Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029142.1

Orthogroup ID

OG0004711

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1255

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029142.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 977 bp

atgtcacgtgcctgggtttcttcagtaaccgcgacttttattcaggttctccctccaacggaacacttccactcaatctcaccccctttccatttccaaaccccctccaagatcatccaatcccccgacgacctccgccgcttccacgactccgattccggcaaacacttcctcggcttcgtcgtcgccctctccgaatccatccgctccaagaaaatctccgacccctgccaccactcccccgtcaccgccgccatcgtctccattctcgacactctcctccgttggatcgacgaaatccctcccactcagcaagccgcccgatacggcaacgtttcgtaccgcgtctggcacgagcgtttggtcgagaatagctacaacctaatgatgcagttcctcccccaacatctggaagcttccaccgtcgagatcgtcccttatttcacagacagcttcggaaacgcgagccggatcgactacggcaccggccacgagaccaatttcgcggcgtggctttattgcctggcgagaatggaggtcattaaggaagaggattaccctgccgtggtggccagagtgttcgtcaagtacttggagttgatgaggaagctgcagctggtgtattgcttagagccggcggggtctcacggcgtttggggccttgacgactaccatttcctgcccttcattttcggctcttcgcagttgattgatcacaagcatatgaagcccaagtccattcataatgatgatatactggagaatttttcaaatgagtatatgtatctttcggggattgcttttgtgaagaaggtgaagaagggtccgttttcggagcactctcctttgttggatgatatcagtggagtgccgaattggaacaaagtcaataaggggatgctgaagatgtataaggttgaggtgttggagaaggtacccatcatgcagcatttcctatttggctggctcatcaactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

325

Amino Acids

37.39

Weight (kDa)

6.49

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08960
fragaria_vesca	FvH4_6g23990
malus_domestica	MD08G1227100.v1.1 MD15G1419400.v1.1
prunus_persica	Prupe.1G521000_v2.0.a1 Prupe.1G521000_v2.0.a1
pyrus_communis	pycom08g19810 pycom15g37230
rosa_chinensis	RchiOBHm_Chr1g0321971 RchiOBHm_Chr7g0243401
rosa_laevigata	RLG00000000849 RLG00000030399
rosa_multiflora	Rmu_sc0000427.1_g000001 Rmu_sc0001036.1_g000017 Rmu_sc0007027.1_g000005 Rmu_sc0019965.1_g000001 Rmu_sc0029142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011200 Rroxscaffold_3G00222120 Rroxscaffold_4G00327390
rosa_rugosa	Rorug01G0034800 Rorug07G0319100
rosa_samantha	Rh1AG047600 Rh1BG045500 Rh1DG055900 Rh7AG475200 Rh7BG445100 Rh7CG491400 Rh7DG459700
rosa_wichuraiana	Rw1G004340 Rw7G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	934
AccB1I	GGYRCC	2 cut(s)	482, 934
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccBSI	CCGCTC	1 cut(s)	207
AccII	CGCG	4 cut(s)	32, 345, 464, 506
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	2 cut(s)	296, 479
AcoI	YGGCCR	2 cut(s)	487, 570
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	2 cut(s)	6, 923
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	3 cut(s)	341, 590, 936
AfiI	CCNNNNNNNGG	3 cut(s)	58, 409, 565
AgsI	TTSAA	1 cut(s)	771
AjnI	CCWGG	2 cut(s)	11, 522
AluBI	AGCT	5 cut(s)	375, 416, 453, 610, 616
AluI	AGCT	5 cut(s)	375, 416, 453, 610, 616
Alw21I	GWGCWC	1 cut(s)	840
Alw26I	GTCTC	3 cut(s)	265, 488, 648
AlwI	GGATC	2 cut(s)	296, 479
AoxI	GGCC	3 cut(s)	487, 570, 658
ApeKI	GCWGC	3 cut(s)	610, 613, 946
ApoI	RAATTY	1 cut(s)	763
Asp718I	GGTACC	1 cut(s)	934
AspS9I	GGNCC	2 cut(s)	658, 824
AsuHPI	GGTGA	3 cut(s)	72, 238, 826
AvaII	GGWCC	1 cut(s)	824
BalI	TGGCCA	1 cut(s)	572
BanI	GGYRCC	2 cut(s)	482, 934
BauI	CACGAG	2 cut(s)	353, 491
BbrPI	CACGTG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	840
BbvI	GCAGC	3 cut(s)	597, 625, 958
BccI	CCATC	3 cut(s)	209, 263, 947
BceAI	ACGGC	4 cut(s)	343, 496, 548, 664
BciT130I	CCWGG	2 cut(s)	13, 524
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	3 cut(s)	265, 488, 648
BfmI	CTRYAG	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	569
BisI	GCNGC	7 cut(s)	139, 252, 318, 507, 611, 614, 947
BlsI	GCNGC	7 cut(s)	140, 253, 319, 508, 612, 615, 948
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	2 cut(s)	13, 524
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	2 cut(s)	658, 824
BmiI	GGNNCC	4 cut(s)	484, 659, 825, 936
BmrFI	CCNGG	2 cut(s)	13, 524
BmsI	GCATC	2 cut(s)	378, 888
BpmI	CTGGAG	1 cut(s)	779
BsaAI	YACGTR	1 cut(s)	8
BsaI	GGTCTC	2 cut(s)	488, 648
BsaJI	CCNNGG	3 cut(s)	12, 172, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 409, 565
Bse118I	RCCGGY	2 cut(s)	485, 634
Bse1I	ACTGG	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	13, 524
BseDI	CCNNGG	3 cut(s)	12, 172, 564
BseGI	GGATG	4 cut(s)	114, 201, 859, 903
BseLI	CCNNNNNNNGG	3 cut(s)	58, 409, 565
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	762
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	597, 625, 958
Bsh1236I	CGCG	4 cut(s)	32, 345, 464, 506
BshFI	GGCC	3 cut(s)	489, 572, 660
BshNI	GGYRCC	2 cut(s)	482, 934
BsiHKAI	GWGCWC	1 cut(s)	840
BsiSI	CCGG	4 cut(s)	159, 469, 486, 635
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	3 cut(s)	58, 409, 565
BsmAI	GTCTC	3 cut(s)	265, 488, 648
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	489, 572, 660
Bso31I	GGTCTC	2 cut(s)	488, 648
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp143I	GATC	5 cut(s)	111, 288, 429, 471, 712
BspANI	GGCC	3 cut(s)	489, 572, 660
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	4 cut(s)	32, 345, 464, 506
BspLI	GGNNCC	4 cut(s)	484, 659, 825, 936
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	2 cut(s)	296, 479
BspQI	GCTCTTC	1 cut(s)	703
BspT107I	GGYRCC	2 cut(s)	482, 934
BspTNI	GGTCTC	2 cut(s)	488, 648
BsrBI	CCGCTC	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	485, 634
BsrI	ACTGG	1 cut(s)	762
BssAI	RCCGGY	2 cut(s)	485, 634
BssECI	CCNNGG	3 cut(s)	12, 172, 564
BssMI	GATC	5 cut(s)	111, 288, 429, 471, 712
BssSI	CACGAG	2 cut(s)	353, 491
Bst2BI	CACGAG	2 cut(s)	353, 491
Bst2UI	CCWGG	2 cut(s)	13, 524
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	2 cut(s)	543, 703
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	4 cut(s)	315, 466, 636, 965
BstDEI	CTNAG	2 cut(s)	309, 628
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	4 cut(s)	114, 201, 859, 903
BstFNI	CGCG	4 cut(s)	32, 345, 464, 506
BstKTI	GATC	5 cut(s)	114, 291, 432, 474, 715
BstMAI	GTCTC	3 cut(s)	265, 488, 648
BstMBI	GATC	5 cut(s)	111, 288, 429, 471, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 657, 727
BstNI	CCWGG	2 cut(s)	13, 524
BstSCI	CCNGG	2 cut(s)	11, 522
BstSFI	CTRYAG	1 cut(s)	611
BstUI	CGCG	4 cut(s)	32, 345, 464, 506
BstV1I	GCAGC	3 cut(s)	597, 625, 958
BsuRI	GGCC	3 cut(s)	489, 572, 660
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	4 cut(s)	114, 201, 859, 903
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	4 cut(s)	315, 466, 636, 965
Cfr10I	RCCGGY	2 cut(s)	485, 634
Cfr13I	GGNCC	2 cut(s)	658, 824
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	340, 589, 935
CviAII	CATG	1 cut(s)	943
CviQI	GTAC	3 cut(s)	340, 589, 935
DdeI	CTNAG	2 cut(s)	309, 628
DpnI	GATC	5 cut(s)	113, 290, 431, 473, 714
DpnII	GATC	5 cut(s)	111, 288, 429, 471, 712
EaeI	YGGCCR	2 cut(s)	487, 570
Eam1104I	CTCTTC	2 cut(s)	543, 703
EarI	CTCTTC	2 cut(s)	543, 703
EciI	GGCGGA	1 cut(s)	125
Eco31I	GGTCTC	2 cut(s)	488, 648
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	1 cut(s)	824
Eco57I	CTGAAG	2 cut(s)	6, 923
Eco72I	CACGTG	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRII	CCWGG	2 cut(s)	11, 522
EcoRV	GATATC	1 cut(s)	859
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	1 cut(s)	946
FaiI	YATR	8 cut(s)	723, 725, 744, 755, 780, 782, 912, 944
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	1 cut(s)	942
FauI	CCCGC	1 cut(s)	631
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	7 cut(s)	139, 252, 318, 507, 611, 614, 947
FokI	GGATG	4 cut(s)	101, 188, 866, 910
Fsp4HI	GCNGC	7 cut(s)	139, 252, 318, 507, 611, 614, 947
GluI	GCNGC	7 cut(s)	139, 252, 318, 507, 611, 614, 947
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	3 cut(s)	489, 572, 660
HapII	CCGG	4 cut(s)	159, 469, 486, 635
HgaI	GACGC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	946
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	3 cut(s)	149, 155, 197
HpaII	CCGG	4 cut(s)	159, 469, 486, 635
HphI	GGTGA	3 cut(s)	72, 238, 826
Hpy188I	TCNGA	5 cut(s)	154, 196, 223, 458, 835
Hpy188III	TCNNGA	4 cut(s)	269, 367, 410, 427
Hpy99I	CGWCG	5 cut(s)	131, 185, 188, 296, 428
HpyAV	CCTTC	4 cut(s)	694, 805, 814, 925
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	2 cut(s)	7, 333
HpyCH4V	TGCA	3 cut(s)	391, 613, 946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 657, 727
HpyF3I	CTNAG	2 cut(s)	309, 628
HpySE526I	ACGT	2 cut(s)	7, 333
Hsp92II	CATG	1 cut(s)	946
KpnI	GGTACC	1 cut(s)	938
KroI	GCCGGC	1 cut(s)	634
KroNI	GCCGGC	1 cut(s)	636
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	5 cut(s)	111, 288, 429, 471, 712
LguI	GCTCTTC	1 cut(s)	703
LmnI	GCTCC	2 cut(s)	212, 835
Lsp1109I	GCAGC	3 cut(s)	597, 625, 958
LweI	GCATC	2 cut(s)	378, 888
MaeII	ACGT	2 cut(s)	7, 333
MaeIII	GTNAC	3 cut(s)	3, 25, 244
MalI	GATC	5 cut(s)	113, 290, 431, 473, 714
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	5 cut(s)	111, 288, 429, 471, 712
MboII	GAAGA	6 cut(s)	12, 560, 690, 820, 829, 916
MhlI	GDGCHC	1 cut(s)	840
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	3 cut(s)	499, 763, 874
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	5 cut(s)	80, 246, 266, 831, 906
Mox20I	TGGCCA	1 cut(s)	572
MroNI	GCCGGC	1 cut(s)	634
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	747
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	616
MspI	CCGG	4 cut(s)	159, 469, 486, 635
MspR9I	CCNGG	2 cut(s)	13, 524
MvaI	CCWGG	2 cut(s)	13, 524
MvnI	CGCG	4 cut(s)	32, 345, 464, 506
MwoI	GCNNNNNNNGC	3 cut(s)	569, 657, 727
NaeI	GCCGGC	1 cut(s)	636
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	5 cut(s)	111, 288, 429, 471, 712
NgoMIV	GCCGGC	1 cut(s)	634
NlaIII	CATG	1 cut(s)	946
NlaIV	GGNNCC	4 cut(s)	484, 659, 825, 936
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	3, 244
PciSI	GCTCTTC	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 192
PdiI	GCCGGC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	155, 197
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	7 cut(s)	140, 253, 319, 508, 612, 615, 948
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	11, 522
PspCI	CACGTG	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	11, 522
PspN4I	GGNNCC	4 cut(s)	484, 659, 825, 936
PspPI	GGNCC	2 cut(s)	658, 824
PstI	CTGCAG	1 cut(s)	615
PvuII	CAGCTG	1 cut(s)	616
RsaI	GTAC	3 cut(s)	341, 590, 936
RsaNI	GTAC	3 cut(s)	340, 589, 935
RseI	CAYNNNNRTG	1 cut(s)	747
SapI	GCTCTTC	1 cut(s)	703
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	7 cut(s)	139, 252, 318, 507, 611, 614, 947
Sau3AI	GATC	5 cut(s)	111, 288, 429, 471, 712
Sau96I	GGNCC	2 cut(s)	658, 824
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	13, 524
SduI	GDGCHC	1 cut(s)	840
SfaNI	GCATC	2 cut(s)	378, 888
SfcI	CTRYAG	1 cut(s)	611
SinI	GGWCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	747
Sse9I	AATT	3 cut(s)	499, 763, 874
StyD4I	CCNGG	2 cut(s)	11, 522
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	2 cut(s)	10, 336
TaqI	TCGA	5 cut(s)	270, 291, 366, 426, 474
TasI	AATT	3 cut(s)	499, 763, 874
TatI	WGTACW	1 cut(s)	588
TauI	GCSGC	4 cut(s)	141, 254, 320, 509
TfiI	GAWTC	2 cut(s)	155, 197
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	2 cut(s)	3, 244
TseI	GCWGC	3 cut(s)	610, 613, 946
Tsp45I	GTSAC	2 cut(s)	3, 244
TspDTI	ATGAA	3 cut(s)	676, 731, 740
TspGWI	ACGGA	3 cut(s)	74, 272, 816
TspRI	CASTG	1 cut(s)	868
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	824
XapI	RAATTY	1 cut(s)	763
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.