RLG00000011794

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007979
Physical Location & Seq
Reverse (-)
12713117 .. 12715745
2629 bp
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UTR
Exon/CDS
Intron
RLM00000011794

Sequence Viewer

Length: 417 bp
ATGGCCATTGCAGCAGCGACAATGGCTCTGGCCAGACCGACCTCGACTGCTCTGCTAACAACAACACACAGGGCCAACTGGGTCTTCACTCCTTTCGCTGTTTCTTATTCCTCTTCTTCTTCAAAACCTTCAAGAGCTCTCATTCTCTACTCCAAGCCCGGCTGCTGTTTGTGCCATGGCCTCAAGGAAAAGCTTCAGGCCGCCTTCTTACTCTCCGGCCCCGATTCCATTCACGATGTTGATTTACAGATAAGGGATATTACAAGCAATCCTGAGTGGGAAAGAGCTTACCAGTATGAGATACCTGTTTTGGCTAGAGTGCTATCTGATGGCACTGAGGAAACTCTACCTAGATTATCTCCTCGTCTTGGAGTGGAAATGGTTCAGAAGAAAATAGCTGCAGCCTTGAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

139

Amino Acids

15.11

Weight (kDa)

8.86

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 47 - 132 4e-20 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 201
AcoI YGGCCR 2 cut(s) 3, 30
AcuI CTGAAG 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 3 cut(s) 123, 132, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 137, 193, 287, 398
AluI AGCT 4 cut(s) 137, 193, 287, 398
Alw21I GWGCWC 1 cut(s) 139
AoxI GGCC 6 cut(s) 3, 30, 72, 178, 198, 217
ApeKI GCWGC 5 cut(s) 11, 14, 162, 398, 401
Asp700I GAANNNNTTC 2 cut(s) 192, 381
AspS9I GGNCC 2 cut(s) 72, 218
AsuC2I CCSGG 1 cut(s) 159
BalI TGGCCA 2 cut(s) 5, 32
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 23, 26, 149, 385, 413
BccI CCATC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BcnI CCSGG 1 cut(s) 159
BfaI CTAG 2 cut(s) 315, 351
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
BlsI GCNGC 6 cut(s) 13, 16, 164, 202, 400, 403
Bme1390I CCNGG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 72, 218
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 2 cut(s) 83, 292
Bse3DI GCAATG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 2 cut(s) 264, 327
BseNI ACTGG 2 cut(s) 83, 292
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 5 cut(s) 23, 26, 149, 385, 413
BshFI GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 159, 216
BslI CCNNNNNNNGG 1 cut(s) 368
BsnI GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
Bsp1286I GDGCHC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 1 cut(s) 201
BspANI GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
BspCNI CTCAG 2 cut(s) 265, 328
BspLI GGNNCC 1 cut(s) 220
BspMAI CTGCAG 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 2 cut(s) 83, 292
BssECI CCNNGG 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 273, 336
BstDSI CCRYGG 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 11, 23, 171
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 5 cut(s) 23, 26, 149, 385, 413
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
BtgI CCRYGG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 72, 218
CviAII CATG 1 cut(s) 176
DdeI CTNAG 2 cut(s) 273, 336
EaeI YGGCCR 2 cut(s) 3, 30
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 179
FaiI YATR 2 cut(s) 177, 297
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
FspBI CTAG 2 cut(s) 315, 351
GluI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
HaeIII GGCC 6 cut(s) 5, 32, 74, 180, 200, 219
HapII CCGG 2 cut(s) 159, 216
Hin1II CATG 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 224
HpaII CCGG 2 cut(s) 159, 216
Hpy188I TCNGA 2 cut(s) 328, 387
Hpy188III TCNNGA 3 cut(s) 132, 233, 272
HpyAV CCTTC 2 cut(s) 138, 214
HpyCH4V TGCA 2 cut(s) 11, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 23, 171
HpyF3I CTNAG 2 cut(s) 273, 336
Hsp92II CATG 1 cut(s) 179
Lsp1109I GCAGC 5 cut(s) 23, 26, 149, 385, 413
MaeI CTAG 2 cut(s) 315, 351
MboII GAAGA 5 cut(s) 76, 105, 108, 111, 400
MhlI GDGCHC 1 cut(s) 139
MlsI TGGCCA 2 cut(s) 5, 32
MluNI TGGCCA 2 cut(s) 5, 32
MnlI CCTC 5 cut(s) 52, 121, 191, 331, 372
Mox20I TGGCCA 2 cut(s) 5, 32
MroXI GAANNNNTTC 2 cut(s) 192, 381
MscI TGGCCA 2 cut(s) 5, 32
Msp20I TGGCCA 2 cut(s) 5, 32
MspI CCGG 2 cut(s) 159, 216
MspR9I CCNGG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 11, 23, 171
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 175
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 220
PdmI GAANNNNTTC 2 cut(s) 192, 381
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 6 cut(s) 13, 16, 164, 202, 400, 403
Psp124BI GAGCTC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 72, 218
PstI CTGCAG 1 cut(s) 403
SacI GAGCTC 1 cut(s) 139
SatI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
Sau96I GGNCC 2 cut(s) 72, 218
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 139
SetI ASST 8 cut(s) 44, 130, 139, 195, 289, 307, 352, 400
SfcI CTRYAG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 315, 351
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 52
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 1 cut(s) 340
TseI GCWGC 5 cut(s) 11, 14, 162, 398, 401
TspRI CASTG 1 cut(s) 340
XmnI GAANNNNTTC 2 cut(s) 192, 381
XspI CTAG 2 cut(s) 315, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.