MD08G1227100.v1.1

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
29345291 .. 29346373
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1227100.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGGCCGCTCCCCCACCCTCCTTCTCCGACATATCCCCTCCCCCAAACTACCGCCCAATCCGAGCTCCCGCCATCAACCTCCCTCCAAACTCTAACTCCCAACAGGCCATCATCCTCACCCCTGTACCCCAACCCCTCTCTGTCCCCCAAATCTCCCCTCCCTTCCACTTCCAATCCCCCTCCAAAGGCATCCAGTCCCCCGACGACCTCCGCCGCTTCCACGAATCATTCTCCGGCAAACACTTTGTCGGATTCGTCGCCGCCCTCTCTGAGTCCATCCGCGCCAAGAAAATCTCCGACCCCTGTCACCAATCCGACACCGTCAACACCATCATCTCCATTCTAGAGACCCTAATTCAATGGGTCGACGAAATCCCACCCACCCAGCAAGCCGCCCGATACGGCAACGTTTCATTCCGCTCCTGGCACGAGCGATTGTTCGAAACCAGCCACTCCCTCATGCTGCAGTTCCTCCCCGAGCATCTCCACCCTTCTACCATCGAGATCGTTCCGTATTTCACTGATAGCTTCGGGAACCCGAGCCGGATTGATTACGGTACAGGGCACGAGACCAACTTCGCTGCTTGGCTCTACTGCCTGGCGAGAATGGGGGTGATCAAAGAAGAAGATTATCCGGCCGTCGTGGCTCGAGTTTTCGTCAAGTACTTGGACTTGATGAGGAAGCTGCAGTTGGTGTATTGCCTGGAGCCGGCAGGGTCTCACGGTGTTTGGGGTCTCGATGACTACCATTTCCTGCCGTTTATTTTCGGGGCGTCGCAGTTGATCGAGCATAAGTATATGAAGCCTAAGTCAGTTCACAATGATGATATCGTGGAGAATTTTTCGAAAGAATATTTGTATCTCTCGTGCATTCAGTTTGTGAAGAAGGTGAAGAAGGGTCCATTTTCGGAGCACTCGCCATTGTTGGATGATATCAGTGGAGTGCCTAATTGGAACAAAGTGAATAGTGGGTTGCTTAAGATGTATAAGGCTGAGGTGTTGGGGAAGGTTCCGATTATGCAGCATTTTCTGTTTGGCTGGCTCATCAAGTGGTATGATCCTTGCCCCTTTCCCTCTCTGTAA

Protein Analysis

361

Amino Acids

40.92

Weight (kDa)

6.73

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTPA PF03095 60 - 351 1.1e-123 Phosphotyrosyl phosphate activator (PTPA) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 8, 420
AccI GTMKAC 1 cut(s) 366
AccII CGCG 1 cut(s) 282
AciI CCGC 9 cut(s) 6, 52, 69, 211, 214, 261, 280, 393, 418
AclI AACGTT 1 cut(s) 408
AclWI GGATC 1 cut(s) 1052
AcoI YGGCCR 2 cut(s) 3, 636
AcsI RAATTY 1 cut(s) 838
AcyI GRCGYC 1 cut(s) 773
AfaI GTAC 3 cut(s) 126, 559, 665
AfiI CCNNNNNNNGG 2 cut(s) 185, 709
AflII CTTAAG 1 cut(s) 977
AgsI TTSAA 1 cut(s) 359
AjnI CCWGG 3 cut(s) 422, 597, 702
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AluBI AGCT 3 cut(s) 65, 528, 685
AluI AGCT 3 cut(s) 65, 528, 685
Alw21I GWGCWC 2 cut(s) 67, 915
Alw26I GTCTC 4 cut(s) 341, 563, 723, 740
AlwI GGATC 1 cut(s) 1052
Ama87I CYCGRG 3 cut(s) 476, 538, 648
AoxI GGCC 3 cut(s) 3, 105, 636
ApeKI GCWGC 4 cut(s) 463, 581, 685, 1021
ApoI RAATTY 1 cut(s) 838
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 899
AsuHPI GGTGA 4 cut(s) 109, 299, 625, 901
AsuII TTCGAA 2 cut(s) 441, 845
AvaI CYCGRG 3 cut(s) 476, 538, 648
AvaII GGWCC 1 cut(s) 899
BaeGI GKGCMC 1 cut(s) 567
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 3 cut(s) 428, 566, 865
Bbv12I GWGCWC 2 cut(s) 67, 915
BbvCI CCTCAGC 1 cut(s) 993
BbvI GCAGC 4 cut(s) 450, 568, 672, 1033
BccI CCATC 5 cut(s) 80, 116, 284, 338, 506
BceAI ACGGC 3 cut(s) 418, 623, 742
BciT130I CCWGG 3 cut(s) 424, 599, 704
BclI TGATCA 1 cut(s) 615
BcoDI GTCTC 4 cut(s) 341, 563, 723, 740
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 464, 686
BfrI CTTAAG 1 cut(s) 977
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 8 cut(s) 6, 214, 261, 393, 464, 582, 686, 1022
BlsI GCNGC 8 cut(s) 7, 215, 262, 394, 465, 583, 687, 1023
BmcAI AGTACT 1 cut(s) 665
Bme1390I CCNGG 3 cut(s) 424, 599, 704
Bme18I GGWCC 1 cut(s) 899
BmeT110I CYCGRG 3 cut(s) 476, 538, 648
BmgT120I GGNCC 1 cut(s) 899
BmiI GGNNCC 4 cut(s) 536, 708, 900, 1011
BmrFI CCNGG 3 cut(s) 424, 599, 704
BmsI GCATC 2 cut(s) 198, 490
BoxI GACNNNNGTC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 725
Bpu10I CCTNAGC 1 cut(s) 993
Bpu14I TTCGAA 2 cut(s) 441, 845
BsaHI GRCGYC 1 cut(s) 773
BsaI GGTCTC 4 cut(s) 341, 563, 723, 740
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 709
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 3 cut(s) 424, 599, 704
BseGI GGATG 4 cut(s) 111, 189, 276, 934
BseLI CCNNNNNNNGG 2 cut(s) 185, 709
BseMII CTCAG 2 cut(s) 261, 984
BseNI ACTGG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 567
BseX3I CGGCCG 1 cut(s) 636
BseXI GCAGC 4 cut(s) 450, 568, 672, 1033
BseYI CCCAGC 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 639
BshFI GGCC 3 cut(s) 5, 107, 638
BsiEI CGRYCG 1 cut(s) 639
BsiHKAI GWGCWC 2 cut(s) 67, 915
BsiHKCI CYCGRG 3 cut(s) 476, 538, 648
BsiSI CCGG 4 cut(s) 234, 544, 635, 710
BslFI GGGAC 2 cut(s) 128, 181
BslI CCNNNNNNNGG 2 cut(s) 185, 709
BsmAI GTCTC 4 cut(s) 341, 563, 723, 740
BsmFI GGGAC 2 cut(s) 128, 181
BsmI GAATGC 1 cut(s) 870
BsnI GGCC 3 cut(s) 5, 107, 638
Bso31I GGTCTC 4 cut(s) 341, 563, 723, 740
BsoBI CYCGRG 3 cut(s) 476, 538, 648
Bsp119I TTCGAA 2 cut(s) 441, 845
Bsp1286I GDGCHC 3 cut(s) 67, 567, 915
Bsp143I GATC 4 cut(s) 504, 615, 783, 1057
BspACI CCGC 9 cut(s) 6, 52, 69, 211, 214, 261, 280, 393, 418
BspANI GGCC 3 cut(s) 5, 107, 638
BspCNI CTCAG 2 cut(s) 262, 985
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 4 cut(s) 536, 708, 900, 1011
BspMAI CTGCAG 2 cut(s) 468, 690
BspPI GGATC 1 cut(s) 1052
BspT104I TTCGAA 2 cut(s) 441, 845
BspTI CTTAAG 1 cut(s) 977
BspTNI GGTCTC 4 cut(s) 341, 563, 723, 740
BsrBI CCGCTC 2 cut(s) 8, 420
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 709
BssMI GATC 4 cut(s) 504, 615, 783, 1057
BssNI GRCGYC 1 cut(s) 773
BssSI CACGAG 3 cut(s) 428, 566, 865
Bst2BI CACGAG 3 cut(s) 428, 566, 865
Bst2UI CCWGG 3 cut(s) 424, 599, 704
Bst4CI ACNGT 3 cut(s) 322, 557, 725
BstACI GRCGYC 1 cut(s) 773
BstAFI CTTAAG 1 cut(s) 977
BstBI TTCGAA 2 cut(s) 441, 845
BstC8I GCNNGC 3 cut(s) 390, 711, 1040
BstDEI CTNAG 3 cut(s) 270, 807, 993
BstF5I GGATG 4 cut(s) 111, 189, 276, 934
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 4 cut(s) 507, 618, 786, 1060
BstMAI GTCTC 4 cut(s) 341, 563, 723, 740
BstMBI GATC 4 cut(s) 504, 615, 783, 1057
BstMCI CGRYCG 1 cut(s) 639
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstNI CCWGG 3 cut(s) 424, 599, 704
BstPAI GACNNNNGTC 1 cut(s) 303
BstSCI CCNGG 3 cut(s) 422, 597, 702
BstSFI CTRYAG 2 cut(s) 464, 686
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 4 cut(s) 450, 568, 672, 1033
BstZI CGGCCG 1 cut(s) 636
BsuRI GGCC 3 cut(s) 5, 107, 638
BtsCI GGATG 4 cut(s) 111, 189, 276, 934
BtsIMutI CAGTG 2 cut(s) 519, 943
Cac8I GCNNGC 3 cut(s) 390, 711, 1040
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 899
CseI GACGC 1 cut(s) 762
Csp6I GTAC 3 cut(s) 125, 558, 664
CviAII CATG 1 cut(s) 460
CviQI GTAC 3 cut(s) 125, 558, 664
DdeI CTNAG 3 cut(s) 270, 807, 993
DpnI GATC 4 cut(s) 506, 617, 785, 1059
DpnII GATC 4 cut(s) 504, 615, 783, 1057
EaeI YGGCCR 2 cut(s) 3, 636
EagI CGGCCG 1 cut(s) 636
EciI GGCGGA 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 67
Eco31I GGTCTC 4 cut(s) 341, 563, 723, 740
Eco32I GATATC 2 cut(s) 829, 934
Eco47I GGWCC 1 cut(s) 899
Eco52I CGGCCG 1 cut(s) 636
Eco53kI GAGCTC 1 cut(s) 65
Eco88I CYCGRG 3 cut(s) 476, 538, 648
EcoICRI GAGCTC 1 cut(s) 65
EcoRII CCWGG 3 cut(s) 422, 597, 702
EcoRV GATATC 2 cut(s) 829, 934
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 1 cut(s) 463
FaiI YATR 8 cut(s) 32, 461, 792, 798, 800, 987, 1019, 1056
FaqI GGGAC 2 cut(s) 128, 181
FatI CATG 1 cut(s) 459
FauI CCCGC 1 cut(s) 76
FbaI TGATCA 1 cut(s) 615
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 8 cut(s) 6, 214, 261, 393, 464, 582, 686, 1022
FokI GGATG 4 cut(s) 98, 176, 263, 941
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 8 cut(s) 6, 214, 261, 393, 464, 582, 686, 1022
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 283
GluI GCNGC 8 cut(s) 6, 214, 261, 393, 464, 582, 686, 1022
GsaI CCCAGC 1 cut(s) 388
GsuI CTGGAG 1 cut(s) 725
HaeIII GGCC 3 cut(s) 5, 107, 638
HapII CCGG 4 cut(s) 234, 544, 635, 710
HgaI GACGC 1 cut(s) 762
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 773
Hin1II CATG 1 cut(s) 463
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 2 cut(s) 325, 367
HindII GTYRAC 2 cut(s) 325, 367
HinfI GANTC 3 cut(s) 224, 252, 272
HpaII CCGG 4 cut(s) 234, 544, 635, 710
HphI GGTGA 4 cut(s) 109, 299, 625, 901
Hpy166II GTNNAC 3 cut(s) 325, 367, 817
Hpy188I TCNGA 8 cut(s) 28, 62, 251, 271, 298, 316, 910, 1014
Hpy188III TCNNGA 4 cut(s) 344, 502, 532, 737
Hpy8I GTNNAC 3 cut(s) 325, 367, 817
Hpy99I CGWCG 5 cut(s) 206, 260, 371, 644, 778
HpyAV CCTTC 6 cut(s) 31, 172, 501, 880, 889, 1000
HpyCH4III ACNGT 3 cut(s) 322, 557, 725
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 4 cut(s) 466, 688, 870, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 3 cut(s) 270, 807, 993
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 1 cut(s) 773
Hsp92II CATG 1 cut(s) 463
HspAI GCGC 1 cut(s) 282
KroI GCCGGC 1 cut(s) 709
KroNI GCCGGC 1 cut(s) 711
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 4 cut(s) 504, 615, 783, 1057
LmnI GCTCC 5 cut(s) 13, 70, 425, 706, 910
Lsp1109I GCAGC 4 cut(s) 450, 568, 672, 1033
LweI GCATC 2 cut(s) 198, 490
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 506, 617, 785, 1059
MbiI CCGCTC 2 cut(s) 8, 420
MboI GATC 4 cut(s) 504, 615, 783, 1057
MboII GAAGA 4 cut(s) 635, 638, 895, 904
MhlI GDGCHC 3 cut(s) 67, 567, 915
MluCI AATT 3 cut(s) 354, 838, 949
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 5 cut(s) 51, 229, 321, 339, 906
MroNI GCCGGC 1 cut(s) 709
MseI TTAA 1 cut(s) 978
MslI CAYNNNNRTG 1 cut(s) 822
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 4 cut(s) 234, 544, 635, 710
MspR9I CCNGG 3 cut(s) 424, 599, 704
Mva1269I GAATGC 1 cut(s) 870
MvaI CCWGG 3 cut(s) 424, 599, 704
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 644
NaeI GCCGGC 1 cut(s) 711
NdeII GATC 4 cut(s) 504, 615, 783, 1057
NgoMIV GCCGGC 1 cut(s) 709
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 4 cut(s) 536, 708, 900, 1011
NmuCI GTSAC 1 cut(s) 305
NspV TTCGAA 2 cut(s) 441, 845
PaeR7I CTCGAG 1 cut(s) 648
PctI GAATGC 1 cut(s) 870
PdiI GCCGGC 1 cut(s) 711
PfeI GAWTC 2 cut(s) 224, 252
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 8 cut(s) 7, 215, 262, 394, 465, 583, 687, 1023
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PshAI GACNNNNGTC 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 67
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 422, 597, 702
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 3 cut(s) 422, 597, 702
PspN4I GGNNCC 4 cut(s) 536, 708, 900, 1011
PspPI GGNCC 1 cut(s) 899
PspXI VCTCGAGB 1 cut(s) 648
PstI CTGCAG 2 cut(s) 468, 690
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 3 cut(s) 126, 559, 665
RsaNI GTAC 3 cut(s) 125, 558, 664
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 1 cut(s) 67
SalI GTCGAC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 978
SatI GCNGC 8 cut(s) 6, 214, 261, 393, 464, 582, 686, 1022
Sau3AI GATC 4 cut(s) 504, 615, 783, 1057
Sau96I GGNCC 1 cut(s) 899
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 424, 599, 704
SduI GDGCHC 3 cut(s) 67, 567, 915
SetI ASST 9 cut(s) 67, 81, 210, 411, 530, 687, 891, 999, 1011
SfaNI GCATC 2 cut(s) 198, 490
SfcI CTRYAG 2 cut(s) 464, 686
Sfr274I CTCGAG 1 cut(s) 648
SfuI TTCGAA 2 cut(s) 441, 845
SinI GGWCC 1 cut(s) 899
SlaI CTCGAG 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 2 cut(s) 648, 977
SmoI CTYRAG 2 cut(s) 648, 977
Sse9I AATT 3 cut(s) 354, 838, 949
SsiI CCGC 9 cut(s) 6, 52, 69, 211, 214, 261, 280, 393, 418
SspI AATATT 1 cut(s) 854
SspMI CTAG 1 cut(s) 344
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 3 cut(s) 422, 597, 702
TaaI ACNGT 3 cut(s) 322, 557, 725
TaiI ACGT 1 cut(s) 411
TaqI TCGA 7 cut(s) 366, 441, 501, 649, 738, 786, 845
TasI AATT 3 cut(s) 354, 838, 949
TatI WGTACW 1 cut(s) 663
TauI GCSGC 4 cut(s) 8, 216, 263, 395
TfiI GAWTC 2 cut(s) 224, 252
Tru1I TTAA 1 cut(s) 978
Tru9I TTAA 1 cut(s) 978
TscAI CASTG 2 cut(s) 526, 943
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 4 cut(s) 463, 581, 685, 1021
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 402, 815
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 2 cut(s) 526, 943
Tth111I GACNNNGTC 1 cut(s) 320
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 899
XapI RAATTY 1 cut(s) 838
XbaI TCTAGA 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 648
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.