Rh6DG365900

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007979
Physical Location & Seq
Forward (+)
56269109 .. 56271782
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG365900.1

Sequence Viewer

Length: 423 bp
ATGGCCATTGCAGCAGCGACAATGGCTCTGGCCAGAGCGACCTCGACTGCTCAGTCTGCTCTGCTAACAACAACAACACACAGGGCCAACTGGGTCTTCACTCCTTTCGCTGTTTCTTATTCTTCTTCAAAACCTTCAAGAGCTCTCATTCTCTACTCCAAGCCGGGCTGCTGTTTGTGCGATGGCCTCAAAGAAAAGCTTCAGGCCGCCTTCTTACTCTCCGGCCCTGATTCCATTCACGATGTGGATTTACAGATAAGGGATATTACAAGCAATCCTGAGTGGGAAAGAGCTTACCAGTATGAGATACCTGTTTTGGCTAGAGTGCTATCTGATGGCACTGAGGAAACTCTACCTAGATTATCTCCTCGTCTTGGAGTGGAAATGGTTCAGAAGAAAATAGCTGCAGCCTTGAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

140

Amino Acids

15.28

Weight (kDa)

8.49

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 49 - 134 1.8e-20 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AciI CCGC 1 cut(s) 207
AcoI YGGCCR 2 cut(s) 3, 30
AcuI CTGAAG 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 3 cut(s) 129, 138, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 4 cut(s) 143, 199, 293, 404
AluI AGCT 4 cut(s) 143, 199, 293, 404
Alw21I GWGCWC 1 cut(s) 145
AoxI GGCC 6 cut(s) 3, 30, 84, 184, 204, 223
ApeKI GCWGC 5 cut(s) 11, 14, 168, 404, 407
Asp700I GAANNNNTTC 2 cut(s) 198, 387
AspS9I GGNCC 2 cut(s) 84, 224
AsuC2I CCSGG 1 cut(s) 165
BalI TGGCCA 2 cut(s) 5, 32
BanII GRGCYC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 5 cut(s) 23, 26, 155, 391, 419
BccI CCATC 2 cut(s) 176, 329
BcnI CCSGG 1 cut(s) 165
BfaI CTAG 2 cut(s) 321, 357
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 6 cut(s) 12, 15, 169, 207, 405, 408
BlsI GCNGC 6 cut(s) 13, 16, 170, 208, 406, 409
Bme1390I CCNGG 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 84, 224
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 95, 298
Bse3DI GCAATG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 3 cut(s) 65, 270, 333
BseNI ACTGG 2 cut(s) 95, 298
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 5 cut(s) 23, 26, 155, 391, 419
BshFI GGCC 6 cut(s) 5, 32, 86, 186, 206, 225
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 164, 222
BslI CCNNNNNNNGG 1 cut(s) 374
BsnI GGCC 6 cut(s) 5, 32, 86, 186, 206, 225
Bsp1286I GDGCHC 1 cut(s) 145
BspACI CCGC 1 cut(s) 207
BspANI GGCC 6 cut(s) 5, 32, 86, 186, 206, 225
BspCNI CTCAG 3 cut(s) 64, 271, 334
BspMAI CTGCAG 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 2 cut(s) 95, 298
BstDEI CTNAG 3 cut(s) 51, 279, 342
BstMWI GCNNNNNNNGC 4 cut(s) 11, 23, 56, 177
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 5 cut(s) 23, 26, 155, 391, 419
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 6 cut(s) 5, 32, 86, 186, 206, 225
BtgZI GCGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 84, 224
DdeI CTNAG 3 cut(s) 51, 279, 342
DraIII CACNNNGTG 1 cut(s) 244
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 2 cut(s) 3, 30
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 145
FaiI YATR 1 cut(s) 303
FalI AAGNNNNNCTT 2 cut(s) 183, 215
Fnu4HI GCNGC 6 cut(s) 12, 15, 169, 207, 405, 408
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 6 cut(s) 12, 15, 169, 207, 405, 408
FspBI CTAG 2 cut(s) 321, 357
GluI GCNGC 6 cut(s) 12, 15, 169, 207, 405, 408
HaeIII GGCC 6 cut(s) 5, 32, 86, 186, 206, 225
HapII CCGG 2 cut(s) 164, 222
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 230
HpaII CCGG 2 cut(s) 164, 222
Hpy188I TCNGA 2 cut(s) 334, 393
Hpy188III TCNNGA 3 cut(s) 138, 239, 278
HpyAV CCTTC 2 cut(s) 144, 220
HpyCH4V TGCA 2 cut(s) 11, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 23, 56, 177
HpyF3I CTNAG 3 cut(s) 51, 279, 342
Lsp1109I GCAGC 5 cut(s) 23, 26, 155, 391, 419
MaeI CTAG 2 cut(s) 321, 357
MboII GAAGA 4 cut(s) 88, 114, 117, 406
MhlI GDGCHC 1 cut(s) 145
MlsI TGGCCA 2 cut(s) 5, 32
MluNI TGGCCA 2 cut(s) 5, 32
MnlI CCTC 4 cut(s) 52, 197, 337, 378
Mox20I TGGCCA 2 cut(s) 5, 32
MroXI GAANNNNTTC 2 cut(s) 198, 387
MscI TGGCCA 2 cut(s) 5, 32
Msp20I TGGCCA 2 cut(s) 5, 32
MspI CCGG 2 cut(s) 164, 222
MspR9I CCNGG 1 cut(s) 165
MwoI GCNNNNNNNGC 4 cut(s) 11, 23, 56, 177
NciI CCSGG 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 198, 387
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 6 cut(s) 13, 16, 170, 208, 406, 409
Psp124BI GAGCTC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 84, 224
PstI CTGCAG 1 cut(s) 409
SacI GAGCTC 1 cut(s) 145
SatI GCNGC 6 cut(s) 12, 15, 169, 207, 405, 408
Sau96I GGNCC 2 cut(s) 84, 224
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 145
SetI ASST 8 cut(s) 44, 136, 145, 201, 295, 313, 358, 406
SfcI CTRYAG 1 cut(s) 405
SsiI CCGC 1 cut(s) 207
SspMI CTAG 2 cut(s) 321, 357
SstI GAGCTC 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 163
TaqI TCGA 1 cut(s) 44
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 1 cut(s) 346
TseI GCWGC 5 cut(s) 11, 14, 168, 404, 407
TspRI CASTG 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmnI GAANNNNTTC 2 cut(s) 198, 387
XspI CTAG 2 cut(s) 321, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.