Rw6G031860

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007979
Physical Location & Seq
Forward (+)
55959705 .. 55962655
2951 bp
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UTR
Exon/CDS
Intron
Rw6G031860.1

Sequence Viewer

Length: 396 bp
ATGGCTCTGGCCAGACCGACCTGTACGGCTCTGCTGACAACAACACACAGGGCCAACTGGGTCTTGACTCCTTTCGCTGTTTCTTATTCCTCTTCTTCTTCAAAACCTTCAAGAGCTCTCATTCTCTACTCCAAGCCCGGCTGCTGTTTGTGCGATGGCCTCAAAGAAAAGCTTCAGGCCGCGTTCTTACTCTCCGGCCCTGATTCCATTCACGATGTTGATTTACAGATAAGGGATATTACAAGCAATCCTGAGTGGGAAAGAGCTTACCAGTATGAGATACCTGTTTTGGCTAGAGTGCTATCTGATGGCACTGAGGAAACTCTACCTAGATTATCTCCTCGTCTTGGAGTGGAAATGGTTCAGAAGAAAATAGCTGCAGCCTTGAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

131

Amino Acids

14.44

Weight (kDa)

8.39

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 40 - 125 1.4e-20 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 3 cut(s) 102, 111, 388
AluBI AGCT 4 cut(s) 116, 172, 266, 377
AluI AGCT 4 cut(s) 116, 172, 266, 377
Alw21I GWGCWC 1 cut(s) 118
AoxI GGCC 5 cut(s) 9, 51, 157, 177, 196
ApeKI GCWGC 3 cut(s) 141, 377, 380
Asp700I GAANNNNTTC 2 cut(s) 171, 360
AspS9I GGNCC 2 cut(s) 51, 197
AsuC2I CCSGG 1 cut(s) 138
BalI TGGCCA 1 cut(s) 11
BanII GRGCYC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 128, 364, 392
BccI CCATC 2 cut(s) 149, 302
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 138
BfaI CTAG 2 cut(s) 294, 330
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 4 cut(s) 142, 180, 378, 381
BlsI GCNGC 4 cut(s) 143, 181, 379, 382
Bme1390I CCNGG 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 51, 197
BmrFI CCNGG 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 62, 271
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 243, 306
BseNI ACTGG 2 cut(s) 62, 271
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 3 cut(s) 128, 364, 392
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 5 cut(s) 11, 53, 159, 179, 198
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 2 cut(s) 138, 195
BslI CCNNNNNNNGG 1 cut(s) 347
BsnI GGCC 5 cut(s) 11, 53, 159, 179, 198
Bsp1286I GDGCHC 1 cut(s) 118
BspACI CCGC 1 cut(s) 180
BspANI GGCC 5 cut(s) 11, 53, 159, 179, 198
BspCNI CTCAG 2 cut(s) 244, 307
BspFNI CGCG 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 382
BsrI ACTGG 2 cut(s) 62, 271
Bst6I CTCTTC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 252, 315
BstFNI CGCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 378
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 128, 364, 392
BsuRI GGCC 5 cut(s) 11, 53, 159, 179, 198
BtgZI GCGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 51, 197
Csp6I GTAC 1 cut(s) 24
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 252, 315
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 118
FaiI YATR 1 cut(s) 276
FalI AAGNNNNNCTT 2 cut(s) 156, 188
Fnu4HI GCNGC 4 cut(s) 142, 180, 378, 381
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 142, 180, 378, 381
FspBI CTAG 2 cut(s) 294, 330
GluI GCNGC 4 cut(s) 142, 180, 378, 381
HaeIII GGCC 5 cut(s) 11, 53, 159, 179, 198
HapII CCGG 2 cut(s) 138, 195
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 67, 203
HpaII CCGG 2 cut(s) 138, 195
Hpy188I TCNGA 2 cut(s) 307, 366
Hpy188III TCNNGA 4 cut(s) 64, 111, 212, 251
HpyAV CCTTC 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 2 cut(s) 252, 315
Lsp1109I GCAGC 3 cut(s) 128, 364, 392
MaeI CTAG 2 cut(s) 294, 330
MboII GAAGA 4 cut(s) 84, 87, 90, 379
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 4 cut(s) 100, 170, 310, 351
Mox20I TGGCCA 1 cut(s) 11
MroXI GAANNNNTTC 2 cut(s) 171, 360
MscI TGGCCA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 11
MspI CCGG 2 cut(s) 138, 195
MspR9I CCNGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 150
NciI CCSGG 1 cut(s) 138
PdmI GAANNNNTTC 2 cut(s) 171, 360
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 4 cut(s) 143, 181, 379, 382
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 51, 197
PstI CTGCAG 1 cut(s) 382
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SacI GAGCTC 1 cut(s) 118
SatI GCNGC 4 cut(s) 142, 180, 378, 381
Sau96I GGNCC 2 cut(s) 51, 197
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 118
SetI ASST 8 cut(s) 23, 109, 118, 174, 268, 286, 331, 379
SfcI CTRYAG 1 cut(s) 378
SsiI CCGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 294, 330
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 136
TaqII GACCGA 1 cut(s) 31
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 1 cut(s) 319
TseI GCWGC 3 cut(s) 141, 377, 380
TspRI CASTG 1 cut(s) 319
XmnI GAANNNNTTC 2 cut(s) 171, 360
XspI CTAG 2 cut(s) 294, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.