Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007979

Physical Location & Seq

Genomic Coordinates Reverse (-)

13287790 .. 13290361

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTATTGCAGCAGCAGCGACGGCGACAATGGCACTGGCGGCAAGGCCAGCCTCGAATTTGTTGCTAACAGCACGCAGGGCGAGGTGGGTCTTCACCCCTTTTGCCGTTTCTTCTTCTTTCTCTTCTTCTTCTTCAAAGCCTTCAAGAGCACTCATTCTCTACTCCAAGCCCGGATGCTGTTTGTGCGATGGCCTCAAAGAAAAACTTCAGGCCGCTTTCTTACTTTCCGGTCCTGAGTCCCTCCACGACGTTGATTTTCAGGTTAGGGATATTACAAGCAATCCAGAGTGGGAAAGTGCTTATCAGTTTGAGATACCAGTGTTGGCCAGAGTGTTATCTGATGGCACTGAGGAAACTCTACCCAGATTATCTCCCCGTCTTGGAGTGGAGCTTGTTCAGAAGAAAATATCTGCTGCCTTGAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF836

Protein Analysis

144

Amino Acids

15.49

Weight (kDa)

8.88

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08280 AT4G08280 AT4G08280
fragaria_vesca	FvH4_2g26680 FvH4_2g26680
malus_domestica	MD08G1165800.v1.1
prunus_persica	Prupe.1G500700_v2.0.a1 Prupe.1G500700_v2.0.a1 Prupe.1G500700_v2.0.a1 Prupe.1G500700_v2.0.a1 Prupe.1G500700_v2.0.a1
pyrus_communis	pycom08g14210 pycom15g31570
rosa_chinensis	RchiOBHm_Chr6g0295521
rosa_laevigata	RLG00000011794 RLG00000026385
rosa_multiflora	Rmu_sc0005000.1_g000014
rosa_roxburghii	Rroxscaffold_7G00172400
rosa_rugosa	Rorug06G0251600
rosa_samantha	Rh6AG364800 Rh6BG373200 Rh6CG379400 Rh6DG365900
rosa_wichuraiana	Rw6G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 216
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	138, 147, 424
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw21I	GWGCWC	1 cut(s)	154
AoxI	GGCC	4 cut(s)	47, 193, 213, 327
ApeKI	GCWGC	4 cut(s)	11, 14, 17, 416
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	233
BaeI	ACNNNNGTAYC	2 cut(s)	308, 341
BalI	TGGCCA	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	4 cut(s)	23, 26, 29, 403
BccI	CCATC	2 cut(s)	185, 338
BceAI	ACGGC	2 cut(s)	39, 92
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BcnI	CCSGG	1 cut(s)	174
BisI	GCNGC	6 cut(s)	12, 15, 18, 42, 216, 417
BlsI	GCNGC	6 cut(s)	13, 16, 19, 43, 217, 418
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	42, 320
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	228, 342
BseNI	ACTGG	2 cut(s)	42, 320
BseXI	GCAGC	4 cut(s)	23, 26, 29, 403
BshFI	GGCC	4 cut(s)	49, 195, 215, 329
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	174, 231
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	49, 195, 215, 329
Bsp1286I	GDGCHC	1 cut(s)	154
BspACI	CCGC	2 cut(s)	41, 216
BspANI	GGCC	4 cut(s)	49, 195, 215, 329
BspCNI	CTCAG	2 cut(s)	229, 343
BsrI	ACTGG	2 cut(s)	42, 320
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	51, 76
BstDEI	CTNAG	2 cut(s)	237, 351
BstF5I	GGATG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 17, 23, 32, 41, 50, 80, 186
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	23, 26, 29, 403
BstV2I	GAAGAC	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	49, 195, 215, 329
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	3 cut(s)	35, 327, 348
Cac8I	GCNNGC	2 cut(s)	51, 76
Cfr13I	GGNCC	1 cut(s)	233
CviJI	RGCY	9 cut(s)	5, 49, 53, 142, 172, 195, 215, 329, 394
CviKI_1	RGCY	9 cut(s)	5, 49, 53, 142, 172, 195, 215, 329, 394
DdeI	CTNAG	2 cut(s)	237, 351
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	194
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	1 cut(s)	226
Fnu4HI	GCNGC	6 cut(s)	12, 15, 18, 42, 216, 417
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	6 cut(s)	12, 15, 18, 42, 216, 417
GluI	GCNGC	6 cut(s)	12, 15, 18, 42, 216, 417
HaeIII	GGCC	4 cut(s)	49, 195, 215, 329
HapII	CCGG	2 cut(s)	174, 231
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	2 cut(s)	174, 231
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	343, 402
Hpy188III	TCNNGA	3 cut(s)	147, 236, 287
Hpy99I	CGWCG	2 cut(s)	25, 254
HpyAV	CCTTC	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 17, 23, 32, 41, 50, 80, 186
HpyF3I	CTNAG	2 cut(s)	237, 351
HpySE526I	ACGT	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	4 cut(s)	23, 26, 29, 403
LweI	GCATC	1 cut(s)	167
MaeII	ACGT	1 cut(s)	252
MboII	GAAGA	8 cut(s)	85, 105, 108, 117, 120, 123, 126, 415
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	1 cut(s)	58
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	5 cut(s)	64, 78, 206, 254, 346
Mox20I	TGGCCA	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	329
Msp20I	TGGCCA	1 cut(s)	329
MspI	CCGG	2 cut(s)	174, 231
MspR9I	CCNGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	8 cut(s)	11, 17, 23, 32, 41, 50, 80, 186
NciI	CCSGG	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	207
PkrI	GCNGC	6 cut(s)	13, 16, 19, 43, 217, 418
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	233
SatI	GCNGC	6 cut(s)	12, 15, 18, 42, 216, 417
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	4 cut(s)	89, 255, 267, 396
SfaNI	GCATC	1 cut(s)	167
SinI	GGWCC	1 cut(s)	233
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	41, 216
SspI	AATATT	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	58
TauI	GCSGC	2 cut(s)	44, 218
TscAI	CASTG	3 cut(s)	42, 327, 355
TseI	GCWGC	4 cut(s)	11, 14, 17, 416
TspRI	CASTG	3 cut(s)	42, 327, 355
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.