Rmu_sc0005000.1_g000014

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005000.1
OG0007979
Physical Location & Seq
Reverse (-)
77212 .. 77699
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005000.1_g000014.1.cds

Sequence Viewer

Length: 408 bp
atggccattgcagcagcgacaatggctctggccagaccgacctgtacggctctgctgacaacaacacacagggccaactgggtcttcactcctttcgctgtttcttattcctcttcttcttcaaaaccttcaagagctctcattctctactccaagcccggctgctgtttgtgcgatggcctcaaagaaaagcttcaggccgcgttcttactctccggccctgattccattcacgatgttgatttacagataagggatattacaagcaatcctgagtgggaaagagcttaccagtatgagatacctgttttggctagagtgctatctgatggcactgaggttagtttcaacttcaatttgtgtaatgcactggttttacatttgggaaagagtaatttacagctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

135

Amino Acids

14.76

Weight (kDa)

6.8

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AciI CCGC 1 cut(s) 201
AcoI YGGCCR 2 cut(s) 3, 30
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 46
AgsI TTSAA 4 cut(s) 123, 132, 349, 355
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 137, 193, 287, 403
AluI AGCT 4 cut(s) 137, 193, 287, 403
Alw21I GWGCWC 1 cut(s) 139
AoxI GGCC 6 cut(s) 3, 30, 72, 178, 198, 217
ApeKI GCWGC 3 cut(s) 11, 14, 162
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 72, 218
AsuC2I CCSGG 1 cut(s) 159
BalI TGGCCA 2 cut(s) 5, 32
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 23, 26, 149
BccI CCATC 2 cut(s) 170, 323
BceAI ACGGC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 159
BfaI CTAG 2 cut(s) 315, 406
BisI GCNGC 4 cut(s) 12, 15, 163, 201
BlsI GCNGC 4 cut(s) 13, 16, 164, 202
Bme1390I CCNGG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 72, 218
BmrFI CCNGG 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 159
Bse1I ACTGG 3 cut(s) 83, 292, 375
Bse3DI GCAATG 1 cut(s) 6
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 2 cut(s) 264, 327
BseNI ACTGG 3 cut(s) 83, 292, 375
BseXI GCAGC 3 cut(s) 23, 26, 149
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 159, 216
BsnI GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
Bsp1286I GDGCHC 1 cut(s) 139
BspACI CCGC 1 cut(s) 201
BspANI GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
BspCNI CTCAG 2 cut(s) 265, 328
BspFNI CGCG 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 3 cut(s) 83, 292, 375
Bst6I CTCTTC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 273, 336
BstFNI CGCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 3 cut(s) 11, 23, 171
BstSCI CCNGG 1 cut(s) 157
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 3 cut(s) 23, 26, 149
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
BtgZI GCGATG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 333, 368
Cfr13I GGNCC 2 cut(s) 72, 218
Csp6I GTAC 1 cut(s) 45
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 2 cut(s) 273, 336
EaeI YGGCCR 2 cut(s) 3, 30
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 139
FaiI YATR 1 cut(s) 297
FalI AAGNNNNNCTT 2 cut(s) 177, 209
Fnu4HI GCNGC 4 cut(s) 12, 15, 163, 201
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 4 cut(s) 12, 15, 163, 201
FspBI CTAG 2 cut(s) 315, 406
GluI GCNGC 4 cut(s) 12, 15, 163, 201
HaeIII GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
HapII CCGG 2 cut(s) 159, 216
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 224
HpaII CCGG 2 cut(s) 159, 216
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 132, 233, 272
HpyAV CCTTC 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 11, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 23, 171
HpyF3I CTNAG 2 cut(s) 273, 336
Lsp1109I GCAGC 3 cut(s) 23, 26, 149
MaeI CTAG 2 cut(s) 315, 406
MboII GAAGA 4 cut(s) 76, 105, 108, 111
MhlI GDGCHC 1 cut(s) 139
MlsI TGGCCA 2 cut(s) 5, 32
MluCI AATT 2 cut(s) 355, 394
MluNI TGGCCA 2 cut(s) 5, 32
MnlI CCTC 3 cut(s) 121, 191, 331
Mox20I TGGCCA 2 cut(s) 5, 32
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 2 cut(s) 5, 32
Msp20I TGGCCA 2 cut(s) 5, 32
MspI CCGG 2 cut(s) 159, 216
MspR9I CCNGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 3 cut(s) 11, 23, 171
NciI CCSGG 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 4 cut(s) 13, 16, 164, 202
Psp124BI GAGCTC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 72, 218
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SacI GAGCTC 1 cut(s) 139
SatI GCNGC 4 cut(s) 12, 15, 163, 201
Sau96I GGNCC 2 cut(s) 72, 218
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 139
SetI ASST 8 cut(s) 44, 130, 139, 195, 289, 307, 342, 405
Sse9I AATT 2 cut(s) 355, 394
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 315, 406
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 157
TaqII GACCGA 1 cut(s) 52
TasI AATT 2 cut(s) 355, 394
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 2 cut(s) 340, 375
TseI GCWGC 3 cut(s) 11, 14, 162
TspRI CASTG 2 cut(s) 340, 375
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 315, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.