Rroxscaffold_1G00011200

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004711
Physical Location & Seq
Reverse (-)
14203962 .. 14205066
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011200.1

Sequence Viewer

Length: 597 bp
ATGCTTGCTAGTCTCCGACAAATCCTATTCGGCCTCCTCATCGTTTGGTCATGCCAGAAACCAGCTCACGCGCCAATCTCATCATTACCCAGAAATGATCTGGGCACCCATTGTACTATCATGGCCGCACCTCGTCCGCCGCTGTTGTGGCCCTACACCTCCCCACCCCCAAACAACCGCCCTATCCGAAGCCCCGTCATCAATCTCCCTCCAAACCAACAAGCCATAATCCTCACCCCTGTCCCTCAAGCCAGGTCTGTCCCCCTATCTCACCCCCTTCCATTTGCAAACACAATAAACCCAAAATTGACCACAACACAATTACAAAACAGTGAAATAAACCTGAAAAGACTCGAGCTTTGGGATCAAGTCCGAACCTTTAAAGGGCTTGATGACGAACTGCTTCTTGTCGAGCTAAGGCGGTTGGGTCTTTTTGAGGGACAAATTGTCCGGCTGGGTGCGGCGACTGTTGTCATTGTTTTCGGGGTGGGTTTGGTGGTGGAGGTCGTTTTTGGTGTTGGGCTGAGATTGAGACTTGGCCTTTTTCATCAGAGGATGGGATGTGAGAGAAGAAGAAGAAAAGGTGGTGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04931 map04931
Pfam Domains
Protein Families
PTPA

Protein Analysis

198

Amino Acids

21.96

Weight (kDa)

11.18

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccII CGCG 1 cut(s) 71
AciI CCGC 6 cut(s) 126, 137, 140, 178, 421, 461
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 123
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 384
AhdI GACNNNNNGTC 1 cut(s) 446
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 3 cut(s) 65, 358, 415
AluI AGCT 3 cut(s) 65, 358, 415
Alw26I GTCTC 2 cut(s) 17, 526
AlwI GGATC 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 4 cut(s) 31, 123, 149, 538
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 226, 263
AvaI CYCGRG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 104
BccI CCATC 1 cut(s) 550
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 17, 526
BfaI CTAG 1 cut(s) 9
BisI GCNGC 3 cut(s) 126, 140, 462
BlsI GCNGC 3 cut(s) 127, 141, 463
Bme1390I CCNGG 1 cut(s) 253
BmeRI GACNNNNNGTC 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 253
BoxI GACNNNNGTC 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 561, 566
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 4 cut(s) 33, 125, 151, 540
BshNI GGYRCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 1 cut(s) 451
BslFI GGGAC 3 cut(s) 227, 245, 453
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 2 cut(s) 17, 526
BsmFI GGGAC 3 cut(s) 227, 245, 453
BsnI GGCC 4 cut(s) 33, 125, 151, 540
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 97, 364
BspACI CCGC 6 cut(s) 126, 137, 140, 178, 421, 461
BspANI GGCC 4 cut(s) 33, 125, 151, 540
BspCNI CTCAG 1 cut(s) 516
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 104
BssMI GATC 2 cut(s) 97, 364
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 332, 469
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 416, 524
BstF5I GGATG 2 cut(s) 561, 566
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 100, 367
BstMAI GTCTC 2 cut(s) 17, 526
BstMBI GATC 2 cut(s) 97, 364
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 253
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 71
BsuRI GGCC 4 cut(s) 33, 125, 151, 540
BtsCI GGATG 2 cut(s) 561, 566
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 51, 121
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 416, 524
DpnI GATC 2 cut(s) 99, 366
DpnII GATC 2 cut(s) 97, 364
DraI TTTAAA 1 cut(s) 382
DriI GACNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 1 cut(s) 123
Eam1105I GACNNNNNGTC 1 cut(s) 446
EciI GGCGGA 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 251
FaeI CATG 2 cut(s) 54, 124
FaiI YATR 3 cut(s) 52, 122, 227
FaqI GGGAC 3 cut(s) 227, 245, 453
FatI CATG 2 cut(s) 50, 120
Fnu4HI GCNGC 3 cut(s) 126, 140, 462
FokI GGATG 2 cut(s) 568, 573
Fsp4HI GCNGC 3 cut(s) 126, 140, 462
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 72
GluI GCNGC 3 cut(s) 126, 140, 462
GsaI CCCAGC 1 cut(s) 458
HaeIII GGCC 4 cut(s) 33, 125, 151, 540
HapII CCGG 1 cut(s) 451
HhaI GCGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 54, 124
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 351
HpaII CCGG 1 cut(s) 451
HphI GGTGA 2 cut(s) 226, 263
Hpy188I TCNGA 4 cut(s) 17, 188, 374, 552
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 2 cut(s) 332, 469
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 416, 524
Hsp92II CATG 2 cut(s) 54, 124
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 2 cut(s) 97, 364
MaeI CTAG 1 cut(s) 9
MalI GATC 2 cut(s) 99, 366
MboI GATC 2 cut(s) 97, 364
MboII GAAGA 3 cut(s) 582, 585, 588
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 3 cut(s) 305, 320, 444
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 2 cut(s) 97, 364
NlaIII CATG 2 cut(s) 54, 124
NlaIV GGNNCC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 402
PkrI GCNGC 3 cut(s) 127, 141, 463
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PshAI GACNNNNGTC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 454
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 353
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 126, 140, 462
Sau3AI GATC 2 cut(s) 97, 364
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 107
Sfr274I CTCGAG 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 246, 353
SmoI CTYRAG 2 cut(s) 246, 353
Sse9I AATT 3 cut(s) 305, 320, 444
SsiI CCGC 6 cut(s) 126, 137, 140, 178, 421, 461
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 332, 469
TaqI TCGA 2 cut(s) 354, 411
TasI AATT 3 cut(s) 305, 320, 444
TatI WGTACW 1 cut(s) 113
TauI GCSGC 3 cut(s) 128, 142, 464
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 337
TspDTI ATGAA 1 cut(s) 536
TspRI CASTG 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XhoI CTCGAG 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.