Rroxscaffold_7G00172400

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007979
Physical Location & Seq
Reverse (-)
12633923 .. 12636849
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172400.1

Sequence Viewer

Length: 426 bp
ATGGCCTTGGCAGCAGCGACAATGGCTCTGGCCAGACCGACCTCGACTGCTCTGCTAACAACAACACACAGGGCCAACTGGGTCTTCACTCCTTTCGCTGTTTCTTATTCCTCTTCTTCTTCTTCTTCTTCAAAACCTTCAAGAGCTCTCATTCTCTACTCCAAGCCCGGCTGCTGTTTGTGCGATGGCCTCAAAGAAAAGCTTCAGGCCGCGTTCTTGCTCTCCGGCCCCGATTCCATTCACGATGTTGATTTACAGATAAGGGATATTACAAGCAATCCTGAGTGGGAAAGAGCTTACCAGTATGAGATACCTGTTTTGGCTAGAGTGCTATCTGATGGCACTGAGGAAACTCTACCTAGATTATCTCCTCGTCTTGGAGTGGAAATGGTTCAGAAGAAAATAGCTGCAGCCTTGAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

141

Amino Acids

15.35

Weight (kDa)

8.49

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 50 - 135 1.8e-20 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 212
AciI CCGC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 3 cut(s) 132, 141, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 146, 202, 296, 407
AluI AGCT 4 cut(s) 146, 202, 296, 407
Alw21I GWGCWC 1 cut(s) 148
AoxI GGCC 6 cut(s) 3, 30, 72, 187, 207, 226
ApeKI GCWGC 5 cut(s) 11, 14, 171, 407, 410
Asp700I GAANNNNTTC 2 cut(s) 201, 390
AspS9I GGNCC 2 cut(s) 72, 227
AsuC2I CCSGG 1 cut(s) 168
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 5 cut(s) 23, 26, 158, 394, 422
BccI CCATC 2 cut(s) 179, 332
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BcnI CCSGG 1 cut(s) 168
BfaI CTAG 2 cut(s) 324, 360
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 6 cut(s) 12, 15, 172, 210, 408, 411
BlsI GCNGC 6 cut(s) 13, 16, 173, 211, 409, 412
Bme1390I CCNGG 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 72, 227
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 83, 301
BseDI CCNNGG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 273, 336
BseNI ACTGG 2 cut(s) 83, 301
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 5 cut(s) 23, 26, 158, 394, 422
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 6 cut(s) 5, 32, 74, 189, 209, 228
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 168, 225
BslI CCNNNNNNNGG 1 cut(s) 377
BsnI GGCC 6 cut(s) 5, 32, 74, 189, 209, 228
Bsp1286I GDGCHC 1 cut(s) 148
BspACI CCGC 1 cut(s) 210
BspANI GGCC 6 cut(s) 5, 32, 74, 189, 209, 228
BspCNI CTCAG 2 cut(s) 274, 337
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 412
BsrI ACTGG 2 cut(s) 83, 301
BssECI CCNNGG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 282, 345
BstFNI CGCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 3 cut(s) 11, 23, 180
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 5 cut(s) 23, 26, 158, 394, 422
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 6 cut(s) 5, 32, 74, 189, 209, 228
BtgZI GCGATG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 72, 227
DdeI CTNAG 2 cut(s) 282, 345
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 6
FaiI YATR 1 cut(s) 306
FalI AAGNNNNNCTT 2 cut(s) 186, 218
Fnu4HI GCNGC 6 cut(s) 12, 15, 172, 210, 408, 411
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 6 cut(s) 12, 15, 172, 210, 408, 411
FspBI CTAG 2 cut(s) 324, 360
GluI GCNGC 6 cut(s) 12, 15, 172, 210, 408, 411
HaeIII GGCC 6 cut(s) 5, 32, 74, 189, 209, 228
HapII CCGG 2 cut(s) 168, 225
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 233
HpaII CCGG 2 cut(s) 168, 225
Hpy188I TCNGA 2 cut(s) 337, 396
Hpy188III TCNNGA 3 cut(s) 141, 242, 281
HpyAV CCTTC 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 23, 180
HpyF3I CTNAG 2 cut(s) 282, 345
Lsp1109I GCAGC 5 cut(s) 23, 26, 158, 394, 422
MaeI CTAG 2 cut(s) 324, 360
MboII GAAGA 8 cut(s) 76, 105, 108, 111, 114, 117, 120, 409
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 5 cut(s) 52, 121, 200, 340, 381
Mox20I TGGCCA 1 cut(s) 32
MroXI GAANNNNTTC 2 cut(s) 201, 390
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 2 cut(s) 168, 225
MspR9I CCNGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 11, 23, 180
NciI CCSGG 1 cut(s) 168
NlaIV GGNNCC 1 cut(s) 229
PdmI GAANNNNTTC 2 cut(s) 201, 390
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 6 cut(s) 13, 16, 173, 211, 409, 412
Psp124BI GAGCTC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 72, 227
PstI CTGCAG 1 cut(s) 412
SacI GAGCTC 1 cut(s) 148
SatI GCNGC 6 cut(s) 12, 15, 172, 210, 408, 411
Sau96I GGNCC 2 cut(s) 72, 227
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 148
SetI ASST 8 cut(s) 44, 139, 148, 204, 298, 316, 361, 409
SfcI CTRYAG 1 cut(s) 408
SsiI CCGC 1 cut(s) 210
SspMI CTAG 2 cut(s) 324, 360
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 52
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 349
TseI GCWGC 5 cut(s) 11, 14, 171, 407, 410
TspRI CASTG 1 cut(s) 349
XmnI GAANNNNTTC 2 cut(s) 201, 390
XspI CTAG 2 cut(s) 324, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.