Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008960

Physical Location & Seq

Genomic Coordinates Reverse (-)

5211604 .. 5212137

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08263.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTGAAGAATAAGCAATCGCAGCCTTTGGTTACTCCATCGAATTCGCATCTCTGGCGAAGAAGCCGTTGGAAGTCGTCGCATCAACTTCGAAGAATCAACGAAAACAGTGATTGGTTCGAGAGGTCGTTTGTTGGTGGTGCGTTTAAGGAATTGGATTTGGGGGTTGATGAAGAGACATGGAAGAAGAATTGGAGGTTGGTACCGATGAAGAAGAGGAAGAGGATAGAAGAAAAGGTGAAGTCCGTGCAAGCTGATGAGCTCAAAACGATGTGGGAGAAGATTGACGTTGTGCATGAAGCGAGATCTTTGATGGCTAAATATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

109

Amino Acids

13.14

Weight (kDa)

10.05

Isoelectric Point (pI)

67.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_C	PF22757	38 - 107	5.3e-26	Glabrous-enhancer-binding protein-like family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08263 AT4G08263
fragaria_vesca	FvH4_6g43700
malus_domestica	MD09G1103400.v1.1
prunus_persica	Prupe.3G222100_v2.0.a1
pyrus_communis	pycom09g02690 pycom17g08860
rosa_chinensis	RchiOBHm_Chr2g0160351
rosa_laevigata	RLG00000003445 RLG00000009371 RLG00000021213 RLG00000033523
rosa_multiflora	Rmu_co8007914.1_g000001 Rmu_sc0014846.1_g000002 Rmu_ssc0000110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089840
rosa_rugosa	Rorug02G0483200
rosa_samantha	Rh2AG548300 Rh2BG561900 Rh2CG532700 Rh2DG570400
rosa_wichuraiana	Rw2G045380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	43
AfaI	GTAC	1 cut(s)	204
AjuI	GAANNNNNNNTTGG	4 cut(s)	52, 84, 182, 214
AluBI	AGCT	2 cut(s)	254, 262
AluI	AGCT	2 cut(s)	254, 262
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	43
Asp718I	GGTACC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	16, 250
AsuII	TTCGAA	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	46, 307
BceAI	ACGGC	1 cut(s)	51
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BcoDI	GTCTC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	2 cut(s)	58, 91
Bpu14I	TTCGAA	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	202
BssMI	GATC	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	3 cut(s)	168, 209, 215
BstBI	TTCGAA	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	252
BstKTI	GATC	1 cut(s)	308
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 55
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	2 cut(s)	180, 296
CviJI	RGCY	5 cut(s)	25, 66, 254, 262, 317
CviKI_1	RGCY	5 cut(s)	25, 66, 254, 262, 317
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	1 cut(s)	307
DpnII	GATC	1 cut(s)	305
Eam1104I	CTCTTC	3 cut(s)	168, 209, 215
EarI	CTCTTC	3 cut(s)	168, 209, 215
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	2 cut(s)	183, 299
FaiI	YATR	3 cut(s)	181, 297, 324
FatI	CATG	2 cut(s)	179, 295
Fnu4HI	GCNGC	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	183, 299
HinfI	GANTC	1 cut(s)	96
HphI	GGTGA	2 cut(s)	16, 250
Hpy188III	TCNNGA	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	250, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 55
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	183, 299
KpnI	GGTACC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	305
LpnPI	CCDG	1 cut(s)	40
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	58, 91
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	307
MboI	GATC	1 cut(s)	305
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	3 cut(s)	43, 152, 190
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	117, 189, 210, 216
MseI	TTAA	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	22, 55
NdeII	GATC	1 cut(s)	305
NlaIII	CATG	2 cut(s)	183, 299
NlaIV	GGNNCC	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	6 cut(s)	128, 200, 240, 256, 264, 291
SfaNI	GCATC	2 cut(s)	58, 91
SfuI	TTCGAA	1 cut(s)	91
SgeI	CNNG	7 cut(s)	67, 133, 192, 259, 263, 308, 315
Sse9I	AATT	3 cut(s)	43, 152, 190
SstI	GAGCTC	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	41, 91, 120
TasI	AATT	3 cut(s)	43, 152, 190
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	3 cut(s)	186, 224, 312
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.