Rh6BG373200

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007979
Physical Location & Seq
Forward (+)
60252838 .. 60256827
3990 bp
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UTR
Exon/CDS
Intron
Rh6BG373200.1

Sequence Viewer

Length: 405 bp
ATGGCCATTGCAGCAGCGACAATGGCTCTGGCCAGAGCGACCTCGACTGCTGCTCTGCTAACAACAACAACAACACACAGGGCCAACTGGGTCTTCACTCCTTTCGCTGTTTCTTATTCTTCTTCAAAACCTTCAAGAGCTCTCATTCTCTACTCCAAGCCGGGCTGCTGTTTGTGCGATGGCCTCAAAGAAAAGCTTCAGGCCGCCTTCTTACTCTCCGGCCCTGATTCCATTCACGATGTGGATTTACAGATAAGGGATATTACAAGCAATCCTGAGTGGGAAAGAGCTTACCAGTATGAGATACCTGTTTTGGCTAGAGTGCTATCTGATGGCACTGAGGTTAGTTTCAACTTCAATTTTTGTAATGCACTGGTTTTGCATTTCGGAAAGTTCTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

134

Amino Acids

14.68

Weight (kDa)

6.81

Isoelectric Point (pI)

23.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 48 - 114 1.3e-18 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 204
AcoI YGGCCR 2 cut(s) 3, 30
AcuI CTGAAG 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 126, 135, 352, 358
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 3 cut(s) 140, 196, 290
AluI AGCT 3 cut(s) 140, 196, 290
Alw21I GWGCWC 1 cut(s) 142
AoxI GGCC 6 cut(s) 3, 30, 81, 181, 201, 220
ApeKI GCWGC 4 cut(s) 11, 14, 50, 165
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 81, 221
AsuC2I CCSGG 1 cut(s) 162
BalI TGGCCA 2 cut(s) 5, 32
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 4 cut(s) 23, 26, 37, 152
BccI CCATC 2 cut(s) 173, 326
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 318
BisI GCNGC 5 cut(s) 12, 15, 51, 166, 204
BlsI GCNGC 5 cut(s) 13, 16, 52, 167, 205
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 81, 221
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 162
Bse1I ACTGG 3 cut(s) 92, 295, 378
Bse3DI GCAATG 1 cut(s) 6
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 2 cut(s) 267, 330
BseNI ACTGG 3 cut(s) 92, 295, 378
BseXI GCAGC 4 cut(s) 23, 26, 37, 152
BshFI GGCC 6 cut(s) 5, 32, 83, 183, 203, 222
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 161, 219
BsnI GGCC 6 cut(s) 5, 32, 83, 183, 203, 222
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 204
BspANI GGCC 6 cut(s) 5, 32, 83, 183, 203, 222
BspCNI CTCAG 2 cut(s) 268, 331
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 3 cut(s) 92, 295, 378
BstDEI CTNAG 2 cut(s) 276, 339
BstMWI GCNNNNNNNGC 3 cut(s) 11, 23, 174
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 4 cut(s) 23, 26, 37, 152
BstV2I GAAGAC 1 cut(s) 85
BsuRI GGCC 6 cut(s) 5, 32, 83, 183, 203, 222
BtgZI GCGATG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 336, 371
Cfr13I GGNCC 2 cut(s) 81, 221
DdeI CTNAG 2 cut(s) 276, 339
DraIII CACNNNGTG 1 cut(s) 241
EaeI YGGCCR 2 cut(s) 3, 30
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 142
FaiI YATR 1 cut(s) 300
FalI AAGNNNNNCTT 2 cut(s) 180, 212
Fnu4HI GCNGC 5 cut(s) 12, 15, 51, 166, 204
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 5 cut(s) 12, 15, 51, 166, 204
FspBI CTAG 1 cut(s) 318
GluI GCNGC 5 cut(s) 12, 15, 51, 166, 204
HaeIII GGCC 6 cut(s) 5, 32, 83, 183, 203, 222
HapII CCGG 2 cut(s) 161, 219
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 161, 219
Hpy188I TCNGA 2 cut(s) 331, 389
Hpy188III TCNNGA 3 cut(s) 135, 236, 275
HpyAV CCTTC 2 cut(s) 141, 217
HpyCH4V TGCA 3 cut(s) 11, 371, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 23, 174
HpyF3I CTNAG 2 cut(s) 276, 339
Lsp1109I GCAGC 4 cut(s) 23, 26, 37, 152
MaeI CTAG 1 cut(s) 318
MboII GAAGA 3 cut(s) 85, 111, 114
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 2 cut(s) 5, 32
MluCI AATT 2 cut(s) 358, 399
MluNI TGGCCA 2 cut(s) 5, 32
MnlI CCTC 3 cut(s) 52, 194, 334
Mox20I TGGCCA 2 cut(s) 5, 32
MroXI GAANNNNTTC 1 cut(s) 195
MscI TGGCCA 2 cut(s) 5, 32
Msp20I TGGCCA 2 cut(s) 5, 32
MspI CCGG 2 cut(s) 161, 219
MspR9I CCNGG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 11, 23, 174
NciI CCSGG 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 5 cut(s) 13, 16, 52, 167, 205
Psp124BI GAGCTC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 81, 221
SacI GAGCTC 1 cut(s) 142
SatI GCNGC 5 cut(s) 12, 15, 51, 166, 204
Sau96I GGNCC 2 cut(s) 81, 221
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 142
SetI ASST 7 cut(s) 44, 133, 142, 198, 292, 310, 345
Sse9I AATT 2 cut(s) 358, 399
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 160
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 358, 399
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 2 cut(s) 343, 378
TseI GCWGC 4 cut(s) 11, 14, 50, 165
TspRI CASTG 2 cut(s) 343, 378
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.