AT4G08280

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007979
Physical Location & Seq
Forward (+)
5230245 .. 5232196
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08280.2

Sequence Viewer

Length: 381 bp
ATGGCAGCAGCGATATCAGCGACTTTGGTATTCGCTGCAAGACGACGTCCATTGTTCTGTAGCTTATCATCATCGTCTTCTTCGAAACCAAACACGAGAAAGCTTGTTCTATACTCCAAACCTGGTTGTTGCCTCTGCGATGGTCTTAAAGAGAAGCTTCACGCTGCCTTCACTCTCTCCACCGGTCCTGATTCACTCAACGACGTTACTCTTCAGGTAAGAGATATAACTACGAATCCCGAGTGGGAACGAGCGTATCAGTATGAGATACCAGTGTTGGCTAAAGAGAATTCTGATGGGAAAGAGGAAGTTTTACCGAGGTTATCTCCACGTTTAAGTGCAGAACTCATTCAGAAGAAGCTACTTGCTGCCTTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

126

Amino Acids

13.84

Weight (kDa)

8.98

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 42 - 129 7.7e-22 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 46
AgeI ACCGGT 1 cut(s) 182
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 4 cut(s) 63, 103, 157, 361
AluI AGCT 4 cut(s) 63, 103, 157, 361
Ama87I CYCGRG 1 cut(s) 239
ApeKI GCWGC 5 cut(s) 5, 8, 35, 164, 368
ApoI RAATTY 1 cut(s) 289
AsiGI ACCGGT 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 185
BaeI ACNNNNGTAYC 4 cut(s) 239, 260, 272, 293
BauI CACGAG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 5 cut(s) 17, 20, 22, 151, 355
BccI CCATC 2 cut(s) 134, 290
BciT130I CCWGG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 58
BisI GCNGC 5 cut(s) 6, 9, 36, 165, 369
BlsI GCNGC 5 cut(s) 7, 10, 37, 166, 370
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 310, 342
Bpu14I TTCGAA 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 5 cut(s) 17, 20, 22, 151, 355
BsgI GTGCAG 1 cut(s) 360
BshTI ACCGGT 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 83
BspT104I TTCGAA 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 317
BssNI GRCGYC 1 cut(s) 46
BssSI CACGAG 1 cut(s) 94
Bst2BI CACGAG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 5 cut(s) 17, 20, 22, 151, 355
BstV2I GAAGAC 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 185
CsiI ACCWGGT 1 cut(s) 121
CspAI ACCGGT 1 cut(s) 182
CviJI RGCY 5 cut(s) 63, 103, 157, 281, 361
CviKI_1 RGCY 5 cut(s) 63, 103, 157, 281, 361
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 121
EcoRV GATATC 1 cut(s) 15
FaiI YATR 3 cut(s) 112, 227, 264
FalI AAGNNNNNCTT 2 cut(s) 141, 173
Fnu4HI GCNGC 5 cut(s) 6, 9, 36, 165, 369
Fsp4HI GCNGC 5 cut(s) 6, 9, 36, 165, 369
GluI GCNGC 5 cut(s) 6, 9, 36, 165, 369
HapII CCGG 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 46
HindIII AAGCTT 2 cut(s) 101, 155
HinfI GANTC 2 cut(s) 191, 235
HpaII CCGG 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 295, 354
Hpy188III TCNNGA 2 cut(s) 188, 239
Hpy99I CGWCG 2 cut(s) 48, 206
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 3 cut(s) 46, 204, 331
HpyCH4V TGCA 2 cut(s) 38, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpySE526I ACGT 3 cut(s) 46, 204, 331
Hsp92I GRCGYC 1 cut(s) 46
LpnPI CCDG 6 cut(s) 108, 135, 196, 200, 201, 285
Lsp1109I GCAGC 5 cut(s) 17, 20, 22, 151, 355
MabI ACCWGGT 1 cut(s) 121
MaeII ACGT 3 cut(s) 46, 204, 331
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 4 cut(s) 69, 72, 203, 367
MluCI AATT 1 cut(s) 289
MnlI CCTC 3 cut(s) 143, 298, 312
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 2 cut(s) 147, 335
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 17
NspV TTCGAA 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 191, 235
PflFI GACNNNGTC 1 cut(s) 45
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 5 cut(s) 7, 10, 37, 166, 370
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 147, 335
SatI GCNGC 5 cut(s) 6, 9, 36, 165, 369
Sau96I GGNCC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 123
SexAI ACCWGGT 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 1 cut(s) 185
Sse9I AATT 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 121
TaiI ACGT 3 cut(s) 49, 207, 334
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 289
TfiI GAWTC 2 cut(s) 191, 235
Tru1I TTAA 2 cut(s) 147, 335
Tru9I TTAA 2 cut(s) 147, 335
TscAI CASTG 1 cut(s) 279
TseI GCWGC 5 cut(s) 5, 8, 35, 164, 368
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 348
ZraI GACGTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.