Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004711

Physical Location & Seq

Genomic Coordinates Forward (+)

5746271 .. 5748509

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAACCTCCAAAGGAACAACAAAACACGCCGGAGAAATCAATCTCCGATGCTCCAGCCACCATATCCTCCGCCTTTCCTCCTTCCGGATGCTGCACAAACTGCGGCGGACCAACGATTTCAGAAGCACCACCACCACTAGCTTCATTCCCAGAGATGTCACCACCACCAAACTATCGTCCGATCCGAGCTCCAGCAATCAATCTCCCACACAACTCTCAAGCAATAATCCTCTCTCCCGTTCCTCACGCCGAACAAGTCCCCGTCGTATCTCCGCCCTATCATTTCCAATCTCCCGTCAAACGAATCCACTCTCCCGACGATATCCGCCGATTTCACGAATCCGCTTCTTGTAAGAACTTCTTAGGATTCGTAGTATCTCTCTCAGAATCGATCCGTGGATTTAAGATCTCAGATCCTTGTCATATCTCACCAACCGTCGCCGCCATAGTTTCAATCCTTGAAACATTGTTACAATGGATCGATGAGATTCCTCCTGCTCAACAATCAGCTCGATACGGTAACGTTTCGTTTAGGTCATGGCATGAACGGCTCCGTGAGAGAGGTGAATCGCTTATACTTGAGTTTCTTCCTGAGGAATTTAAAGAATCTGTGATTGAGATTGTTCCTTACTTCTTCGATAGCTTTGGGAACTCAAGTAGGATTGATTACGGAACGGGACACGAAACAAATTTCGCGGCGTGGTTGTATTGTTTAGCTAGGATGGGGATAGTGAAAGAAGAGGATTATCATAGTTTGGTTGCTAGGGTTTTTGTTAAGTATTTGGAGTTGATGAGGAAATTGCAAATGGTTTATTGTTTAGAACCAGCTGGATCTCATGGAGTTTGGGGACTTGATGATTACCATTTCTTGCCTTTCATATTTGGGAGTTCTCAGTTGATTGATCATAAGTATATGAAACCGAAATCGATTCATAACGATGATATTTTGGAGAATTTCTCTAGTGAATACATGTACTTGTCTTGTATTGCATTTGTGAAGAAGGTTAAGAAAGGTTTGTTCGCTGAGCATTCGCCGTTGTTGGATGATATAAGTGGTGTACCGAACTGGAAGAAAGTGAATAGCGGTTTGCTTAAGATGTATAGAGTTGAAGTGCTTGAGAAAGTTCCGATTATGCAGCATTTCCTCTTTGGCTGGCTCATCAAATGGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

392

Amino Acids

44.48

Weight (kDa)

6.02

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPA	PF03095	99 - 390	3.3e-125	Phosphotyrosyl phosphate activator (PTPA) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08960
fragaria_vesca	FvH4_6g23990
malus_domestica	MD08G1227100.v1.1 MD15G1419400.v1.1
prunus_persica	Prupe.1G521000_v2.0.a1 Prupe.1G521000_v2.0.a1
pyrus_communis	pycom08g19810 pycom15g37230
rosa_chinensis	RchiOBHm_Chr1g0321971 RchiOBHm_Chr7g0243401
rosa_laevigata	RLG00000000849 RLG00000030399
rosa_multiflora	Rmu_sc0000427.1_g000001 Rmu_sc0001036.1_g000017 Rmu_sc0007027.1_g000005 Rmu_sc0019965.1_g000001 Rmu_sc0029142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011200 Rroxscaffold_3G00222120 Rroxscaffold_4G00327390
rosa_rugosa	Rorug01G0034800 Rorug07G0319100
rosa_samantha	Rh1AG047600 Rh1BG045500 Rh1DG055900 Rh7AG475200 Rh7BG445100 Rh7CG491400 Rh7DG459700
rosa_wichuraiana	Rw1G004340 Rw7G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	698
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	9 cut(s)	72, 105, 108, 275, 328, 345, 444, 698, 1086
AclI	AACGTT	1 cut(s)	525
AclWI	GGATC	5 cut(s)	178, 388, 410, 488, 841
AcsI	RAATTY	3 cut(s)	599, 691, 955
AfaI	GTAC	2 cut(s)	977, 1062
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflII	CTTAAG	1 cut(s)	1094
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	3 cut(s)	456, 464, 1112
AluBI	AGCT	6 cut(s)	143, 191, 512, 645, 719, 830
AluI	AGCT	6 cut(s)	143, 191, 512, 645, 719, 830
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	5 cut(s)	178, 388, 410, 488, 841
Aor13HI	TCCGGA	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	93, 1138
ApoI	RAATTY	3 cut(s)	599, 691, 955
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	3 cut(s)	153, 423, 578
AvaII	GGWCC	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	80, 1150
BccI	CCATC	1 cut(s)	718
BceAI	ACGGC	2 cut(s)	566, 1021
BclI	TGATCA	1 cut(s)	904
BfaI	CTAG	4 cut(s)	140, 720, 765, 963
BfrI	CTTAAG	1 cut(s)	1094
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	5 cut(s)	94, 106, 444, 699, 1139
BlpI	GCTNAGC	1 cut(s)	1026
BlsI	GCNGC	5 cut(s)	95, 107, 445, 700, 1140
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	6, 554
BmsI	GCATC	2 cut(s)	40, 80
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
BpmI	CTGGAG	2 cut(s)	39, 177
Bpu1102I	GCTNAGC	1 cut(s)	1026
BpuEI	CTTGAG	4 cut(s)	204, 602, 640, 1139
Bsa29I	ATCGAT	3 cut(s)	392, 483, 929
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	1073
Bse21I	CCTNAGG	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	86
BseCI	ATCGAT	3 cut(s)	392, 483, 929
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	3 cut(s)	95, 729, 1051
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	5 cut(s)	399, 426, 585, 908, 1017
BseNI	ACTGG	1 cut(s)	1073
BseXI	GCAGC	2 cut(s)	80, 1150
BsgI	GTGCAG	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	698
BshVI	ATCGAT	3 cut(s)	392, 483, 929
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	32, 87
BslFI	GGGAC	3 cut(s)	245, 693, 864
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmFI	GGGAC	3 cut(s)	245, 693, 864
BsmI	GAATGC	1 cut(s)	1030
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	7 cut(s)	183, 393, 408, 415, 480, 833, 904
Bsp1720I	GCTNAGC	1 cut(s)	1026
BspACI	CCGC	9 cut(s)	72, 105, 108, 275, 328, 345, 444, 698, 1086
BspCNI	CTCAG	5 cut(s)	398, 425, 586, 907, 1018
BspDI	ATCGAT	3 cut(s)	392, 483, 929
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	698
BspLI	GGNNCC	2 cut(s)	6, 554
BspPI	GGATC	5 cut(s)	178, 388, 410, 488, 841
BspTI	CTTAAG	1 cut(s)	1094
BsrI	ACTGG	1 cut(s)	1073
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	7 cut(s)	183, 393, 408, 415, 480, 833, 904
Bst4CI	ACNGT	2 cut(s)	439, 521
Bst6I	CTCTTC	2 cut(s)	735, 1167
BstAFI	CTTAAG	1 cut(s)	1094
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	1157
BstDEI	CTNAG	6 cut(s)	364, 385, 412, 594, 894, 1026
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	95, 729, 1051
BstFNI	CGCG	1 cut(s)	698
BstKTI	GATC	7 cut(s)	186, 396, 411, 418, 483, 836, 907
BstMBI	GATC	7 cut(s)	183, 393, 408, 415, 480, 833, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 550
BstNSI	RCATGY	1 cut(s)	976
BstUI	CGCG	1 cut(s)	698
BstV1I	GCAGC	2 cut(s)	80, 1150
BstX2I	RGATCY	3 cut(s)	408, 415, 833
BstYI	RGATCY	3 cut(s)	408, 415, 833
Bsu15I	ATCGAT	3 cut(s)	392, 483, 929
Bsu36I	CCTNAGG	1 cut(s)	594
BsuTUI	ATCGAT	3 cut(s)	392, 483, 929
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	95, 729, 1051
Cac8I	GCNNGC	1 cut(s)	1157
Cfr13I	GGNCC	1 cut(s)	110
ClaI	ATCGAT	3 cut(s)	392, 483, 929
Csp6I	GTAC	2 cut(s)	976, 1061
CviAII	CATG	4 cut(s)	540, 545, 839, 973
CviQI	GTAC	2 cut(s)	976, 1061
DdeI	CTNAG	6 cut(s)	364, 385, 412, 594, 894, 1026
DpnI	GATC	7 cut(s)	185, 395, 410, 417, 482, 835, 906
DpnII	GATC	7 cut(s)	183, 393, 408, 415, 480, 833, 904
DraI	TTTAAA	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	735, 1167
EarI	CTCTTC	2 cut(s)	735, 1167
EciI	GGCGGA	4 cut(s)	61, 123, 264, 317
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	4 cut(s)	543, 548, 842, 976
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	3 cut(s)	245, 693, 864
FatI	CATG	4 cut(s)	539, 544, 838, 972
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	5 cut(s)	94, 106, 444, 699, 1139
FokI	GGATG	3 cut(s)	102, 736, 1058
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	5 cut(s)	94, 106, 444, 699, 1139
FspBI	CTAG	4 cut(s)	140, 720, 765, 963
GluI	GCNGC	5 cut(s)	94, 106, 444, 699, 1139
GsuI	CTGGAG	2 cut(s)	39, 177
HapII	CCGG	2 cut(s)	32, 87
Hin1II	CATG	4 cut(s)	543, 548, 842, 976
HinfI	GANTC	8 cut(s)	306, 341, 369, 389, 490, 569, 608, 931
HpaII	CCGG	2 cut(s)	32, 87
HphI	GGTGA	3 cut(s)	153, 423, 578
Hpy166II	GTNNAC	1 cut(s)	1061
Hpy188I	TCNGA	7 cut(s)	49, 124, 183, 188, 388, 415, 1131
Hpy188III	TCNNGA	4 cut(s)	87, 317, 338, 593
Hpy8I	GTNNAC	1 cut(s)	1061
Hpy99I	CGWCG	3 cut(s)	269, 323, 443
HpyAV	CCTTC	2 cut(s)	93, 997
HpyCH4III	ACNGT	2 cut(s)	439, 521
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	4 cut(s)	96, 805, 992, 1138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 550
HpyF3I	CTNAG	6 cut(s)	364, 385, 412, 594, 894, 1026
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	4 cut(s)	543, 548, 842, 976
Kpn2I	TCCGGA	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	7 cut(s)	183, 393, 408, 415, 480, 833, 904
LmnI	GCTCC	3 cut(s)	58, 196, 558
Lsp1109I	GCAGC	2 cut(s)	80, 1150
LweI	GCATC	2 cut(s)	40, 80
MaeI	CTAG	4 cut(s)	140, 720, 765, 963
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	159, 471, 521
MalI	GATC	7 cut(s)	185, 395, 410, 417, 482, 835, 906
MboI	GATC	7 cut(s)	183, 393, 408, 415, 480, 833, 904
MboII	GAAGA	5 cut(s)	581, 628, 752, 1012, 1084
MflI	RGATCY	3 cut(s)	408, 415, 833
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	4 cut(s)	599, 691, 800, 955
MmeI	TCCRAC	1 cut(s)	1023
MroI	TCCGGA	1 cut(s)	86
MseI	TTAA	5 cut(s)	405, 603, 777, 1008, 1095
MslI	CAYNNNNRTG	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	830
MspCI	CTTAAG	1 cut(s)	1094
MspI	CCGG	2 cut(s)	32, 87
Mva1269I	GAATGC	1 cut(s)	1030
MvnI	CGCG	1 cut(s)	698
MwoI	GCNNNNNNNGC	2 cut(s)	102, 550
NdeII	GATC	7 cut(s)	183, 393, 408, 415, 480, 833, 904
NlaIII	CATG	4 cut(s)	543, 548, 842, 976
NlaIV	GGNNCC	2 cut(s)	6, 554
NmuCI	GTSAC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	976
PciI	ACATGT	1 cut(s)	972
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	1030
PfeI	GAWTC	8 cut(s)	306, 341, 369, 389, 490, 569, 608, 931
PkrI	GCNGC	5 cut(s)	95, 107, 445, 700, 1140
PscI	ACATGT	1 cut(s)	972
Psp124BI	GAGCTC	1 cut(s)	193
Psp1406I	AACGTT	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	6, 554
PspPI	GGNCC	1 cut(s)	110
PsuI	RGATCY	3 cut(s)	408, 415, 833
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	977, 1062
RsaNI	GTAC	2 cut(s)	976, 1061
RseI	CAYNNNNRTG	1 cut(s)	939
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	5 cut(s)	405, 603, 777, 1008, 1095
SatI	GCNGC	5 cut(s)	94, 106, 444, 699, 1139
Sau3AI	GATC	7 cut(s)	183, 393, 408, 415, 480, 833, 904
Sau96I	GGNCC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	2 cut(s)	40, 80
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	939
SmlI	CTYRAG	5 cut(s)	219, 581, 655, 1094, 1118
SmoI	CTYRAG	5 cut(s)	219, 581, 655, 1094, 1118
Sse9I	AATT	4 cut(s)	599, 691, 800, 955
SsiI	CCGC	9 cut(s)	72, 105, 108, 275, 328, 345, 444, 698, 1086
SspMI	CTAG	4 cut(s)	140, 720, 765, 963
SstI	GAGCTC	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	439, 521
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	5 cut(s)	392, 483, 514, 639, 929
TasI	AATT	4 cut(s)	599, 691, 800, 955
TatI	WGTACW	1 cut(s)	975
TauI	GCSGC	3 cut(s)	108, 446, 701
TfiI	GAWTC	8 cut(s)	306, 341, 369, 389, 490, 569, 608, 931
Tru1I	TTAA	5 cut(s)	405, 603, 777, 1008, 1095
Tru9I	TTAA	5 cut(s)	405, 603, 777, 1008, 1095
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	2 cut(s)	93, 1138
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	5 cut(s)	135, 561, 868, 923, 932
TspGWI	ACGGA	3 cut(s)	386, 545, 687
Vha464I	CTTAAG	1 cut(s)	1094
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	3 cut(s)	599, 691, 955
XceI	RCATGY	1 cut(s)	976
XspI	CTAG	4 cut(s)	140, 720, 765, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.