RLG00000009371

Mediator-associated protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008960
Physical Location & Seq
Forward (+)
51754349 .. 51755212
864 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009371

Sequence Viewer

Length: 372 bp
ATGACAAAGGCTGCTTGTTGTACGAATATGATGACTAGCAGAATCAGAGCACTAGTGAAAGCCATTCACTCTACTCCCACGCAGTCCGCGCTGGAGTGGTCACTCTCCGTTCCTGGAGTCGCAATTACAGTCTTGGAAACTATATTGCCTTATTCCCAAATGTCTATGATCCAATTACTCGGCAAGTGGGAGGTTTTGGAGAGAGTTATGATTCAGAAAATGCCTTCAATTGGGAGATCAAAGGCTAAAGAGTGGGATGATAGGTGGAGGAAGTTGCAGGTCTTAGTGATGGAGTTATCTGTCAAGAAGCTTGATTTGATGCATGAACAGGCTAAGCTTTTATTGGATGGGATAAAGTCACGAAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

124

Amino Acids

14.04

Weight (kDa)

9.69

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccII CGCG 1 cut(s) 89
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 163
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 1 cut(s) 228
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 310, 337
AluI AGCT 2 cut(s) 310, 337
Alw21I GWGCWC 1 cut(s) 52
AlwI GGATC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 52
BccI CCATC 2 cut(s) 283, 341
BciT130I CCWGG 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 2 cut(s) 36, 53
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 1 cut(s) 12
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 309
BpmI CTGGAG 2 cut(s) 113, 135
Bpu1102I GCTNAGC 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 262, 352
BseLI CCNNNNNNNGG 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 168, 236
Bsp1720I GCTNAGC 1 cut(s) 333
BspACI CCGC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 163
BssMI GATC 2 cut(s) 168, 236
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 283, 333
BstF5I GGATG 2 cut(s) 262, 352
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 2 cut(s) 171, 239
BstMBI GATC 2 cut(s) 168, 236
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstUI CGCG 1 cut(s) 89
BtsCI GGATG 2 cut(s) 262, 352
BveI ACCTGC 1 cut(s) 268
CfoI GCGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 21
CviAII CATG 1 cut(s) 323
CviJI RGCY 6 cut(s) 11, 62, 245, 310, 332, 337
CviKI_1 RGCY 6 cut(s) 11, 62, 245, 310, 332, 337
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 2 cut(s) 283, 333
DpnI GATC 2 cut(s) 170, 238
DpnII GATC 2 cut(s) 168, 236
EcoRII CCWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 324
FaeI CATG 1 cut(s) 326
FaiI YATR 5 cut(s) 29, 143, 167, 209, 324
FatI CATG 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 269, 359
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 36, 53
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 2 cut(s) 113, 135
HhaI GCGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 2 cut(s) 308, 335
HinfI GANTC 3 cut(s) 42, 117, 211
Hpy188I TCNGA 2 cut(s) 47, 216
Hpy188III TCNNGA 2 cut(s) 304, 360
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 277, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 283, 333
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 2 cut(s) 168, 236
LpnPI CCDG 5 cut(s) 77, 99, 126, 263, 314
LweI GCATC 1 cut(s) 309
MaeI CTAG 2 cut(s) 36, 53
MaeIII GTNAC 2 cut(s) 99, 357
MalI GATC 2 cut(s) 170, 238
MboI GATC 2 cut(s) 168, 236
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 3 cut(s) 123, 173, 228
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 2 cut(s) 184, 261
Mph1103I ATGCAT 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 2 cut(s) 168, 236
NlaIII CATG 1 cut(s) 326
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 99, 357
NsiI ATGCAT 1 cut(s) 324
PfeI GAWTC 2 cut(s) 42, 211
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 168, 236
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 52
SetI ASST 5 cut(s) 195, 266, 282, 312, 339
SfaNI GCATC 1 cut(s) 309
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 3 cut(s) 123, 173, 228
SsiI CCGC 1 cut(s) 87
SspMI CTAG 2 cut(s) 36, 53
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 130
TasI AATT 3 cut(s) 123, 173, 228
TfiI GAWTC 2 cut(s) 42, 211
TseFI GTSAC 2 cut(s) 99, 357
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 99, 357
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 1 cut(s) 97
XspI CTAG 2 cut(s) 36, 53
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.