Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007979

Physical Location & Seq

Genomic Coordinates Reverse (-)

41445578 .. 41448662

Gene Structure 3085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G500700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCATTGCCGCAGCAGCAACAGCGACAGTGACAATGGCGCTGGCGAGGCCAACGTCGAATGTGTTGCTGACAAGACACAGGGCTAGGTGGGTCTTCACTCCATTTGCTGTTTCTTCTTCCTTTACTTCGTCTTCTTCTTCTTCAAAGCCTTCAAGAGCCCTCATTCTCTACTCCAAGCCCGGGTGCTGTTTGTGCGATGGCCTCAAAGAAAAACTTCAGGCTGCCTTCTTACTCGCTGGCCCTGATTCTCTTCAGGACGTTGATTTACAGATAAGGGATATTACGGGCAATCCAGAGTGGGAAAGAGCTTACCAGTATGAGATACCAGTGTTGGCCAGAGTGCTTTCTGATGGTACTGAGATGCAGATCCTTTTTACATATCTAGTGGCGCAGATTTTTTGTTTTTTTTGTTTTCGTAATAGCCACGAACAAATTTTCCCAGTCATAAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF836

Protein Analysis

153

Amino Acids

16.86

Weight (kDa)

7.63

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08280 AT4G08280 AT4G08280
fragaria_vesca	FvH4_2g26680 FvH4_2g26680
malus_domestica	MD08G1165800.v1.1
prunus_persica	Prupe.1G500700_v2.0.a1 Prupe.1G500700_v2.0.a1 Prupe.1G500700_v2.0.a1 Prupe.1G500700_v2.0.a1 Prupe.1G500700_v2.0.a1
pyrus_communis	pycom08g14210 pycom15g31570
rosa_chinensis	RchiOBHm_Chr6g0295521
rosa_laevigata	RLG00000011794 RLG00000026385
rosa_multiflora	Rmu_sc0005000.1_g000014
rosa_roxburghii	Rroxscaffold_7G00172400
rosa_rugosa	Rorug06G0251600
rosa_samantha	Rh6AG364800 Rh6BG373200 Rh6CG379400 Rh6DG365900
rosa_wichuraiana	Rw6G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	2 cut(s)	3, 336
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	2 cut(s)	203, 239
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	147, 156
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwI	GGATC	1 cut(s)	364
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	5 cut(s)	3, 50, 202, 241, 336
ApeKI	GCWGC	3 cut(s)	14, 17, 224
ApoI	RAATTY	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	43, 394
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	183, 184
AvaI	CYCGRG	1 cut(s)	182
BaeI	ACNNNNGTAYC	2 cut(s)	317, 350
BalI	TGGCCA	2 cut(s)	5, 338
BanII	GRGCYC	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	88, 126
BbvI	GCAGC	3 cut(s)	26, 29, 211
BccI	CCATC	2 cut(s)	194, 347
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BcnI	CCSGG	2 cut(s)	183, 184
BfaI	CTAG	2 cut(s)	87, 386
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	4 cut(s)	12, 15, 18, 225
BlsI	GCNGC	4 cut(s)	13, 16, 19, 226
Bme1390I	CCNGG	2 cut(s)	183, 184
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	183, 184
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	437
BpiI	GAAGAC	2 cut(s)	88, 126
BpuMI	CCSGG	2 cut(s)	183, 184
BsaBI	GATNNNNATC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	3 cut(s)	316, 329, 443
Bse3DI	GCAATG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	182
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	3 cut(s)	316, 329, 443
BseXI	GCAGC	3 cut(s)	26, 29, 211
BshFI	GGCC	5 cut(s)	5, 52, 204, 243, 338
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	183
BsnI	GGCC	5 cut(s)	5, 52, 204, 243, 338
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	5 cut(s)	5, 52, 204, 243, 338
BspCNI	CTCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	316, 329, 443
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	45, 241
BstDEI	CTNAG	1 cut(s)	360
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 394
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 17, 23, 49, 195
BstSCI	CCNGG	2 cut(s)	181, 182
BstV1I	GCAGC	3 cut(s)	26, 29, 211
BstV2I	GAAGAC	2 cut(s)	88, 126
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	5 cut(s)	5, 52, 204, 243, 338
BtgZI	GCGATG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	36, 336
Cac8I	GCNNGC	2 cut(s)	45, 241
CfoI	GCGC	2 cut(s)	43, 394
Cfr13I	GGNCC	1 cut(s)	242
Cfr9I	CCCGGG	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	357
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	3, 336
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	203, 239
Eco88I	CYCGRG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	163
FaiI	YATR	3 cut(s)	321, 382, 449
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
Fnu4HI	GCNGC	4 cut(s)	12, 15, 18, 225
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	4 cut(s)	12, 15, 18, 225
FspBI	CTAG	2 cut(s)	87, 386
GlaI	GCGC	2 cut(s)	42, 393
GluI	GCNGC	4 cut(s)	12, 15, 18, 225
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	5 cut(s)	5, 52, 204, 243, 338
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	43, 394
Hin6I	GCGC	2 cut(s)	41, 392
HinP1I	GCGC	2 cut(s)	41, 392
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	352, 458
Hpy188III	TCNNGA	3 cut(s)	156, 257, 296
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	162, 238
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	56, 261
HpyCH4V	TGCA	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 17, 23, 49, 195
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	2 cut(s)	56, 261
HspAI	GCGC	2 cut(s)	41, 392
Kzo9I	GATC	1 cut(s)	369
Lsp1109I	GCAGC	3 cut(s)	26, 29, 211
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	2 cut(s)	87, 386
MaeII	ACGT	2 cut(s)	56, 261
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	8 cut(s)	88, 108, 111, 126, 129, 132, 135, 245
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	2 cut(s)	5, 338
MluCI	AATT	1 cut(s)	435
MluNI	TGGCCA	2 cut(s)	5, 338
MnlI	CCTC	3 cut(s)	42, 173, 215
Mox20I	TGGCCA	2 cut(s)	5, 338
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	2 cut(s)	5, 338
Msp20I	TGGCCA	2 cut(s)	5, 338
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	183, 184
MwoI	GCNNNNNNNGC	5 cut(s)	11, 17, 23, 49, 195
NciI	CCSGG	2 cut(s)	183, 184
NdeII	GATC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	13, 16, 19, 226
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	369
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SatI	GCNGC	4 cut(s)	12, 15, 18, 225
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	183, 184
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	4 cut(s)	59, 92, 264, 313
SfaNI	GCATC	1 cut(s)	354
SmaI	CCCGGG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	2 cut(s)	87, 386
StyD4I	CCNGG	2 cut(s)	181, 182
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	2 cut(s)	59, 264
TaqI	TCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	435
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	248
TscAI	CASTG	2 cut(s)	36, 336
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	14, 17, 224
Tsp45I	GTSAC	1 cut(s)	31
TspMI	CCCGGG	1 cut(s)	182
TspRI	CASTG	2 cut(s)	36, 336
XapI	RAATTY	1 cut(s)	435
XmaI	CCCGGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	87, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.