FvH4_2g26680

Belongs to the glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007979
Physical Location & Seq
Forward (+)
21378262 .. 21383019
4758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26680.t1

Sequence Viewer

Length: 417 bp
ATGGCCATTGCAGCAGCTACAATAGCTCTGGCCAGACCAACCTCGACGGCTTTGCTAACAACAACACACAGGGCCAACTGGGTCTTCACTCCTTTTGCTCTGTCTCATTCTTCTTCTTCTTCAAAATCTTCAAGAGCTCTCATCCTCTACTCCAAGCCCGGCTGCTGTTTATGCGATGGCCTCAAAGAGAAGCTTCAGGCCGCTTTATTGCTTTCCGGACCTGATTCCATTCACGACGTTGATTTACAGATAAGGGATATTACAGCCAACCCTGAGTGGGAGAAAGCGTACCAGTATGAGATACCTGTTTTGGCTAGAGTGCTATCTGATGGCACTGAGGAGACTCTACCTAGATTATCTCCTCGTCTTGGAGTGGAAATGGTTCAGAAGAAAATAGCTGCAGCCTTGAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF836

Protein Analysis

139

Amino Acids

14.97

Weight (kDa)

8.49

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glrx-like PF05768 47 - 132 2.7e-20 Glutaredoxin-like domain (DUF836)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 1 cut(s) 201
AcoI YGGCCR 2 cut(s) 3, 30
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 277, 368
AgsI TTSAA 3 cut(s) 123, 132, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 17, 26, 137, 193, 398
AluI AGCT 5 cut(s) 17, 26, 137, 193, 398
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 108, 335
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 5 cut(s) 3, 30, 72, 178, 198
ApeKI GCWGC 5 cut(s) 11, 14, 162, 398, 401
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 72, 218
AsuC2I CCSGG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 218
BalI TGGCCA 2 cut(s) 5, 32
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 23, 26, 149, 385, 413
BccI CCATC 2 cut(s) 170, 323
BceAI ACGGC 1 cut(s) 63
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 108, 335
BfaI CTAG 3 cut(s) 315, 351, 415
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
BlsI GCNGC 6 cut(s) 13, 16, 164, 202, 400, 403
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 72, 218
BmrFI CCNGG 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 368
Bse1I ACTGG 2 cut(s) 83, 292
Bse3DI GCAATG 1 cut(s) 6
BseAI TCCGGA 1 cut(s) 215
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 277, 368
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 2 cut(s) 264, 327
BseNI ACTGG 2 cut(s) 83, 292
BseRI GAGGAG 2 cut(s) 351, 353
BseXI GCAGC 5 cut(s) 23, 26, 149, 385, 413
BshFI GGCC 5 cut(s) 5, 32, 74, 180, 200
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 159, 216
BslI CCNNNNNNNGG 2 cut(s) 277, 368
BsmAI GTCTC 2 cut(s) 108, 335
BsnI GGCC 5 cut(s) 5, 32, 74, 180, 200
Bsp1286I GDGCHC 1 cut(s) 139
Bsp13I TCCGGA 1 cut(s) 215
BspACI CCGC 1 cut(s) 201
BspANI GGCC 5 cut(s) 5, 32, 74, 180, 200
BspCNI CTCAG 2 cut(s) 265, 328
BspEI TCCGGA 1 cut(s) 215
BspMAI CTGCAG 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 2 cut(s) 83, 292
BstDEI CTNAG 2 cut(s) 273, 336
BstF5I GGATG 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 108, 335
BstMWI GCNNNNNNNGC 3 cut(s) 11, 23, 171
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 5 cut(s) 23, 26, 149, 385, 413
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 5 cut(s) 5, 32, 74, 180, 200
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 72, 218
Csp6I GTAC 1 cut(s) 289
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 273, 336
EaeI YGGCCR 2 cut(s) 3, 30
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 139
FaiI YATR 2 cut(s) 172, 297
FalI AAGNNNNNCTT 2 cut(s) 177, 209
Fnu4HI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
FspBI CTAG 3 cut(s) 315, 351, 415
GluI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
HaeIII GGCC 5 cut(s) 5, 32, 74, 180, 200
HapII CCGG 2 cut(s) 159, 216
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 2 cut(s) 224, 343
HpaII CCGG 2 cut(s) 159, 216
Hpy188I TCNGA 2 cut(s) 328, 387
Hpy188III TCNNGA 3 cut(s) 132, 216, 233
Hpy99I CGWCG 2 cut(s) 49, 239
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 11, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 23, 171
HpyF3I CTNAG 2 cut(s) 273, 336
HpySE526I ACGT 1 cut(s) 237
Kpn2I TCCGGA 1 cut(s) 215
Lsp1109I GCAGC 5 cut(s) 23, 26, 149, 385, 413
MaeI CTAG 3 cut(s) 315, 351, 415
MaeII ACGT 1 cut(s) 237
MboII GAAGA 7 cut(s) 76, 102, 105, 108, 111, 120, 400
MhlI GDGCHC 1 cut(s) 139
MlsI TGGCCA 2 cut(s) 5, 32
MluNI TGGCCA 2 cut(s) 5, 32
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 5 cut(s) 52, 155, 191, 331, 372
Mox20I TGGCCA 2 cut(s) 5, 32
MroI TCCGGA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 2 cut(s) 5, 32
Msp20I TGGCCA 2 cut(s) 5, 32
MspI CCGG 2 cut(s) 159, 216
MspR9I CCNGG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 11, 23, 171
NciI CCSGG 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 6 cut(s) 13, 16, 164, 202, 400, 403
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 72, 218
PstI CTGCAG 1 cut(s) 403
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SacI GAGCTC 1 cut(s) 139
SatI GCNGC 6 cut(s) 12, 15, 163, 201, 399, 402
Sau96I GGNCC 2 cut(s) 72, 218
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 218
SsiI CCGC 1 cut(s) 201
SspMI CTAG 3 cut(s) 315, 351, 415
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 157
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 44
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 1 cut(s) 340
TseI GCWGC 5 cut(s) 11, 14, 162, 398, 401
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 3 cut(s) 315, 351, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.