MD08G1165800.v1.1

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0007979
Physical Location & Seq
Reverse (-)
19689980 .. 19693048
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1165800.v1.1.491

Sequence Viewer

Length: 432 bp
ATGGCTATTGCAGCAGCAGCGACGGCGACAATGGCACTGGCGGCAAGGCCAGCCTCGAATTTGTTGCTAACAACACGCAGGGCGAGGTGGGTCTTCACCCCTTTTGCCGTTTCTTCTTCTTTCTCTTCTTCTTCTTCAAAGCCTTCAAGAGCACTCATTCTCTACTCCAAGCCCGGATGCTGTTTGTGCGATGGCCTCAAAGAAAAACTTCAGGCCGCTTTCTTACTTTCCGGTCCTGATTCCCTCCATGACGTTGATTTGCAGGTAAGGGATATTACAAGCAATCCAGAGTGGGAAAGAGCTTATCAGTTTGAGATACCAGTGTTGGCCAGAGTGCTATCTGATGGCACTGAGGAAACTCTACCCAGATTATCTCCCCGTCTTGGAGTGGAGCTTGTTCAGAAGAAAATATCTGCTGCCTTGAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

144

Amino Acids

15.51

Weight (kDa)

9.18

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 52 - 137 2.2e-20 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AciI CCGC 2 cut(s) 41, 216
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 138, 147, 424
AluBI AGCT 2 cut(s) 302, 394
AluI AGCT 2 cut(s) 302, 394
Alw21I GWGCWC 1 cut(s) 154
AoxI GGCC 4 cut(s) 47, 193, 213, 327
ApeKI GCWGC 4 cut(s) 11, 14, 17, 416
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 308, 341
BalI TGGCCA 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 4 cut(s) 23, 26, 29, 403
BccI CCATC 2 cut(s) 185, 338
BceAI ACGGC 2 cut(s) 39, 92
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BcnI CCSGG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 253
BisI GCNGC 6 cut(s) 12, 15, 18, 42, 216, 417
BlsI GCNGC 6 cut(s) 13, 16, 19, 43, 217, 418
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 2 cut(s) 42, 320
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 2 cut(s) 42, 320
BseXI GCAGC 4 cut(s) 23, 26, 29, 403
BshFI GGCC 4 cut(s) 49, 195, 215, 329
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 174, 231
BslI CCNNNNNNNGG 1 cut(s) 383
BsnI GGCC 4 cut(s) 49, 195, 215, 329
Bsp1286I GDGCHC 1 cut(s) 154
BspACI CCGC 2 cut(s) 41, 216
BspANI GGCC 4 cut(s) 49, 195, 215, 329
BspCNI CTCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 253
BsrI ACTGG 2 cut(s) 42, 320
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 182
BstMWI GCNNNNNNNGC 7 cut(s) 11, 17, 23, 32, 41, 50, 186
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 4 cut(s) 23, 26, 29, 403
BstV2I GAAGAC 1 cut(s) 85
BsuRI GGCC 4 cut(s) 49, 195, 215, 329
BtgZI GCGATG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 3 cut(s) 35, 327, 348
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 1 cut(s) 248
DdeI CTNAG 1 cut(s) 351
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 194
FaeI CATG 1 cut(s) 251
FaiI YATR 1 cut(s) 249
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 6 cut(s) 12, 15, 18, 42, 216, 417
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 6 cut(s) 12, 15, 18, 42, 216, 417
GluI GCNGC 6 cut(s) 12, 15, 18, 42, 216, 417
HaeIII GGCC 4 cut(s) 49, 195, 215, 329
HapII CCGG 2 cut(s) 174, 231
Hin1II CATG 1 cut(s) 251
HinfI GANTC 1 cut(s) 239
HpaII CCGG 2 cut(s) 174, 231
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 343, 402
Hpy188III TCNNGA 3 cut(s) 147, 236, 287
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 153
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 11, 262
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 17, 23, 32, 41, 50, 186
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 1 cut(s) 251
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 4 cut(s) 23, 26, 29, 403
LweI GCATC 1 cut(s) 167
MaeII ACGT 1 cut(s) 252
MboII GAAGA 8 cut(s) 85, 105, 108, 117, 120, 123, 126, 415
MhlI GDGCHC 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 1 cut(s) 58
MluNI TGGCCA 1 cut(s) 329
MnlI CCTC 5 cut(s) 64, 78, 206, 254, 346
Mox20I TGGCCA 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 329
MspI CCGG 2 cut(s) 174, 231
MspR9I CCNGG 1 cut(s) 174
MwoI GCNNNNNNNGC 7 cut(s) 11, 17, 23, 32, 41, 50, 186
NciI CCSGG 1 cut(s) 174
NlaIII CATG 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 6 cut(s) 13, 16, 19, 43, 217, 418
PspPI GGNCC 1 cut(s) 233
SatI GCNGC 6 cut(s) 12, 15, 18, 42, 216, 417
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 89, 255, 267, 304, 396
SfaNI GCATC 1 cut(s) 167
SinI GGWCC 1 cut(s) 233
Sse9I AATT 1 cut(s) 58
SsiI CCGC 2 cut(s) 41, 216
StyD4I CCNGG 1 cut(s) 172
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 58
TauI GCSGC 2 cut(s) 44, 218
TfiI GAWTC 1 cut(s) 239
TscAI CASTG 3 cut(s) 42, 327, 355
TseI GCWGC 4 cut(s) 11, 14, 17, 416
TspRI CASTG 3 cut(s) 42, 327, 355
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.