Mediator-associated protein 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G08263 AT4G08263 |
| fragaria_vesca | FvH4_6g43700 |
| malus_domestica | MD09G1103400.v1.1 |
| prunus_persica | Prupe.3G222100_v2.0.a1 |
| pyrus_communis | pycom09g02690 pycom17g08860 |
| rosa_chinensis | RchiOBHm_Chr2g0160351 |
| rosa_laevigata | RLG00000003445 RLG00000009371 RLG00000021213 RLG00000033523 |
| rosa_multiflora | Rmu_co8007914.1_g000001 Rmu_sc0014846.1_g000002 Rmu_ssc0000110.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00089840 |
| rosa_rugosa | Rorug02G0483200 |
| rosa_samantha | Rh2AG548300 Rh2BG561900 Rh2CG532700 Rh2DG570400 |
| rosa_wichuraiana | Rw2G045380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 672 |
| Acc36I | ACCTGC | 1 cut(s) | 1165 |
| AccB1I | GGYRCC | 2 cut(s) | 500, 815 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 688 |
| AccBSI | CCGCTC | 2 cut(s) | 413, 434 |
| AccII | CGCG | 3 cut(s) | 284, 632, 1258 |
| AclWI | GGATC | 3 cut(s) | 458, 562, 614 |
| AcoI | YGGCCR | 2 cut(s) | 285, 453 |
| AcuI | CTGAAG | 2 cut(s) | 593, 728 |
| AcyI | GRCGYC | 3 cut(s) | 120, 501, 669 |
| AfaI | GTAC | 2 cut(s) | 719, 1037 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 253, 437, 438, 603, 688, 1127 |
| AgsI | TTSAA | 6 cut(s) | 128, 592, 649, 661, 784, 1125 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1027 |
| AjnI | CCWGG | 2 cut(s) | 72, 698 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 368, 400 |
| AluBI | AGCT | 5 cut(s) | 657, 1063, 1134, 1207, 1234 |
| AluI | AGCT | 5 cut(s) | 657, 1063, 1134, 1207, 1234 |
| Alw21I | GWGCWC | 1 cut(s) | 1136 |
| Alw26I | GTCTC | 4 cut(s) | 62, 293, 367, 507 |
| AlwI | GGATC | 3 cut(s) | 458, 562, 614 |
| Ama87I | CYCGRG | 2 cut(s) | 437, 481 |
| AoxI | GGCC | 5 cut(s) | 261, 285, 453, 594, 754 |
| ApaI | GGGCCC | 1 cut(s) | 758 |
| ApeKI | GCWGC | 4 cut(s) | 35, 935, 1007, 1060 |
| AspLEI | GCGC | 5 cut(s) | 15, 450, 503, 632, 775 |
| AspS9I | GGNCC | 3 cut(s) | 754, 755, 1029 |
| AsuC2I | CCSGG | 5 cut(s) | 292, 438, 439, 452, 758 |
| AsuHPI | GGTGA | 1 cut(s) | 337 |
| AsuII | TTCGAA | 1 cut(s) | 767 |
| AsuNHI | GCTAGC | 1 cut(s) | 1063 |
| AvaI | CYCGRG | 2 cut(s) | 437, 481 |
| AvaII | GGWCC | 1 cut(s) | 1029 |
| BaeGI | GKGCMC | 1 cut(s) | 758 |
| BanI | GGYRCC | 2 cut(s) | 500, 815 |
| BanII | GRGCYC | 2 cut(s) | 758, 1136 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 701, 733 |
| BbsI | GAAGAC | 2 cut(s) | 60, 279 |
| Bbv12I | GWGCWC | 1 cut(s) | 1136 |
| BbvI | GCAGC | 4 cut(s) | 22, 922, 994, 1072 |
| BccI | CCATC | 5 cut(s) | 337, 682, 1048, 1180, 1238 |
| BceAI | ACGGC | 2 cut(s) | 107, 523 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 545, 579 |
| BciT130I | CCWGG | 2 cut(s) | 74, 700 |
| BcnI | CCSGG | 5 cut(s) | 292, 438, 439, 452, 758 |
| BcoDI | GTCTC | 4 cut(s) | 62, 293, 367, 507 |
| BfaI | CTAG | 2 cut(s) | 618, 1064 |
| BfmI | CTRYAG | 1 cut(s) | 906 |
| BfoI | RGCGCY | 3 cut(s) | 16, 451, 504 |
| BfuAI | ACCTGC | 1 cut(s) | 1165 |
| BisI | GCNGC | 7 cut(s) | 36, 285, 288, 936, 939, 1008, 1061 |
| BlpI | GCTNAGC | 1 cut(s) | 1230 |
| BlsI | GCNGC | 7 cut(s) | 37, 286, 289, 937, 940, 1009, 1062 |
| Bme1390I | CCNGG | 7 cut(s) | 74, 292, 438, 439, 452, 700, 758 |
| Bme18I | GGWCC | 1 cut(s) | 1029 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1027 |
| BmeT110I | CYCGRG | 2 cut(s) | 437, 481 |
| BmgT120I | GGNCC | 3 cut(s) | 754, 755, 1029 |
| BmiI | GGNNCC | 5 cut(s) | 6, 420, 502, 756, 817 |
| BmrFI | CCNGG | 7 cut(s) | 74, 292, 438, 439, 452, 700, 758 |
| BmsI | GCATC | 2 cut(s) | 922, 1206 |
| BmtI | GCTAGC | 1 cut(s) | 1067 |
| BpiI | GAAGAC | 2 cut(s) | 60, 279 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 41, 73 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1230 |
| Bpu14I | TTCGAA | 1 cut(s) | 767 |
| BpuMI | CCSGG | 5 cut(s) | 292, 438, 439, 452, 758 |
| BsaBI | GATNNNNATC | 1 cut(s) | 566 |
| BsaHI | GRCGYC | 3 cut(s) | 120, 501, 669 |
| BsaI | GGTCTC | 2 cut(s) | 62, 293 |
| BsaJI | CCNNGG | 5 cut(s) | 72, 437, 819, 866, 879 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 290, 320, 368, 371, 398, 401 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 253, 437, 438, 603, 688, 1127 |
| Bse1I | ACTGG | 1 cut(s) | 682 |
| Bse3DI | GCAATG | 1 cut(s) | 917 |
| Bse8I | GATNNNNATC | 1 cut(s) | 566 |
| BseBI | CCWGG | 2 cut(s) | 74, 700 |
| BseDI | CCNNGG | 5 cut(s) | 72, 437, 819, 866, 879 |
| BseGI | GGATG | 6 cut(s) | 82, 329, 585, 937, 1159, 1249 |
| BseJI | GATNNNNATC | 1 cut(s) | 566 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 253, 437, 438, 603, 688, 1127 |
| BseMI | GCAATG | 1 cut(s) | 917 |
| BseMII | CTCAG | 4 cut(s) | 723, 933, 1002, 1037 |
| BseNI | ACTGG | 1 cut(s) | 682 |
| BseSI | GKGCMC | 1 cut(s) | 758 |
| BseX3I | CGGCCG | 2 cut(s) | 285, 453 |
| BseXI | GCAGC | 4 cut(s) | 22, 922, 994, 1072 |
| Bsh1236I | CGCG | 3 cut(s) | 284, 632, 1258 |
| Bsh1285I | CGRYCG | 2 cut(s) | 288, 456 |
| BshFI | GGCC | 5 cut(s) | 263, 287, 455, 596, 756 |
| BshNI | GGYRCC | 2 cut(s) | 500, 815 |
| BsiEI | CGRYCG | 2 cut(s) | 288, 456 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1136 |
| BsiHKCI | CYCGRG | 2 cut(s) | 437, 481 |
| BsiSI | CCGG | 6 cut(s) | 291, 416, 422, 438, 452, 758 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 253, 437, 438, 603, 688, 1127 |
| BsmAI | GTCTC | 4 cut(s) | 62, 293, 367, 507 |
| BsmBI | CGTCTC | 1 cut(s) | 507 |
| BsmI | GAATGC | 2 cut(s) | 205, 733 |
| BsnI | GGCC | 5 cut(s) | 263, 287, 455, 596, 756 |
| Bso31I | GGTCTC | 2 cut(s) | 62, 293 |
| BsoBI | CYCGRG | 2 cut(s) | 437, 481 |
| Bsp119I | TTCGAA | 1 cut(s) | 767 |
| Bsp120I | GGGCCC | 1 cut(s) | 754 |
| Bsp1286I | GDGCHC | 2 cut(s) | 758, 1136 |
| Bsp143I | GATC | 3 cut(s) | 463, 567, 606 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1230 |
| BspANI | GGCC | 5 cut(s) | 263, 287, 455, 596, 756 |
| BspCNI | CTCAG | 4 cut(s) | 724, 934, 1003, 1038 |
| BspFNI | CGCG | 3 cut(s) | 284, 632, 1258 |
| BspLI | GGNNCC | 5 cut(s) | 6, 420, 502, 756, 817 |
| BspMI | ACCTGC | 1 cut(s) | 1165 |
| BspOI | GCTAGC | 1 cut(s) | 1067 |
| BspPI | GGATC | 3 cut(s) | 458, 562, 614 |
| BspT104I | TTCGAA | 1 cut(s) | 767 |
| BspT107I | GGYRCC | 2 cut(s) | 500, 815 |
| BspTNI | GGTCTC | 2 cut(s) | 62, 293 |
| BsrBI | CCGCTC | 2 cut(s) | 413, 434 |
| BsrDI | GCAATG | 1 cut(s) | 917 |
| BsrI | ACTGG | 1 cut(s) | 682 |
| BssECI | CCNNGG | 5 cut(s) | 72, 437, 819, 866, 879 |
| BssMI | GATC | 3 cut(s) | 463, 567, 606 |
| BssNI | GRCGYC | 3 cut(s) | 120, 501, 669 |
| BssT1I | CCWWGG | 1 cut(s) | 879 |
| Bst2UI | CCWGG | 2 cut(s) | 74, 700 |
| Bst4CI | ACNGT | 3 cut(s) | 349, 854, 910 |
| Bst6I | CTCTTC | 6 cut(s) | 96, 144, 180, 644, 866, 907 |
| BstACI | GRCGYC | 3 cut(s) | 120, 501, 669 |
| BstBI | TTCGAA | 1 cut(s) | 767 |
| BstC8I | GCNNGC | 3 cut(s) | 411, 432, 1065 |
| BstDEI | CTNAG | 7 cut(s) | 204, 732, 942, 1011, 1046, 1180, 1230 |
| BstF5I | GGATG | 6 cut(s) | 82, 329, 585, 937, 1159, 1249 |
| BstFNI | CGCG | 3 cut(s) | 284, 632, 1258 |
| BstH2I | RGCGCY | 3 cut(s) | 16, 451, 504 |
| BstHHI | GCGC | 5 cut(s) | 15, 450, 503, 632, 775 |
| BstKTI | GATC | 3 cut(s) | 466, 570, 609 |
| BstMAI | GTCTC | 4 cut(s) | 62, 293, 367, 507 |
| BstMBI | GATC | 3 cut(s) | 463, 567, 606 |
| BstMCI | CGRYCG | 2 cut(s) | 288, 456 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 431, 507 |
| BstNI | CCWGG | 2 cut(s) | 74, 700 |
| BstSCI | CCNGG | 7 cut(s) | 72, 290, 436, 437, 450, 698, 756 |
| BstSFI | CTRYAG | 1 cut(s) | 906 |
| BstSLI | GKGCMC | 1 cut(s) | 758 |
| BstUI | CGCG | 3 cut(s) | 284, 632, 1258 |
| BstV1I | GCAGC | 4 cut(s) | 22, 922, 994, 1072 |
| BstV2I | GAAGAC | 2 cut(s) | 60, 279 |
| BstZI | CGGCCG | 2 cut(s) | 285, 453 |
| BsuRI | GGCC | 5 cut(s) | 263, 287, 455, 596, 756 |
| BtgZI | GCGATG | 1 cut(s) | 1026 |
| BtsCI | GGATG | 6 cut(s) | 82, 329, 585, 937, 1159, 1249 |
| BveI | ACCTGC | 1 cut(s) | 1165 |
| Cac8I | GCNNGC | 3 cut(s) | 411, 432, 1065 |
| CciNI | GCGGCCGC | 1 cut(s) | 285 |
| CfoI | GCGC | 5 cut(s) | 15, 450, 503, 632, 775 |
| Cfr13I | GGNCC | 3 cut(s) | 754, 755, 1029 |
| Cfr9I | CCCGGG | 1 cut(s) | 437 |
| CseI | GACGC | 3 cut(s) | 71, 128, 290 |
| Csp6I | GTAC | 2 cut(s) | 718, 1036 |
| CviAII | CATG | 4 cut(s) | 625, 638, 776, 1220 |
| CviQI | GTAC | 2 cut(s) | 718, 1036 |
| DdeI | CTNAG | 7 cut(s) | 204, 732, 942, 1011, 1046, 1180, 1230 |
| DinI | GGCGCC | 1 cut(s) | 502 |
| DpnI | GATC | 3 cut(s) | 465, 569, 608 |
| DpnII | GATC | 3 cut(s) | 463, 567, 606 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1027 |
| EaeI | YGGCCR | 2 cut(s) | 285, 453 |
| EagI | CGGCCG | 2 cut(s) | 285, 453 |
| Eam1104I | CTCTTC | 6 cut(s) | 96, 144, 180, 644, 866, 907 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1027 |
| EarI | CTCTTC | 6 cut(s) | 96, 144, 180, 644, 866, 907 |
| EciI | GGCGGA | 3 cut(s) | 379, 525, 1011 |
| Ecl136II | GAGCTC | 1 cut(s) | 1134 |
| EclXI | CGGCCG | 2 cut(s) | 285, 453 |
| Eco130I | CCWWGG | 1 cut(s) | 879 |
| Eco24I | GRGCYC | 2 cut(s) | 758, 1136 |
| Eco31I | GGTCTC | 2 cut(s) | 62, 293 |
| Eco47I | GGWCC | 1 cut(s) | 1029 |
| Eco52I | CGGCCG | 2 cut(s) | 285, 453 |
| Eco53kI | GAGCTC | 1 cut(s) | 1134 |
| Eco57I | CTGAAG | 2 cut(s) | 593, 728 |
| Eco88I | CYCGRG | 2 cut(s) | 437, 481 |
| EcoICRI | GAGCTC | 1 cut(s) | 1134 |
| EcoO109I | RGGNCCY | 1 cut(s) | 754 |
| EcoRII | CCWGG | 2 cut(s) | 72, 698 |
| EcoT14I | CCWWGG | 1 cut(s) | 879 |
| EcoT22I | ATGCAT | 1 cut(s) | 1221 |
| EcoT38I | GRGCYC | 2 cut(s) | 758, 1136 |
| EgeI | GGCGCC | 1 cut(s) | 502 |
| EheI | GGCGCC | 1 cut(s) | 502 |
| ErhI | CCWWGG | 1 cut(s) | 879 |
| Esp3I | CGTCTC | 1 cut(s) | 507 |
| FaeI | CATG | 4 cut(s) | 628, 641, 779, 1223 |
| FaiI | YATR | 6 cut(s) | 626, 639, 723, 777, 1106, 1221 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 641, 673 |
| FatI | CATG | 4 cut(s) | 624, 637, 775, 1219 |
| FauI | CCCGC | 3 cut(s) | 40, 418, 439 |
| Fnu4HI | GCNGC | 7 cut(s) | 36, 285, 288, 936, 939, 1008, 1061 |
| FokI | GGATG | 6 cut(s) | 89, 316, 592, 944, 1166, 1256 |
| FriOI | GRGCYC | 2 cut(s) | 758, 1136 |
| Fsp4HI | GCNGC | 7 cut(s) | 36, 285, 288, 936, 939, 1008, 1061 |
| FspBI | CTAG | 2 cut(s) | 618, 1064 |
| GlaI | GCGC | 5 cut(s) | 14, 449, 502, 631, 774 |
| GluI | GCNGC | 7 cut(s) | 36, 285, 288, 936, 939, 1008, 1061 |
| HaeII | RGCGCY | 3 cut(s) | 16, 451, 504 |
| HaeIII | GGCC | 5 cut(s) | 263, 287, 455, 596, 756 |
| HapII | CCGG | 6 cut(s) | 291, 416, 422, 438, 452, 758 |
| HgaI | GACGC | 3 cut(s) | 71, 128, 290 |
| HhaI | GCGC | 5 cut(s) | 15, 450, 503, 632, 775 |
| Hin1I | GRCGYC | 3 cut(s) | 120, 501, 669 |
| Hin1II | CATG | 4 cut(s) | 628, 641, 779, 1223 |
| Hin6I | GCGC | 5 cut(s) | 13, 448, 501, 630, 773 |
| HinP1I | GCGC | 5 cut(s) | 13, 448, 501, 630, 773 |
| HindIII | AAGCTT | 3 cut(s) | 655, 1205, 1232 |
| HpaII | CCGG | 6 cut(s) | 291, 416, 422, 438, 452, 758 |
| HphI | GGTGA | 1 cut(s) | 337 |
| Hpy166II | GTNNAC | 1 cut(s) | 376 |
| Hpy188III | TCNNGA | 4 cut(s) | 128, 571, 646, 1201 |
| Hpy8I | GTNNAC | 1 cut(s) | 376 |
| Hpy99I | CGWCG | 6 cut(s) | 65, 122, 281, 284, 314, 521 |
| HpyAV | CCTTC | 8 cut(s) | 490, 568, 595, 655, 730, 763, 1131, 1255 |
| HpyCH4III | ACNGT | 3 cut(s) | 349, 854, 910 |
| HpyCH4IV | ACGT | 1 cut(s) | 669 |
| HpyCH4V | TGCA | 4 cut(s) | 845, 1060, 1174, 1219 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 431, 507 |
| HpyF3I | CTNAG | 7 cut(s) | 204, 732, 942, 1011, 1046, 1180, 1230 |
| HpySE526I | ACGT | 1 cut(s) | 669 |
| Hsp92I | GRCGYC | 3 cut(s) | 120, 501, 669 |
| Hsp92II | CATG | 4 cut(s) | 628, 641, 779, 1223 |
| HspAI | GCGC | 5 cut(s) | 13, 448, 501, 630, 773 |
| KasI | GGCGCC | 1 cut(s) | 500 |
| Kzo9I | GATC | 3 cut(s) | 463, 567, 606 |
| LmnI | GCTCC | 6 cut(s) | 10, 109, 418, 424, 439, 1131 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 922, 994, 1072 |
| LweI | GCATC | 2 cut(s) | 922, 1206 |
| MaeI | CTAG | 2 cut(s) | 618, 1064 |
| MaeII | ACGT | 1 cut(s) | 669 |
| MaeIII | GTNAC | 1 cut(s) | 620 |
| MalI | GATC | 3 cut(s) | 465, 569, 608 |
| MbiI | CCGCTC | 2 cut(s) | 413, 434 |
| MboI | GATC | 3 cut(s) | 463, 567, 606 |
| MfeI | CAATTG | 1 cut(s) | 1125 |
| MhlI | GDGCHC | 2 cut(s) | 758, 1136 |
| MluCI | AATT | 2 cut(s) | 1069, 1125 |
| Mly113I | GGCGCC | 1 cut(s) | 501 |
| MlyI | GAGTC | 6 cut(s) | 50, 314, 374, 463, 473, 1022 |
| MmeI | TCCRAC | 5 cut(s) | 84, 276, 333, 491, 1131 |
| Mph1103I | ATGCAT | 1 cut(s) | 1221 |
| MseI | TTAA | 1 cut(s) | 1002 |
| MslI | CAYNNNNRTG | 2 cut(s) | 726, 1081 |
| MspA1I | CMGCKG | 1 cut(s) | 35 |
| MspI | CCGG | 6 cut(s) | 291, 416, 422, 438, 452, 758 |
| MspR9I | CCNGG | 7 cut(s) | 74, 292, 438, 439, 452, 700, 758 |
| MunI | CAATTG | 1 cut(s) | 1125 |
| Mva1269I | GAATGC | 2 cut(s) | 205, 733 |
| MvaI | CCWGG | 2 cut(s) | 74, 700 |
| MvnI | CGCG | 3 cut(s) | 284, 632, 1258 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 431, 507 |
| NarI | GGCGCC | 1 cut(s) | 501 |
| NciI | CCSGG | 5 cut(s) | 292, 438, 439, 452, 758 |
| NdeII | GATC | 3 cut(s) | 463, 567, 606 |
| NheI | GCTAGC | 1 cut(s) | 1063 |
| NlaIII | CATG | 4 cut(s) | 628, 641, 779, 1223 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 420, 502, 756, 817 |
| NmeAIII | GCCGAG | 3 cut(s) | 481, 844, 891 |
| NotI | GCGGCCGC | 1 cut(s) | 285 |
| NsiI | ATGCAT | 1 cut(s) | 1221 |
| NspV | TTCGAA | 1 cut(s) | 767 |
| PaeR7I | CTCGAG | 1 cut(s) | 481 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 513 |
| PctI | GAATGC | 2 cut(s) | 205, 733 |
| PfeI | GAWTC | 4 cut(s) | 220, 257, 1052, 1108 |
| PflFI | GACNNNGTC | 1 cut(s) | 304 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 688 |
| PkrI | GCNGC | 7 cut(s) | 37, 286, 289, 937, 940, 1009, 1062 |
| PleI | GAGTC | 6 cut(s) | 50, 313, 374, 463, 473, 1021 |
| PluTI | GGCGCC | 1 cut(s) | 504 |
| PpsI | GAGTC | 6 cut(s) | 50, 313, 374, 463, 473, 1021 |
| Psp124BI | GAGCTC | 1 cut(s) | 1136 |
| Psp6I | CCWGG | 2 cut(s) | 72, 698 |
| PspGI | CCWGG | 2 cut(s) | 72, 698 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 420, 502, 756, 817 |
| PspOMI | GGGCCC | 1 cut(s) | 754 |
| PspPI | GGNCC | 3 cut(s) | 754, 755, 1029 |
| PspXI | VCTCGAGB | 1 cut(s) | 481 |
| PsyI | GACNNNGTC | 1 cut(s) | 304 |
| RsaI | GTAC | 2 cut(s) | 719, 1037 |
| RsaNI | GTAC | 2 cut(s) | 718, 1036 |
| RseI | CAYNNNNRTG | 2 cut(s) | 726, 1081 |
| SacI | GAGCTC | 1 cut(s) | 1136 |
| SaqAI | TTAA | 1 cut(s) | 1002 |
| SatI | GCNGC | 7 cut(s) | 36, 285, 288, 936, 939, 1008, 1061 |
| Sau3AI | GATC | 3 cut(s) | 463, 567, 606 |
| Sau96I | GGNCC | 3 cut(s) | 754, 755, 1029 |
| SchI | GAGTC | 6 cut(s) | 50, 314, 374, 463, 473, 1022 |
| ScrFI | CCNGG | 7 cut(s) | 74, 292, 438, 439, 452, 700, 758 |
| SduI | GDGCHC | 2 cut(s) | 758, 1136 |
| SetI | ASST | 9 cut(s) | 659, 672, 1065, 1085, 1136, 1163, 1179, 1209, 1236 |
| SfaNI | GCATC | 2 cut(s) | 922, 1206 |
| SfcI | CTRYAG | 1 cut(s) | 906 |
| SfoI | GGCGCC | 1 cut(s) | 502 |
| Sfr274I | CTCGAG | 1 cut(s) | 481 |
| SfuI | TTCGAA | 1 cut(s) | 767 |
| SinI | GGWCC | 1 cut(s) | 1029 |
| SlaI | CTCGAG | 1 cut(s) | 481 |
| SmaI | CCCGGG | 1 cut(s) | 439 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 726, 1081 |
| SmlI | CTYRAG | 1 cut(s) | 481 |
| SmoI | CTYRAG | 1 cut(s) | 481 |
| Sse9I | AATT | 2 cut(s) | 1069, 1125 |
| SspDI | GGCGCC | 1 cut(s) | 500 |
| SspMI | CTAG | 2 cut(s) | 618, 1064 |
| SstI | GAGCTC | 1 cut(s) | 1136 |
| StyD4I | CCNGG | 7 cut(s) | 72, 290, 436, 437, 450, 698, 756 |
| StyI | CCWWGG | 1 cut(s) | 879 |
| TaaI | ACNGT | 3 cut(s) | 349, 854, 910 |
| TaiI | ACGT | 1 cut(s) | 672 |
| TaqI | TCGA | 5 cut(s) | 443, 482, 609, 767, 800 |
| TaqII | GACCGA | 1 cut(s) | 317 |
| TasI | AATT | 2 cut(s) | 1069, 1125 |
| TauI | GCSGC | 3 cut(s) | 287, 290, 941 |
| TfiI | GAWTC | 4 cut(s) | 220, 257, 1052, 1108 |
| Tru1I | TTAA | 1 cut(s) | 1002 |
| Tru9I | TTAA | 1 cut(s) | 1002 |
| TseI | GCWGC | 4 cut(s) | 35, 935, 1007, 1060 |
| TspDTI | ATGAA | 4 cut(s) | 30, 93, 995, 1236 |
| TspMI | CCCGGG | 1 cut(s) | 437 |
| Tth111I | GACNNNGTC | 1 cut(s) | 304 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 688 |
| VpaK11BI | GGWCC | 1 cut(s) | 1029 |
| XhoI | CTCGAG | 1 cut(s) | 481 |
| XmaI | CCCGGG | 1 cut(s) | 437 |
| XspI | CTAG | 2 cut(s) | 618, 1064 |
| ZraI | GACGTC | 1 cut(s) | 670 |
| Zsp2I | ATGCAT | 1 cut(s) | 1221 |