Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004711

Physical Location & Seq

Genomic Coordinates Reverse (-)

60077401 .. 60082526

Gene Structure 5126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGCCCCAAGAACACCACCACCACCACCACCCGGAAACCCTAACACCCTCCACCACCACCACATCCACCACCGCCGCCGCCATTCCCTGCGGCAAATGCGGCTCCATGGCCGCACCTCCGCCGCCGCTGTCGTGGCCGGACACCTCCCCACCCCCAAACTACCGCCCCATCCGAGCCCCCGCCATCAACCTCCCTCAAAACCAACAAGCCATAATCCTCACCCCCGTCCCTCAAGCCAAGTCCGTCCCTCCAATCTCACCCCCTTTCCATTTCCAAACCCCCTCCAAAATCATCCAATCCCCCGACGACCTCCGCCGCTTCCACGACTCCGATTCCGGCAAACACTTCCTCGGCTTCGTCGTCGCCCTCTCCGAATCCATCCGCTCCAAGAAAATCTCCGACCCCTGCCACCACTCCCCTGTCACCACCGCCATCGTTTCCATTCTCGACACTCTCCTCCGTTGGATCGACGAAATCCCTCCCACTCAGCAAGCCGCCCGATATGGCAATGTTTCGTACCGCGTCTGGCATGAGCGTTTGGTCGAGAATAGCTCCAACCTAATGATGCAATTCCTCCCCCAACATCTTGAAGCTTCCACCGTCGAGATCGTCCCTTATTTCACCGACAGCTTCGGAAACGCGAGCAGGATCGACTATGGTACCGGCCACGAGACCAATTTCGCGGCGTGGCTTTATTGCCTGGCGAGAATGGAGGTCATTAAGGAAGAGGATTACCCTGCCGTGGTGGCCAGAGTGTTCGTCAAGTACTTGGAGTTGATGAGGAAGCTGCAGCTGGTGTATTGCTTAGAGCCGGCGGGGTCTCACGGCGTTTGGGGCCTTGACGACTACCATTTCCTGCCCTTCATTTTCGGCTCTTCGCAGTTGATTGATCACAAGCATATGAAGCCCAAGTCTATTCATAATGATGATATATTGGAGAATTTTTCAAATGAGTATATGTATCTTTCGGGGATTGCTTTTGTAAAGAAGGTGAAGAAGGGTCCGTTTTCGGAGCACTCTCCTTTGTTGGATGATATCAGTGGAGTGCCGAATTGGAACAAAGTCAATAAGGGGATGCTGAAGATGTATAAGGTTGAGGTGTTGGAGAAGGTACCCATCATGCAGCATTTCCTATTTGGCTGGCTCATCAACTGGACTAGTTGCAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

391

Amino Acids

44.36

Weight (kDa)

6.72

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPA	PF03095	95 - 386	1.7e-122	Phosphotyrosyl phosphate activator (PTPA) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08960
fragaria_vesca	FvH4_6g23990
malus_domestica	MD08G1227100.v1.1 MD15G1419400.v1.1
prunus_persica	Prupe.1G521000_v2.0.a1 Prupe.1G521000_v2.0.a1
pyrus_communis	pycom08g19810 pycom15g37230
rosa_chinensis	RchiOBHm_Chr1g0321971 RchiOBHm_Chr7g0243401
rosa_laevigata	RLG00000000849 RLG00000030399
rosa_multiflora	Rmu_sc0000427.1_g000001 Rmu_sc0001036.1_g000017 Rmu_sc0007027.1_g000005 Rmu_sc0019965.1_g000001 Rmu_sc0029142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011200 Rroxscaffold_3G00222120 Rroxscaffold_4G00327390
rosa_rugosa	Rorug01G0034800 Rorug07G0319100
rosa_samantha	Rh1AG047600 Rh1BG045500 Rh1DG055900 Rh7AG475200 Rh7BG445100 Rh7CG491400 Rh7DG459700
rosa_wichuraiana	Rw1G004340 Rw7G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	662, 1114
AccB1I	GGYRCC	2 cut(s)	662, 1114
AccBSI	CCGCTC	1 cut(s)	387
AccII	CGCG	3 cut(s)	525, 644, 686
AclWI	GGATC	2 cut(s)	476, 659
AcoI	YGGCCR	4 cut(s)	111, 137, 667, 750
AcsI	RAATTY	1 cut(s)	943
AcuI	CTGAAG	1 cut(s)	1103
AfaI	GTAC	4 cut(s)	521, 664, 770, 1116
AfiI	CCNNNNNNNGG	2 cut(s)	34, 745
AgsI	TTSAA	2 cut(s)	593, 951
AhlI	ACTAGT	1 cut(s)	1160
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	5 cut(s)	555, 596, 633, 790, 796
AluI	AGCT	5 cut(s)	555, 596, 633, 790, 796
Alw21I	GWGCWC	1 cut(s)	1020
Alw26I	GTCTC	2 cut(s)	668, 828
AlwI	GGATC	2 cut(s)	476, 659
AoxI	GGCC	5 cut(s)	111, 137, 667, 750, 838
ApeKI	GCWGC	3 cut(s)	790, 793, 1126
ApoI	RAATTY	1 cut(s)	943
Asp718I	GGTACC	2 cut(s)	662, 1114
AspS9I	GGNCC	2 cut(s)	838, 1004
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	5 cut(s)	214, 252, 418, 616, 1006
AvaII	GGWCC	1 cut(s)	1004
BaeI	ACNNNNGTAYC	2 cut(s)	646, 679
BalI	TGGCCA	1 cut(s)	752
BanI	GGYRCC	2 cut(s)	662, 1114
BanII	GRGCYC	2 cut(s)	9, 181
BauI	CACGAG	1 cut(s)	671
Bbv12I	GWGCWC	1 cut(s)	1020
BbvI	GCAGC	3 cut(s)	777, 805, 1138
BccI	CCATC	5 cut(s)	179, 194, 389, 443, 1127
BceAI	ACGGC	2 cut(s)	728, 844
BciT130I	CCWGG	1 cut(s)	704
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	668, 828
BcuI	ACTAGT	1 cut(s)	1160
BfaI	CTAG	1 cut(s)	1161
BfmI	CTRYAG	1 cut(s)	791
BglI	GCCNNNNNGGC	1 cut(s)	749
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	2 cut(s)	35, 704
Bme18I	GGWCC	1 cut(s)	1004
BmgT120I	GGNCC	2 cut(s)	838, 1004
BmiI	GGNNCC	6 cut(s)	6, 106, 664, 839, 1005, 1116
BmrFI	CCNGG	2 cut(s)	35, 704
BmsI	GCATC	2 cut(s)	558, 1068
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	35
BsaI	GGTCTC	2 cut(s)	668, 828
BsaJI	CCNNGG	3 cut(s)	108, 352, 744
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 745
Bse118I	RCCGGY	2 cut(s)	665, 814
Bse1I	ACTGG	1 cut(s)	1160
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	704
BseDI	CCNNGG	3 cut(s)	108, 352, 744
BseGI	GGATG	6 cut(s)	65, 171, 294, 381, 1039, 1083
BseLI	CCNNNNNNNGG	2 cut(s)	34, 745
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	1160
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	777, 805, 1138
Bsh1236I	CGCG	3 cut(s)	525, 644, 686
BshFI	GGCC	5 cut(s)	113, 139, 669, 752, 840
BshNI	GGYRCC	2 cut(s)	662, 1114
BsiHKAI	GWGCWC	1 cut(s)	1020
BsiSI	CCGG	5 cut(s)	35, 140, 339, 666, 815
BslFI	GGGAC	3 cut(s)	215, 233, 599
BslI	CCNNNNNNNGG	2 cut(s)	34, 745
BsmAI	GTCTC	2 cut(s)	668, 828
BsmFI	GGGAC	3 cut(s)	215, 233, 599
BsnI	GGCC	5 cut(s)	113, 139, 669, 752, 840
Bso31I	GGTCTC	2 cut(s)	668, 828
Bsp1286I	GDGCHC	3 cut(s)	9, 181, 1020
Bsp143I	GATC	4 cut(s)	468, 609, 651, 892
Bsp19I	CCATGG	1 cut(s)	108
BspANI	GGCC	5 cut(s)	113, 139, 669, 752, 840
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	3 cut(s)	525, 644, 686
BspLI	GGNNCC	6 cut(s)	6, 106, 664, 839, 1005, 1116
BspMAI	CTGCAG	1 cut(s)	795
BspPI	GGATC	2 cut(s)	476, 659
BspQI	GCTCTTC	1 cut(s)	883
BspT107I	GGYRCC	2 cut(s)	662, 1114
BspTNI	GGTCTC	2 cut(s)	668, 828
BsrBI	CCGCTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	2 cut(s)	665, 814
BsrI	ACTGG	1 cut(s)	1160
BssAI	RCCGGY	2 cut(s)	665, 814
BssECI	CCNNGG	3 cut(s)	108, 352, 744
BssMI	GATC	4 cut(s)	468, 609, 651, 892
BssSI	CACGAG	1 cut(s)	671
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	1 cut(s)	604
Bst6I	CTCTTC	2 cut(s)	723, 883
BstC8I	GCNNGC	4 cut(s)	495, 646, 816, 1145
BstDEI	CTNAG	2 cut(s)	489, 808
BstDSI	CCRYGG	2 cut(s)	108, 744
BstF5I	GGATG	6 cut(s)	65, 171, 294, 381, 1039, 1083
BstFNI	CGCG	3 cut(s)	525, 644, 686
BstKTI	GATC	4 cut(s)	471, 612, 654, 895
BstMAI	GTCTC	2 cut(s)	668, 828
BstMBI	GATC	4 cut(s)	468, 609, 651, 892
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 102, 136, 749, 837, 907
BstNI	CCWGG	1 cut(s)	704
BstSCI	CCNGG	2 cut(s)	33, 702
BstSFI	CTRYAG	1 cut(s)	791
BstUI	CGCG	3 cut(s)	525, 644, 686
BstV1I	GCAGC	3 cut(s)	777, 805, 1138
BsuRI	GGCC	5 cut(s)	113, 139, 669, 752, 840
BtgI	CCRYGG	2 cut(s)	108, 744
BtsCI	GGATG	6 cut(s)	65, 171, 294, 381, 1039, 1083
BtsIMutI	CAGTG	1 cut(s)	1048
Cac8I	GCNNGC	4 cut(s)	495, 646, 816, 1145
Cfr10I	RCCGGY	2 cut(s)	665, 814
Cfr13I	GGNCC	2 cut(s)	838, 1004
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	4 cut(s)	520, 663, 769, 1115
CviAII	CATG	3 cut(s)	109, 533, 1123
CviQI	GTAC	4 cut(s)	520, 663, 769, 1115
DdeI	CTNAG	2 cut(s)	489, 808
DpnI	GATC	4 cut(s)	470, 611, 653, 894
DpnII	GATC	4 cut(s)	468, 609, 651, 892
EaeI	YGGCCR	4 cut(s)	111, 137, 667, 750
Eam1104I	CTCTTC	2 cut(s)	723, 883
EarI	CTCTTC	2 cut(s)	723, 883
EciI	GGCGGA	2 cut(s)	111, 305
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	2 cut(s)	9, 181
Eco31I	GGTCTC	2 cut(s)	668, 828
Eco32I	GATATC	1 cut(s)	1039
Eco47I	GGWCC	1 cut(s)	1004
Eco57I	CTGAAG	1 cut(s)	1103
EcoO109I	RGGNCCY	1 cut(s)	838
EcoRII	CCWGG	1 cut(s)	702
EcoRV	GATATC	1 cut(s)	1039
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	9, 181
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	112, 536, 1126
FaqI	GGGAC	3 cut(s)	215, 233, 599
FatI	CATG	3 cut(s)	108, 532, 1122
FauI	CCCGC	2 cut(s)	190, 811
FauNDI	CATATG	1 cut(s)	903
FbaI	TGATCA	1 cut(s)	892
FokI	GGATG	6 cut(s)	52, 158, 281, 368, 1046, 1090
FriOI	GRGCYC	2 cut(s)	9, 181
FspBI	CTAG	1 cut(s)	1161
HaeIII	GGCC	5 cut(s)	113, 139, 669, 752, 840
HapII	CCGG	5 cut(s)	35, 140, 339, 666, 815
HgaI	GACGC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	112, 536, 1126
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	3 cut(s)	329, 335, 377
HpaII	CCGG	5 cut(s)	35, 140, 339, 666, 815
HphI	GGTGA	5 cut(s)	214, 252, 418, 616, 1006
Hpy188I	TCNGA	6 cut(s)	176, 334, 376, 403, 638, 1015
Hpy188III	TCNNGA	4 cut(s)	449, 547, 590, 607
Hpy99I	CGWCG	5 cut(s)	311, 365, 368, 476, 608
HpyAV	CCTTC	4 cut(s)	874, 985, 994, 1105
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4V	TGCA	4 cut(s)	571, 793, 1126, 1167
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 102, 136, 749, 837, 907
HpyF3I	CTNAG	2 cut(s)	489, 808
Hsp92II	CATG	3 cut(s)	112, 536, 1126
KpnI	GGTACC	2 cut(s)	666, 1118
KroI	GCCGGC	1 cut(s)	814
KroNI	GCCGGC	1 cut(s)	816
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	4 cut(s)	468, 609, 651, 892
LguI	GCTCTTC	1 cut(s)	883
LmnI	GCTCC	5 cut(s)	4, 110, 392, 560, 1015
Lsp1109I	GCAGC	3 cut(s)	777, 805, 1138
LweI	GCATC	2 cut(s)	558, 1068
MaeI	CTAG	1 cut(s)	1161
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	4 cut(s)	470, 611, 653, 894
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	4 cut(s)	468, 609, 651, 892
MboII	GAAGA	4 cut(s)	740, 870, 1009, 1096
MhlI	GDGCHC	3 cut(s)	9, 181, 1020
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	4 cut(s)	572, 679, 943, 1054
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	5 cut(s)	426, 446, 582, 1011, 1086
Mox20I	TGGCCA	1 cut(s)	752
MroNI	GCCGGC	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	1 cut(s)	723
MslI	CAYNNNNRTG	1 cut(s)	927
Msp20I	TGGCCA	1 cut(s)	752
MspA1I	CMGCKG	2 cut(s)	130, 796
MspI	CCGG	5 cut(s)	35, 140, 339, 666, 815
MspR9I	CCNGG	2 cut(s)	35, 704
MvaI	CCWGG	1 cut(s)	704
MvnI	CGCG	3 cut(s)	525, 644, 686
MwoI	GCNNNNNNNGC	6 cut(s)	99, 102, 136, 749, 837, 907
NaeI	GCCGGC	1 cut(s)	816
NciI	CCSGG	1 cut(s)	35
NcoI	CCATGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	903
NdeII	GATC	4 cut(s)	468, 609, 651, 892
NgoMIV	GCCGGC	1 cut(s)	814
NlaIII	CATG	3 cut(s)	112, 536, 1126
NlaIV	GGNNCC	6 cut(s)	6, 106, 664, 839, 1005, 1116
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 372
PdiI	GCCGGC	1 cut(s)	816
PfeI	GAWTC	2 cut(s)	335, 377
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	702
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	6 cut(s)	6, 106, 664, 839, 1005, 1116
PspPI	GGNCC	2 cut(s)	838, 1004
PstI	CTGCAG	1 cut(s)	795
PvuII	CAGCTG	1 cut(s)	796
RsaI	GTAC	4 cut(s)	521, 664, 770, 1116
RsaNI	GTAC	4 cut(s)	520, 663, 769, 1115
RseI	CAYNNNNRTG	1 cut(s)	927
SapI	GCTCTTC	1 cut(s)	883
SaqAI	TTAA	1 cut(s)	723
Sau3AI	GATC	4 cut(s)	468, 609, 651, 892
Sau96I	GGNCC	2 cut(s)	838, 1004
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	35, 704
SduI	GDGCHC	3 cut(s)	9, 181, 1020
SfaNI	GCATC	2 cut(s)	558, 1068
SfcI	CTRYAG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	1004
SmiMI	CAYNNNNRTG	1 cut(s)	927
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SpeI	ACTAGT	1 cut(s)	1160
Sse9I	AATT	4 cut(s)	572, 679, 943, 1054
SspMI	CTAG	1 cut(s)	1161
StyD4I	CCNGG	2 cut(s)	33, 702
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	604
TaqI	TCGA	5 cut(s)	450, 471, 546, 606, 654
TasI	AATT	4 cut(s)	572, 679, 943, 1054
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	2 cut(s)	335, 377
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	1 cut(s)	1048
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	3 cut(s)	790, 793, 1126
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	856, 911, 920
TspGWI	ACGGA	3 cut(s)	235, 452, 996
TspRI	CASTG	1 cut(s)	1048
VpaK11BI	GGWCC	1 cut(s)	1004
XapI	RAATTY	1 cut(s)	943
XspI	CTAG	1 cut(s)	1161
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.