG	2 cut(s)	851, 1177
CviQI	GTAC	4 cut(s)	408, 509, 1118, 1162
DdeI	CTNAG	4 cut(s)	351, 519, 663, 1055
Eco130I	CCWWGG	3 cut(s)	913, 931, 1176
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	2 cut(s)	743, 1210
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	1085
EcoT14I	CCWWGG	3 cut(s)	913, 931, 1176
ErhI	CCWWGG	3 cut(s)	913, 931, 1176
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	2 cut(s)	854, 1180
FaiI	YATR	6 cut(s)	480, 698, 785, 852, 1178, 1235
FalI	AAGNNNNNCTT	4 cut(s)	79, 111, 586, 618
FatI	CATG	2 cut(s)	850, 1176
FblI	GTMKAC	1 cut(s)	573
FokI	GGATG	3 cut(s)	473, 514, 1238
FspBI	CTAG	7 cut(s)	104, 378, 558, 932, 1016, 1140, 1264
GlaI	GCGC	2 cut(s)	298, 627
GsaI	CCCAGC	2 cut(s)	399, 816
GsuI	CTGGAG	3 cut(s)	354, 639, 1069
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	5 cut(s)	168, 198, 434, 483, 1146
HgaI	GACGC	2 cut(s)	116, 1142
HhaI	GCGC	2 cut(s)	299, 628
Hin1II	CATG	2 cut(s)	854, 1180
Hin6I	GCGC	2 cut(s)	297, 626
HinP1I	GCGC	2 cut(s)	297, 626
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HindIII	AAGCTT	2 cut(s)	610, 969
HinfI	GANTC	5 cut(s)	22, 100, 355, 382, 455
HpaII	CCGG	5 cut(s)	168, 198, 434, 483, 1146
HphI	GGTGA	2 cut(s)	653, 874
Hpy166II	GTNNAC	4 cut(s)	203, 389, 488, 574
Hpy188I	TCNGA	9 cut(s)	27, 247, 317, 372, 423, 460, 805, 1058, 1112
Hpy8I	GTNNAC	4 cut(s)	203, 389, 488, 574
Hpy99I	CGWCG	4 cut(s)	10, 364, 1136, 1250
HpyAV	CCTTC	4 cut(s)	46, 192, 222, 273
HpyCH4III	ACNGT	4 cut(s)	311, 428, 733, 1108
HpyCH4IV	ACGT	2 cut(s)	990, 1120
HpyCH4V	TGCA	2 cut(s)	203, 700
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 149, 673, 682, 968, 977, 1235
HpyF3I	CTNAG	4 cut(s)	351, 519, 663, 1055
HpySE526I	ACGT	2 cut(s)	990, 1120
Hsp92II	CATG	2 cut(s)	854, 1180
HspAI	GCGC	2 cut(s)	297, 626
LmnI	GCTCC	4 cut(s)	307, 620, 935, 1157
Lsp1109I	GCAGC	7 cut(s)	97, 158, 286, 610, 694, 788, 1043
LweI	GCATC	2 cut(s)	127, 801
MaeI	CTAG	7 cut(s)	104, 378, 558, 932, 1016, 1140, 1264
MaeII	ACGT	2 cut(s)	990, 1120
MaeIII	GTNAC	2 cut(s)	89, 761
MboII	GAAGA	8 cut(s)	45, 70, 77, 177, 282, 648, 850, 936
MfeI	CAATTG	1 cut(s)	1196
MflI	RGATCY	4 cut(s)	514, 840, 944, 1024
MhlI	GDGCHC	2 cut(s)	205, 812
MluCI	AATT	6 cut(s)	73, 366, 877, 1196, 1205, 1259
MlyI	GAGTC	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	2 cut(s)	735, 749
MspA1I	CMGCKG	2 cut(s)	569, 942
MspI	CCGG	5 cut(s)	168, 198, 434, 483, 1146
MspR9I	CCNGG	3 cut(s)	169, 1087, 1146
MunI	CAATTG	1 cut(s)	1196
MvaI	CCWGG	1 cut(s)	1087
MvnI	CGCG	2 cut(s)	297, 628
MwoI	GCNNNNNNNGC	7 cut(s)	146, 149, 673, 682, 968, 977, 1235
NciI	CCSGG	2 cut(s)	169, 1146
NcoI	CCATGG	1 cut(s)	1176
NlaIII	CATG	2 cut(s)	854, 1180
NlaIV	GGNNCC	3 cut(s)	937, 1153, 1184
NmuCI	GTSAC	2 cut(s)	89, 761
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	4 cut(s)	22, 100, 355, 455
PinAI	ACCGGT	1 cut(s)	482
Ple19I	CGATCG	1 cut(s)	320
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
Ppu21I	YACGTR	1 cut(s)	1121
Psp6I	CCWGG	1 cut(s)	1085
PspFI	CCCAGC	2 cut(s)	395, 812
PspGI	CCWGG	1 cut(s)	1085
PspN4I	GGNNCC	3 cut(s)	937, 1153, 1184
PspPI	GGNCC	3 cut(s)	170, 743, 1210
PsuI	RGATCY	4 cut(s)	514, 840, 944, 1024
PvuI	CGATCG	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	4 cut(s)	409, 510, 1119, 1163
RsaNI	GTAC	4 cut(s)	408, 509, 1118, 1162
SaqAI	TTAA	2 cut(s)	735, 749
Sau96I	GGNCC	3 cut(s)	170, 743, 1210
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	169, 1087, 1146
SduI	GDGCHC	2 cut(s)	205, 812
SfaNI	GCATC	2 cut(s)	127, 801
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	2 cut(s)	743, 1210
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
Sse9I	AATT	6 cut(s)	73, 366, 877, 1196, 1205, 1259
SsiI	CCGC	5 cut(s)	141, 144, 150, 327, 942
SspMI	CTAG	7 cut(s)	104, 378, 558, 932, 1016, 1140, 1264
StyD4I	CCNGG	3 cut(s)	167, 1085, 1144
StyI	CCWWGG	3 cut(s)	913, 931, 1176
TaaI	ACNGT	4 cut(s)	311, 428, 733, 1108
TaiI	ACGT	2 cut(s)	993, 1123
TaqI	TCGA	8 cut(s)	42, 84, 129, 320, 822, 855, 1131, 1221
TasI	AATT	6 cut(s)	73, 366, 877, 1196, 1205, 1259
TauI	GCSGC	3 cut(s)	143, 146, 152
TfiI	GAWTC	4 cut(s)	22, 100, 355, 455
Tru1I	TTAA	2 cut(s)	735, 749
Tru9I	TTAA	2 cut(s)	735, 749
TscAI	CASTG	5 cut(s)	457, 622, 736, 766, 1111
TseFI	GTSAC	2 cut(s)	89, 761
TseI	GCWGC	7 cut(s)	110, 146, 299, 623, 682, 776, 1031
Tsp45I	GTSAC	2 cut(s)	89, 761
TspDTI	ATGAA	8 cut(s)	28, 45, 477, 555, 800, 839, 963, 1001
TspGWI	ACGGA	7 cut(s)	23, 231, 276, 348, 395, 735, 1083
TspRI	CASTG	5 cut(s)	457, 622, 736, 766, 1111
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	743, 1210
XapI	RAATTY	3 cut(s)	366, 877, 1259
XbaI	TCTAGA	2 cut(s)	103, 1139
XmaJI	CCTAGG	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	7 cut(s)	104, 378, 558, 932, 1016, 1140, 1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.