RLG00000003445

Mediator-associated protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008960
Physical Location & Seq
Forward (+)
48593318 .. 48594739
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003445

Sequence Viewer

Length: 618 bp
ATGATGACTAGCAGAATCAGAGCACTAGTGAAAGCCATTCACTCTACTCCCACGCAGTCCGTTCTCTATCTCTCCGTGGAGGCTCTCAGGGTTTACGAAATCGAGAGGGAGAAGATATGGTTGCAAGTCATCTTGTACTCAAGGTTGAAGAAGAAGTACCATACCAATGCTGAGAAGGGCGAGAATGGGGAGGGCCCGGTGTTTTCGAAAGCGAATGAGTCAAAGTCGTTTGATTTGTCGAAGAAGATTTGGGGTGCTGAGGCTAATAGGGGAGATGATAGTGCAAAGTACAGTAGGAAGAAGCTGAGGAAGAGTGCCAAGGCTAACAACAACAACAACAACTCTTCTATAGTCTTGGCATTGCCTGTTTCGGATGCTGGGGCTGAGAGGAATGTGGAGAAGAAAGTAAAAGTGAAGGAGATGAATGTTGCTAATGGTGGAGTTAAGGCTGCTGAGCCCGATGACTTTTGGTCCAAGTACCCATCGCTAAGTGATTCTTTGCGGCTTGGAAATTGCTCATCAAGGTGGGAGCATTTGGAGAGAGTTATGAATGAGAAAATGCCTTCAATTGGGAGCTCAAAGGTTAAAGAGTGGGATGATAGGTGGAGGAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

206

Amino Acids

23.3

Weight (kDa)

9.75

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 47 - 85 1.4e-08 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 502
AfaI GTAC 4 cut(s) 137, 158, 290, 479
AfiI CCNNNNNNNGG 1 cut(s) 569
AgsI TTSAA 2 cut(s) 148, 567
AhdI GACNNNNNGTC 1 cut(s) 469
AhlI ACTAGT 1 cut(s) 25
AluBI AGCT 2 cut(s) 304, 576
AluI AGCT 2 cut(s) 304, 576
Alw21I GWGCWC 2 cut(s) 25, 578
AoxI GGCC 1 cut(s) 193
ApaI GGGCCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 449
AspS9I GGNCC 3 cut(s) 193, 194, 471
AsuC2I CCSGG 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 471
BaeGI GKGCMC 1 cut(s) 197
BanII GRGCYC 3 cut(s) 197, 459, 578
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
Bbv12I GWGCWC 2 cut(s) 25, 578
BbvCI CCTCAGC 2 cut(s) 258, 305
BbvI GCAGC 1 cut(s) 436
BccI CCATC 1 cut(s) 490
BcnI CCSGG 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 2 cut(s) 9, 26
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 2 cut(s) 450, 503
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 2 cut(s) 451, 504
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 471
BmeRI GACNNNNNGTC 1 cut(s) 469
BmgT120I GGNCC 3 cut(s) 193, 194, 471
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 364
Bpu10I CCTNAGC 2 cut(s) 258, 305
Bpu1102I GCTNAGC 1 cut(s) 453
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 75, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse3DI GCAATG 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 75, 318
BseGI GGATG 2 cut(s) 379, 601
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 6 cut(s) 100, 162, 249, 296, 375, 444
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 1 cut(s) 436
BseYI CCCAGC 1 cut(s) 377
BshFI GGCC 1 cut(s) 195
BsiHKAI GWGCWC 2 cut(s) 25, 578
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 569
BsnI GGCC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 206
Bsp120I GGGCCC 1 cut(s) 193
Bsp1286I GDGCHC 4 cut(s) 25, 197, 459, 578
Bsp1720I GCTNAGC 1 cut(s) 453
BspACI CCGC 1 cut(s) 502
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 6 cut(s) 99, 163, 250, 297, 376, 445
BspLI GGNNCC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 75, 318
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 2 cut(s) 305, 349
BstBI TTCGAA 1 cut(s) 206
BstDEI CTNAG 7 cut(s) 86, 171, 258, 305, 384, 453, 488
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 379, 601
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 379, 601
Cfr13I GGNCC 3 cut(s) 193, 194, 471
Csp6I GTAC 4 cut(s) 136, 157, 289, 478
CviQI GTAC 4 cut(s) 136, 157, 289, 478
DdeI CTNAG 7 cut(s) 86, 171, 258, 305, 384, 453, 488
DriI GACNNNNNGTC 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 305, 349
Eam1105I GACNNNNNGTC 1 cut(s) 469
EarI CTCTTC 2 cut(s) 305, 349
Ecl136II GAGCTC 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 3 cut(s) 197, 459, 578
Eco47I GGWCC 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 576
EcoICRI GAGCTC 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 3 cut(s) 197, 459, 578
ErhI CCWWGG 1 cut(s) 318
FaiI YATR 4 cut(s) 118, 162, 350, 548
FalI AAGNNNNNCTT 2 cut(s) 481, 513
Fnu4HI GCNGC 2 cut(s) 450, 503
FokI GGATG 2 cut(s) 386, 608
FriOI GRGCYC 3 cut(s) 197, 459, 578
Fsp4HI GCNGC 2 cut(s) 450, 503
FspBI CTAG 2 cut(s) 9, 26
GluI GCNGC 2 cut(s) 450, 503
GsaI CCCAGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 197
HinfI GANTC 3 cut(s) 15, 218, 494
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 20, 373
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 169, 409, 573
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 124, 284
HpyF3I CTNAG 7 cut(s) 86, 171, 258, 305, 384, 453, 488
LmnI GCTCC 2 cut(s) 529, 573
LpnPI CCDG 4 cut(s) 73, 210, 363, 378
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 9, 26
MboII GAAGA 9 cut(s) 124, 160, 163, 253, 256, 310, 322, 336, 412
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 4 cut(s) 25, 197, 459, 578
MluCI AATT 2 cut(s) 511, 567
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 7 cut(s) 73, 99, 184, 253, 300, 381, 600
MseI TTAA 2 cut(s) 444, 585
MslI CAYNNNNRTG 2 cut(s) 165, 523
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 567
NciI CCSGG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 206
PfeI GAWTC 2 cut(s) 15, 494
PkrI GCNGC 2 cut(s) 451, 504
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 195
PspOMI GGGCCC 1 cut(s) 193
PspPI GGNCC 3 cut(s) 193, 194, 471
RsaI GTAC 4 cut(s) 137, 158, 290, 479
RsaNI GTAC 4 cut(s) 136, 157, 289, 478
RseI CAYNNNNRTG 2 cut(s) 165, 523
SacI GAGCTC 1 cut(s) 578
SaqAI TTAA 2 cut(s) 444, 585
SatI GCNGC 2 cut(s) 450, 503
Sau96I GGNCC 3 cut(s) 193, 194, 471
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 4 cut(s) 25, 197, 459, 578
SetI ASST 6 cut(s) 146, 306, 527, 578, 585, 605
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 2 cut(s) 165, 523
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 2 cut(s) 511, 567
SsiI CCGC 1 cut(s) 502
SspMI CTAG 2 cut(s) 9, 26
SstI GAGCTC 1 cut(s) 578
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 3 cut(s) 102, 206, 239
TasI AATT 2 cut(s) 511, 567
TatI WGTACW 2 cut(s) 135, 288
TauI GCSGC 1 cut(s) 505
TfiI GAWTC 2 cut(s) 15, 494
Tru1I TTAA 2 cut(s) 444, 585
Tru9I TTAA 2 cut(s) 444, 585
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 2 cut(s) 437, 563
TspGWI ACGGA 2 cut(s) 49, 64
VpaK11BI GGWCC 1 cut(s) 471
XspI CTAG 2 cut(s) 9, 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.