RLG00000026385

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007979
Physical Location & Seq
Forward (+)
2618967 .. 2621658
2692 bp
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UTR
Exon/CDS
Intron
RLM00000026385

Sequence Viewer

Length: 420 bp
ATGGCCATTGCAGCAGCGACAATGGCTCTGGCCAGACCGACCTCGACTGCTCTGCTAACAACAACACACAGGGCCAACTGGGTCTTCACTCCTTTCGCTGTTTCTTATTCCTCTTCTTCTTCTTCAAAACCTTCAAGAGCTCTCATTCTCTACTCCAAGCCCGGCTGCTGTTTGTGCGATGGCCTCAAGGAAAAGCTTCAGGCCGCCTTCTTACTCTCCGGCCCCAATTCCATTCACGATGTTGATTTACAGATAAGGGATATTACAAGCAATCCTGAGTGGGAAAGAGCTTACCAGTATGAGATACCTGTTTTGGCTAGAGTGCTATCTGATGGCACTGAGGAAACTCTACCTAGATTATCTCCTCGTCTTGGAGTGGAAATGGTTCAGAAGAAAATAGCTGCAGCCTTGAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

140

Amino Acids

15.17

Weight (kDa)

8.86

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 48 - 133 1.6e-20 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 204
AcoI YGGCCR 2 cut(s) 3, 30
AcuI CTGAAG 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 126, 135, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 140, 196, 290, 401
AluI AGCT 4 cut(s) 140, 196, 290, 401
Alw21I GWGCWC 1 cut(s) 142
AoxI GGCC 6 cut(s) 3, 30, 72, 181, 201, 220
ApeKI GCWGC 5 cut(s) 11, 14, 165, 401, 404
Asp700I GAANNNNTTC 2 cut(s) 195, 384
AspS9I GGNCC 2 cut(s) 72, 221
AsuC2I CCSGG 1 cut(s) 162
BalI TGGCCA 2 cut(s) 5, 32
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 5 cut(s) 23, 26, 152, 388, 416
BccI CCATC 2 cut(s) 173, 326
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 2 cut(s) 318, 354
BfmI CTRYAG 1 cut(s) 402
BisI GCNGC 6 cut(s) 12, 15, 166, 204, 402, 405
BlsI GCNGC 6 cut(s) 13, 16, 167, 205, 403, 406
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 72, 221
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 83, 295
Bse3DI GCAATG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 2 cut(s) 267, 330
BseNI ACTGG 2 cut(s) 83, 295
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 5 cut(s) 23, 26, 152, 388, 416
BshFI GGCC 6 cut(s) 5, 32, 74, 183, 203, 222
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 162, 219
BslI CCNNNNNNNGG 1 cut(s) 371
BsnI GGCC 6 cut(s) 5, 32, 74, 183, 203, 222
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 204
BspANI GGCC 6 cut(s) 5, 32, 74, 183, 203, 222
BspCNI CTCAG 2 cut(s) 268, 331
BspLI GGNNCC 1 cut(s) 223
BspMAI CTGCAG 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 2 cut(s) 83, 295
Bst6I CTCTTC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 276, 339
BstMWI GCNNNNNNNGC 3 cut(s) 11, 23, 174
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 5 cut(s) 23, 26, 152, 388, 416
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 6 cut(s) 5, 32, 74, 183, 203, 222
BtgZI GCGATG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 72, 221
DdeI CTNAG 2 cut(s) 276, 339
EaeI YGGCCR 2 cut(s) 3, 30
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 142
FaiI YATR 1 cut(s) 300
Fnu4HI GCNGC 6 cut(s) 12, 15, 166, 204, 402, 405
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 6 cut(s) 12, 15, 166, 204, 402, 405
FspBI CTAG 2 cut(s) 318, 354
GluI GCNGC 6 cut(s) 12, 15, 166, 204, 402, 405
HaeIII GGCC 6 cut(s) 5, 32, 74, 183, 203, 222
HapII CCGG 2 cut(s) 162, 219
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 2 cut(s) 162, 219
Hpy188I TCNGA 2 cut(s) 331, 390
Hpy188III TCNNGA 3 cut(s) 135, 236, 275
HpyAV CCTTC 2 cut(s) 141, 217
HpyCH4V TGCA 2 cut(s) 11, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 23, 174
HpyF3I CTNAG 2 cut(s) 276, 339
Lsp1109I GCAGC 5 cut(s) 23, 26, 152, 388, 416
MaeI CTAG 2 cut(s) 318, 354
MboII GAAGA 6 cut(s) 76, 105, 108, 111, 114, 403
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 2 cut(s) 5, 32
MluCI AATT 1 cut(s) 226
MluNI TGGCCA 2 cut(s) 5, 32
MnlI CCTC 5 cut(s) 52, 121, 194, 334, 375
Mox20I TGGCCA 2 cut(s) 5, 32
MroXI GAANNNNTTC 2 cut(s) 195, 384
MscI TGGCCA 2 cut(s) 5, 32
Msp20I TGGCCA 2 cut(s) 5, 32
MspI CCGG 2 cut(s) 162, 219
MspR9I CCNGG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 11, 23, 174
NciI CCSGG 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 195, 384
PkrI GCNGC 6 cut(s) 13, 16, 167, 205, 403, 406
Psp124BI GAGCTC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 72, 221
PstI CTGCAG 1 cut(s) 406
SacI GAGCTC 1 cut(s) 142
SatI GCNGC 6 cut(s) 12, 15, 166, 204, 402, 405
Sau96I GGNCC 2 cut(s) 72, 221
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 142
SetI ASST 8 cut(s) 44, 133, 142, 198, 292, 310, 355, 403
SfcI CTRYAG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 226
SsiI CCGC 1 cut(s) 204
SspMI CTAG 2 cut(s) 318, 354
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 160
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 52
TasI AATT 1 cut(s) 226
TauI GCSGC 1 cut(s) 206
TscAI CASTG 1 cut(s) 343
TseI GCWGC 5 cut(s) 11, 14, 165, 401, 404
TspRI CASTG 1 cut(s) 343
XmnI GAANNNNTTC 2 cut(s) 195, 384
XspI CTAG 2 cut(s) 318, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.