pycom15g31570

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007979
Physical Location & Seq
Reverse (-)
30034334 .. 30036719
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g31570.1

Sequence Viewer

Length: 438 bp
ATGGCCATTGCAGCAGTGGCGACGGCGACAATGGCACTGGCAGCAAGGCCAGCCTCGAATTTGTTCCTAACACCACACAGGGCGAGGTGGGTCTTCACCCCTTTTGCCGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGCCTTCACGAGCACTCATTCTCTACTCGAAGTCCGGATGCTGTTTGTGCGATGGCCTCAAAGAAAAACTTCAGGCCGCTTTCTTACTTTCCGGCCCTGATTCCCTCCACGACGTCGATTTGGAGGTGAGGGATATTGCGAGCAATCGAGAGTGGGAAAGAGCTTACCAGTATGAGATACCAGTTTTGGCCAGAGTGTTATCTGATGGCACTGAGGAAACTCTCCCCAGATCATCTCCTCGCCTTGGAGTGGAGCTGGTTCAGAAGAAAATAGCTGCTGCTTTCAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

146

Amino Acids

15.69

Weight (kDa)

8.88

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 54 - 139 6.6e-20 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 1 cut(s) 222
AcoI YGGCCR 2 cut(s) 3, 333
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 389, 394
AgsI TTSAA 2 cut(s) 144, 430
AluBI AGCT 3 cut(s) 308, 400, 419
AluI AGCT 3 cut(s) 308, 400, 419
Alw21I GWGCWC 1 cut(s) 160
Aor13HI TCCGGA 1 cut(s) 179
AoxI GGCC 6 cut(s) 3, 47, 199, 219, 238, 333
ApeKI GCWGC 4 cut(s) 11, 41, 419, 422
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 2 cut(s) 62, 213
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 88, 283
BalI TGGCCA 2 cut(s) 5, 335
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 4 cut(s) 23, 53, 406, 409
BccI CCATC 2 cut(s) 191, 344
BceAI ACGGC 2 cut(s) 39, 92
BisI GCNGC 5 cut(s) 12, 42, 222, 420, 423
BlsI GCNGC 5 cut(s) 13, 43, 223, 421, 424
BmgT120I GGNCC 1 cut(s) 239
BmsI GCATC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 394
Bse1I ACTGG 3 cut(s) 42, 313, 326
Bse3DI GCAATG 1 cut(s) 6
BseAI TCCGGA 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 389, 394
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 3 cut(s) 42, 313, 326
BseRI GAGGAG 1 cut(s) 372
BseXI GCAGC 4 cut(s) 23, 53, 406, 409
BshFI GGCC 6 cut(s) 5, 49, 201, 221, 240, 335
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 180, 237
BslI CCNNNNNNNGG 2 cut(s) 389, 394
BsnI GGCC 6 cut(s) 5, 49, 201, 221, 240, 335
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 1 cut(s) 374
BspACI CCGC 1 cut(s) 222
BspANI GGCC 6 cut(s) 5, 49, 201, 221, 240, 335
BspCNI CTCAG 1 cut(s) 349
BspEI TCCGGA 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 3 cut(s) 42, 313, 326
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 1 cut(s) 374
BssNI GRCGYC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 388
Bst2BI CACGAG 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 51, 286
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 188
BstKTI GATC 1 cut(s) 377
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 6 cut(s) 11, 17, 32, 41, 50, 192
BstV1I GCAGC 4 cut(s) 23, 53, 406, 409
BstV2I GAAGAC 1 cut(s) 85
BsuRI GGCC 6 cut(s) 5, 49, 201, 221, 240, 335
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 35, 354
Cac8I GCNNGC 2 cut(s) 51, 286
Cfr13I GGNCC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
EaeI YGGCCR 2 cut(s) 3, 333
Eco130I CCWWGG 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 388
FaiI YATR 1 cut(s) 318
FalI AAGNNNNNCTT 2 cut(s) 198, 230
Fnu4HI GCNGC 5 cut(s) 12, 42, 222, 420, 423
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 5 cut(s) 12, 42, 222, 420, 423
GluI GCNGC 5 cut(s) 12, 42, 222, 420, 423
HaeIII GGCC 6 cut(s) 5, 49, 201, 221, 240, 335
HapII CCGG 2 cut(s) 180, 237
Hin1I GRCGYC 1 cut(s) 258
HinfI GANTC 1 cut(s) 245
HpaII CCGG 2 cut(s) 180, 237
HphI GGTGA 2 cut(s) 88, 283
Hpy188I TCNGA 2 cut(s) 349, 408
Hpy188III TCNNGA 3 cut(s) 153, 180, 293
Hpy99I CGWCG 3 cut(s) 25, 260, 263
HpyAV CCTTC 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 17, 32, 41, 50, 192
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 258
Kpn2I TCCGGA 1 cut(s) 179
Kzo9I GATC 1 cut(s) 374
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 4 cut(s) 23, 53, 406, 409
LweI GCATC 1 cut(s) 173
MaeII ACGT 1 cut(s) 258
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 160
MlsI TGGCCA 2 cut(s) 5, 335
MluCI AATT 1 cut(s) 58
MluNI TGGCCA 2 cut(s) 5, 335
MnlI CCTC 8 cut(s) 64, 78, 212, 260, 262, 267, 352, 393
Mox20I TGGCCA 2 cut(s) 5, 335
MroI TCCGGA 1 cut(s) 179
MroXI GAANNNNTTC 2 cut(s) 62, 213
MscI TGGCCA 2 cut(s) 5, 335
Msp20I TGGCCA 2 cut(s) 5, 335
MspI CCGG 2 cut(s) 180, 237
MwoI GCNNNNNNNGC 6 cut(s) 11, 17, 32, 41, 50, 192
NdeII GATC 1 cut(s) 374
PdmI GAANNNNTTC 2 cut(s) 62, 213
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 5 cut(s) 13, 43, 223, 421, 424
PspPI GGNCC 1 cut(s) 239
SatI GCNGC 5 cut(s) 12, 42, 222, 420, 423
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 160
SetI ASST 6 cut(s) 89, 261, 273, 310, 402, 421
SfaNI GCATC 1 cut(s) 173
Sse9I AATT 1 cut(s) 58
SsiI CCGC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 388
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 56, 173, 261, 292
TasI AATT 1 cut(s) 58
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 1 cut(s) 245
TscAI CASTG 3 cut(s) 21, 42, 361
TseI GCWGC 4 cut(s) 11, 41, 419, 422
TspRI CASTG 3 cut(s) 21, 42, 361
XapI RAATTY 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 62, 213
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.