Rmu_co8007914.1_g000001

Mediator-associated protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8007914.1
OG0008960
Physical Location & Seq
Forward (+)
1 .. 531
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8007914.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
gataatgaggaagaggagaatgtgaatgctaagaagcccgttgtgattccctcatcgtcagttgttccaaaccctcaatcggaatcggcctcctccgaagacgacgacgcggccgccgggtcggagaccgagtccgacgacatcaaccactcgccatccgcttccgatttcaccgtcaagcccattgtctccaagcccgtgaacgactcctcctccgccaagcccagcaagaagcccgctccggctccggcgaagcccgctcccgggtcgaagcgcccggccgagagcgatccgactccgaaagactcgaggaagaagaagaagggcgccaacggcggagacgacgaggacaccaaaaagggtcggctttggggcgaggacgatgagattgcgatcctgaaggggatgatagacttcaaggccaagaaggggatcgacccgtctagtaacatgggcgcgttccatgagttcttgaagagaagcttgaaggctgacgtcagcaagaaccagttgatggataagaccaggagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

177

Amino Acids

18.9

Weight (kDa)

5.82

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 514
AccBSI CCGCTC 2 cut(s) 239, 260
AccII CGCG 2 cut(s) 110, 458
AciI CCGC 7 cut(s) 110, 114, 159, 216, 237, 258, 336
AclWI GGATC 3 cut(s) 284, 388, 440
AcoI YGGCCR 2 cut(s) 111, 279
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 2 cut(s) 327, 495
AfiI CCNNNNNNNGG 5 cut(s) 79, 263, 264, 429, 514
AgsI TTSAA 3 cut(s) 418, 475, 487
AjnI CCWGG 1 cut(s) 524
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 483
AluI AGCT 1 cut(s) 483
Alw26I GTCTC 3 cut(s) 119, 193, 333
AlwI GGATC 3 cut(s) 284, 388, 440
Ama87I CYCGRG 2 cut(s) 263, 307
AoxI GGCC 4 cut(s) 87, 111, 279, 420
AspLEI GCGC 3 cut(s) 276, 329, 458
AsuC2I CCSGG 4 cut(s) 118, 264, 265, 278
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 2 cut(s) 263, 307
BanI GGYRCC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 105
BccI CCATC 2 cut(s) 163, 508
BceAI ACGGC 1 cut(s) 349
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 1 cut(s) 526
BcnI CCSGG 4 cut(s) 118, 264, 265, 278
BcoDI GTCTC 3 cut(s) 119, 193, 333
BfaI CTAG 1 cut(s) 444
BfoI RGCGCY 2 cut(s) 277, 330
BisI GCNGC 2 cut(s) 111, 114
BlsI GCNGC 2 cut(s) 112, 115
Bme1390I CCNGG 5 cut(s) 118, 264, 265, 278, 526
BmeT110I CYCGRG 2 cut(s) 263, 307
BmiI GGNNCC 2 cut(s) 246, 328
BmrFI CCNGG 5 cut(s) 118, 264, 265, 278, 526
BpiI GAAGAC 1 cut(s) 105
BpuMI CCSGG 4 cut(s) 118, 264, 265, 278
BsaBI GATNNNNATC 1 cut(s) 392
BsaHI GRCGYC 2 cut(s) 327, 495
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 263
BsaXI ACNNNNNCTCC 6 cut(s) 116, 146, 194, 197, 224, 227
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 263, 264, 429, 514
Bse1I ACTGG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 392
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 155, 411
BseJI GATNNNNATC 1 cut(s) 392
BseLI CCNNNNNNNGG 5 cut(s) 79, 263, 264, 429, 514
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 4 cut(s) 29, 82, 199, 202
BseX3I CGGCCG 2 cut(s) 111, 279
BseYI CCCAGC 1 cut(s) 224
Bsh1236I CGCG 2 cut(s) 110, 458
Bsh1285I CGRYCG 2 cut(s) 114, 282
BshFI GGCC 4 cut(s) 89, 113, 281, 422
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 2 cut(s) 114, 282
BsiHKCI CYCGRG 2 cut(s) 263, 307
BsiSI CCGG 5 cut(s) 117, 242, 248, 264, 278
BslI CCNNNNNNNGG 5 cut(s) 79, 263, 264, 429, 514
BsmAI GTCTC 3 cut(s) 119, 193, 333
BsmBI CGTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 4 cut(s) 89, 113, 281, 422
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 2 cut(s) 263, 307
Bsp143I GATC 3 cut(s) 289, 393, 432
BspACI CCGC 7 cut(s) 110, 114, 159, 216, 237, 258, 336
BspANI GGCC 4 cut(s) 89, 113, 281, 422
BspFNI CGCG 2 cut(s) 110, 458
BspLI GGNNCC 2 cut(s) 246, 328
BspPI GGATC 3 cut(s) 284, 388, 440
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 119
BsrBI CCGCTC 2 cut(s) 239, 260
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 289, 393, 432
BssNI GRCGYC 2 cut(s) 327, 495
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 6, 470
BstACI GRCGYC 2 cut(s) 327, 495
BstC8I GCNNGC 2 cut(s) 237, 258
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 2 cut(s) 155, 411
BstFNI CGCG 2 cut(s) 110, 458
BstH2I RGCGCY 2 cut(s) 277, 330
BstHHI GCGC 3 cut(s) 276, 329, 458
BstKTI GATC 3 cut(s) 292, 396, 435
BstMAI GTCTC 3 cut(s) 119, 193, 333
BstMBI GATC 3 cut(s) 289, 393, 432
BstMCI CGRYCG 2 cut(s) 114, 282
BstMWI GCNNNNNNNGC 2 cut(s) 257, 333
BstNI CCWGG 1 cut(s) 526
BstSCI CCNGG 5 cut(s) 116, 262, 263, 276, 524
BstUI CGCG 2 cut(s) 110, 458
BstV2I GAAGAC 1 cut(s) 105
BstZI CGGCCG 2 cut(s) 111, 279
BsuRI GGCC 4 cut(s) 89, 113, 281, 422
BtsCI GGATG 2 cut(s) 155, 411
Cac8I GCNNGC 2 cut(s) 237, 258
CciNI GCGGCCGC 1 cut(s) 111
CfoI GCGC 3 cut(s) 276, 329, 458
Cfr9I CCCGGG 1 cut(s) 263
CseI GACGC 1 cut(s) 116
CviAII CATG 2 cut(s) 451, 464
DdeI CTNAG 1 cut(s) 30
DinI GGCGCC 1 cut(s) 328
DpnI GATC 3 cut(s) 291, 395, 434
DpnII GATC 3 cut(s) 289, 393, 432
EaeI YGGCCR 2 cut(s) 111, 279
EagI CGGCCG 2 cut(s) 111, 279
Eam1104I CTCTTC 2 cut(s) 6, 470
EarI CTCTTC 2 cut(s) 6, 470
EciI GGCGGA 2 cut(s) 205, 351
EclXI CGGCCG 2 cut(s) 111, 279
Eco31I GGTCTC 1 cut(s) 119
Eco52I CGGCCG 2 cut(s) 111, 279
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 2 cut(s) 263, 307
EcoRII CCWGG 1 cut(s) 524
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 2 cut(s) 454, 467
FaiI YATR 2 cut(s) 452, 465
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 2 cut(s) 450, 463
FauI CCCGC 2 cut(s) 244, 265
Fnu4HI GCNGC 2 cut(s) 111, 114
FokI GGATG 2 cut(s) 142, 418
Fsp4HI GCNGC 2 cut(s) 111, 114
FspBI CTAG 1 cut(s) 444
GlaI GCGC 3 cut(s) 275, 328, 457
GluI GCNGC 2 cut(s) 111, 114
GsaI CCCAGC 1 cut(s) 228
HaeII RGCGCY 2 cut(s) 277, 330
HaeIII GGCC 4 cut(s) 89, 113, 281, 422
HapII CCGG 5 cut(s) 117, 242, 248, 264, 278
HgaI GACGC 1 cut(s) 116
HhaI GCGC 3 cut(s) 276, 329, 458
Hin1I GRCGYC 2 cut(s) 327, 495
Hin1II CATG 2 cut(s) 454, 467
Hin6I GCGC 3 cut(s) 274, 327, 456
HinP1I GCGC 3 cut(s) 274, 327, 456
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 6 cut(s) 46, 83, 131, 206, 295, 305
HpaII CCGG 5 cut(s) 117, 242, 248, 264, 278
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 7 cut(s) 82, 97, 124, 136, 166, 294, 300
Hpy188III TCNNGA 2 cut(s) 397, 472
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 4 cut(s) 107, 110, 140, 347
HpyAV CCTTC 4 cut(s) 316, 394, 421, 481
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 333
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 2 cut(s) 327, 495
Hsp92II CATG 2 cut(s) 454, 467
HspAI GCGC 3 cut(s) 274, 327, 456
KasI GGCGCC 1 cut(s) 326
Kzo9I GATC 3 cut(s) 289, 393, 432
LmnI GCTCC 3 cut(s) 244, 250, 265
LpnPI CCDG 9 cut(s) 130, 238, 255, 261, 277, 291, 410, 511, 521
MaeI CTAG 1 cut(s) 444
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 446
MalI GATC 3 cut(s) 291, 395, 434
MbiI CCGCTC 2 cut(s) 239, 260
MboI GATC 3 cut(s) 289, 393, 432
MboII GAAGA 6 cut(s) 23, 110, 325, 328, 331, 487
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 4 cut(s) 140, 200, 289, 299
MmeI TCCRAC 3 cut(s) 102, 159, 317
MspI CCGG 5 cut(s) 117, 242, 248, 264, 278
MspR9I CCNGG 5 cut(s) 118, 264, 265, 278, 526
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 526
MvnI CGCG 2 cut(s) 110, 458
MwoI GCNNNNNNNGC 2 cut(s) 257, 333
NarI GGCGCC 1 cut(s) 327
NciI CCSGG 4 cut(s) 118, 264, 265, 278
NdeII GATC 3 cut(s) 289, 393, 432
NlaIII CATG 2 cut(s) 454, 467
NlaIV GGNNCC 2 cut(s) 246, 328
NmeAIII GCCGAG 1 cut(s) 307
NotI GCGGCCGC 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 46, 83
PflFI GACNNNGTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 514
PkrI GCNGC 2 cut(s) 112, 115
PleI GAGTC 4 cut(s) 139, 200, 289, 299
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 4 cut(s) 139, 200, 289, 299
Psp6I CCWGG 1 cut(s) 524
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 246, 328
PspXI VCTCGAGB 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 130
SatI GCNGC 2 cut(s) 111, 114
Sau3AI GATC 3 cut(s) 289, 393, 432
SchI GAGTC 4 cut(s) 140, 200, 289, 299
ScrFI CCNGG 5 cut(s) 118, 264, 265, 278, 526
SetI ASST 2 cut(s) 485, 498
SfoI GGCGCC 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 307
SmaI CCCGGG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SsiI CCGC 7 cut(s) 110, 114, 159, 216, 237, 258, 336
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 5 cut(s) 116, 262, 263, 276, 524
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 498
TaqI TCGA 3 cut(s) 269, 308, 435
TaqII GACCGA 1 cut(s) 143
TauI GCSGC 2 cut(s) 113, 116
TfiI GAWTC 2 cut(s) 46, 83
TspMI CCCGGG 1 cut(s) 263
Tth111I GACNNNGTC 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 514
XhoI CTCGAG 1 cut(s) 307
XmaI CCCGGG 1 cut(s) 263
XspI CTAG 1 cut(s) 444
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.