Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000110.1

Orthogroup ID

OG0008960

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 645

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000110.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgggcgcgttccatgagttcttgaagagaagcttgaaggctgacgtcagcaagaaccagttgatggataagaccaggaggttgaagaagaagtaccatacgaatgctgagaaaggcgagaatggggagggcccggtgttttcgaaggcgcatgagttgaagtcgtttgatttgtcgaagaagatttggggagctgaggctaatgggggagatgatagtgcaaagaacagtaggaagaagccgaggaagagtgccaaggctaacaacaacaacaactcttctacagtcttggcattgcctgtttcggatgctgcggctgagaggagtgtggagaagaaagtaaaagtggaggagatgaatgttgctaatggcggagttaaggctgctgagtccgatgacttttggtccaagtacccatcgctgagtgattctttgcagcttgcaaattgctcatcgaggtgggagggtttggagagagttatgattcagaaaatgccttcaattgggagctcaaaggctaaagagttggatgataggtggaggaagttgcagctcttagagatggagttgtctgtcaagaagcttgatttgatgcatgaacaggctaagcttttattggatgggataaagtcgcggaaggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

214

Amino Acids

23.96

Weight (kDa)

9.59

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08263 AT4G08263
fragaria_vesca	FvH4_6g43700
malus_domestica	MD09G1103400.v1.1
prunus_persica	Prupe.3G222100_v2.0.a1
pyrus_communis	pycom09g02690 pycom17g08860
rosa_chinensis	RchiOBHm_Chr2g0160351
rosa_laevigata	RLG00000003445 RLG00000009371 RLG00000021213 RLG00000033523
rosa_multiflora	Rmu_co8007914.1_g000001 Rmu_sc0014846.1_g000002 Rmu_ssc0000110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089840
rosa_rugosa	Rorug02G0483200
rosa_samantha	Rh2AG548300 Rh2BG561900 Rh2CG532700 Rh2DG570400
rosa_wichuraiana	Rw2G045380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccII	CGCG	2 cut(s)	8, 634
AciI	CCGC	3 cut(s)	314, 372, 634
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	95, 413
AfiI	CCNNNNNNNGG	2 cut(s)	64, 503
AgsI	TTSAA	5 cut(s)	25, 37, 85, 160, 501
AhdI	GACNNNNNGTC	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	7 cut(s)	33, 194, 439, 510, 553, 583, 610
AluI	AGCT	7 cut(s)	33, 194, 439, 510, 553, 583, 610
Alw21I	GWGCWC	1 cut(s)	512
AoxI	GGCC	1 cut(s)	130
ApaI	GGGCCC	1 cut(s)	134
ApeKI	GCWGC	4 cut(s)	311, 383, 436, 550
AspLEI	GCGC	2 cut(s)	8, 151
AspS9I	GGNCC	3 cut(s)	130, 131, 405
AsuC2I	CCSGG	1 cut(s)	134
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	134, 512
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
Bbv12I	GWGCWC	1 cut(s)	512
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	298, 370, 448, 562
BccI	CCATC	4 cut(s)	58, 424, 556, 614
BciT130I	CCWGG	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	5 cut(s)	312, 315, 384, 437, 551
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	5 cut(s)	313, 316, 385, 438, 552
Bme1390I	CCNGG	2 cut(s)	76, 134
Bme18I	GGWCC	1 cut(s)	405
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmgT120I	GGNCC	3 cut(s)	130, 131, 405
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	76, 134
BmsI	GCATC	2 cut(s)	298, 582
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	242, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 503
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	242, 255
BseGI	GGATG	3 cut(s)	313, 535, 625
BseLI	CCNNNNNNNGG	2 cut(s)	64, 503
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	5 cut(s)	99, 186, 309, 378, 413
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	2 cut(s)	337, 365
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	4 cut(s)	298, 370, 448, 562
Bsh1236I	CGCG	2 cut(s)	8, 634
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	64, 503
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	132
Bsp119I	TTCGAA	1 cut(s)	143
Bsp120I	GGGCCC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	134, 512
Bsp1720I	GCTNAGC	1 cut(s)	606
BspACI	CCGC	3 cut(s)	314, 372, 634
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	5 cut(s)	100, 187, 310, 379, 414
BspFNI	CGCG	2 cut(s)	8, 634
BspLI	GGNNCC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	242, 255
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	230, 286
Bst6I	CTCTTC	3 cut(s)	20, 242, 283
BstACI	GRCGYC	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	7 cut(s)	108, 195, 318, 387, 422, 556, 606
BstF5I	GGATG	3 cut(s)	313, 535, 625
BstFNI	CGCG	2 cut(s)	8, 634
BstHHI	GCGC	2 cut(s)	8, 151
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	74, 132
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	2 cut(s)	8, 634
BstV1I	GCAGC	4 cut(s)	298, 370, 448, 562
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	313, 535, 625
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	2 cut(s)	8, 151
Cfr13I	GGNCC	3 cut(s)	130, 131, 405
Csp6I	GTAC	2 cut(s)	94, 412
CviAII	CATG	3 cut(s)	14, 152, 596
CviQI	GTAC	2 cut(s)	94, 412
DdeI	CTNAG	7 cut(s)	108, 195, 318, 387, 422, 556, 606
DriI	GACNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	3 cut(s)	20, 242, 283
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EarI	CTCTTC	3 cut(s)	20, 242, 283
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	134, 512
Eco47I	GGWCC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	510
EcoICRI	GAGCTC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	597
EcoT38I	GRGCYC	2 cut(s)	134, 512
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	17, 155, 599
FaiI	YATR	5 cut(s)	15, 99, 153, 482, 597
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	3 cut(s)	13, 151, 595
Fnu4HI	GCNGC	5 cut(s)	312, 315, 384, 437, 551
FokI	GGATG	3 cut(s)	320, 542, 632
FriOI	GRGCYC	2 cut(s)	134, 512
Fsp4HI	GCNGC	5 cut(s)	312, 315, 384, 437, 551
GlaI	GCGC	2 cut(s)	7, 150
GluI	GCNGC	5 cut(s)	312, 315, 384, 437, 551
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	2 cut(s)	8, 151
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	17, 155, 599
Hin6I	GCGC	2 cut(s)	6, 149
HinP1I	GCGC	2 cut(s)	6, 149
HindIII	AAGCTT	3 cut(s)	31, 581, 608
HinfI	GANTC	3 cut(s)	389, 428, 484
HpaII	CCGG	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	307, 394, 489
Hpy188III	TCNNGA	2 cut(s)	22, 577
HpyAV	CCTTC	4 cut(s)	31, 139, 507, 631
HpyCH4III	ACNGT	2 cut(s)	230, 286
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	5 cut(s)	221, 436, 443, 550, 595
HpyF3I	CTNAG	7 cut(s)	108, 195, 318, 387, 422, 556, 606
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	17, 155, 599
HspAI	GCGC	2 cut(s)	6, 149
LmnI	GCTCC	2 cut(s)	191, 507
LpnPI	CCDG	6 cut(s)	61, 71, 88, 147, 312, 587
Lsp1109I	GCAGC	4 cut(s)	298, 370, 448, 562
LweI	GCATC	2 cut(s)	298, 582
MaeII	ACGT	1 cut(s)	45
MboII	GAAGA	9 cut(s)	37, 97, 100, 190, 193, 247, 259, 270, 346
MfeI	CAATTG	1 cut(s)	501
MhlI	GDGCHC	2 cut(s)	134, 512
MluCI	AATT	2 cut(s)	445, 501
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	9 cut(s)	72, 121, 190, 237, 315, 343, 450, 457, 534
Mph1103I	ATGCAT	1 cut(s)	597
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	102, 457
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	76, 134
MunI	CAATTG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	8, 634
NciI	CCSGG	1 cut(s)	134
NlaIII	CATG	3 cut(s)	17, 155, 599
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	597
NspV	TTCGAA	1 cut(s)	143
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	428, 484
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	5 cut(s)	313, 316, 385, 438, 552
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	132
PspOMI	GGGCCC	1 cut(s)	130
PspPI	GGNCC	3 cut(s)	130, 131, 405
RsaI	GTAC	2 cut(s)	95, 413
RsaNI	GTAC	2 cut(s)	94, 412
RseI	CAYNNNNRTG	2 cut(s)	102, 457
SacI	GAGCTC	1 cut(s)	512
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	5 cut(s)	312, 315, 384, 437, 551
Sau96I	GGNCC	3 cut(s)	130, 131, 405
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	76, 134
SduI	GDGCHC	2 cut(s)	134, 512
SfaNI	GCATC	2 cut(s)	298, 582
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	102, 457
Sse9I	AATT	2 cut(s)	445, 501
SsiI	CCGC	3 cut(s)	314, 372, 634
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	74, 132
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	230, 286
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	143, 176, 455
TasI	AATT	2 cut(s)	445, 501
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	428, 484
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	4 cut(s)	311, 383, 436, 550
TspDTI	ATGAA	2 cut(s)	371, 612
Van91I	CCANNNNNTGG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	405
ZraI	GACGTC	1 cut(s)	46
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.