Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004711

Physical Location & Seq

Genomic Coordinates Forward (+)

8959678 .. 8964516

Gene Structure 4839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG055900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAGCCCCAAGAACACCACCACCATCACCACCACCACCCGGAAACCCTAACACCCTCTACCACCACCACCTCCACCACCGCCGCCGCCATTCCCTGCGGCAAATGCGGCGCCATGGCCGCACCTCAGCCGCCGCTGTCGTGGCCGGACACCTCCCCACCCCCAAACTACCGACCCATCCGAGCCCCCGCCATCAACCTCCCTCAAAACCAACAAGCCATAATCCTCACTCCCGTCCCTCAAGCCAAGTCCGTGCCCCCAATCTCACCCCCTTTCCATTTCCTAACCCCCTCCAAGATCATCCAATCCCCCGACGACCTCCGCCGCTTCCACGACTCCGATTCCGGCAAACACTTCCTCGGCTTCGTCGTCGCCCTCTCCGAATCCATCCGGTCCAAGAAAATCTCCGACCCTTGCCACCACTCCCCCGTCACCACCGCCGTCGTCTCCATTCTCGACACTCTCCTCCGTTGGATCGACGAAATCCCTCCCACTCAGCAAGCCGCCCGATACGGCAACGTTTCGTACCGCGTCTGGCACGAGCGTTTGGTCGAGAATAGCTACAACCTAATGATGCAATTCCTCCCCCAACATCTTGAAGCTTCCACCGTCGAGATCGTCCCTTATTTCACAGACAGCTTCGGAAACGCGAGCCGGATCGACTACGGCACCGGCCACGAGACCAATTTCGCGGCGTGGCTTTATTGCCTGGCGAGAATGGAGGTCATTAAGGAAGAGGATTACCCTGCCGTGGTCGCCAGAGTGTTCGTCAAGTACTTGGAGTTGATGAGGAAGCTGCAGCTGGTGTATTGCTTAGAGCCGGCGGGGTCTCACGGCGTTTGGGGCCTTGACGACTACCATTTCCTGCCCTTCATTTTCGGCTCTTCGCAGTTGATTGATCACAAGCATATGAAGCCCAAGTCTATTCATAATGATGATATACTGGAGAATTTTTCAAATGAGTATATGTATCTTTCGGGGATTGCTTTTGTGAAGAAGGTGAAGAAGGGTCCGTTTTCGGAGCACTCTCCTTTGTTGGATGATATCAGTGGAGTGCCGAATTGGAACAAAGTCAATAAGGGAATGCTGAAGATGTATAAGGTTGAGGTGTTGGAGAAGGTACCCATCATGCAGCATTTCCTATTTGGCTGGCTCATCAACTGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

389

Amino Acids

44.23

Weight (kDa)

6.53

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPA	PF03095	97 - 388	3.3e-122	Phosphotyrosyl phosphate activator (PTPA) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08960
fragaria_vesca	FvH4_6g23990
malus_domestica	MD08G1227100.v1.1 MD15G1419400.v1.1
prunus_persica	Prupe.1G521000_v2.0.a1 Prupe.1G521000_v2.0.a1
pyrus_communis	pycom08g19810 pycom15g37230
rosa_chinensis	RchiOBHm_Chr1g0321971 RchiOBHm_Chr7g0243401
rosa_laevigata	RLG00000000849 RLG00000030399
rosa_multiflora	Rmu_sc0000427.1_g000001 Rmu_sc0001036.1_g000017 Rmu_sc0007027.1_g000005 Rmu_sc0019965.1_g000001 Rmu_sc0029142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011200 Rroxscaffold_3G00222120 Rroxscaffold_4G00327390
rosa_rugosa	Rorug01G0034800 Rorug07G0319100
rosa_samantha	Rh1AG047600 Rh1BG045500 Rh1DG055900 Rh7AG475200 Rh7BG445100 Rh7CG491400 Rh7DG459700
rosa_wichuraiana	Rw1G004340 Rw7G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1120
AccB1I	GGYRCC	3 cut(s)	110, 668, 1120
AccII	CGCG	3 cut(s)	531, 650, 692
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	2 cut(s)	482, 665
AcoI	YGGCCR	3 cut(s)	117, 143, 673
AcsI	RAATTY	1 cut(s)	949
AcuI	CTGAAG	1 cut(s)	1109
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	3 cut(s)	527, 776, 1122
AfiI	CCNNNNNNNGG	2 cut(s)	40, 751
AgsI	TTSAA	2 cut(s)	599, 957
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	5 cut(s)	561, 602, 639, 796, 802
AluI	AGCT	5 cut(s)	561, 602, 639, 796, 802
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	3 cut(s)	451, 674, 834
AlwI	GGATC	2 cut(s)	482, 665
AoxI	GGCC	4 cut(s)	117, 143, 673, 844
ApeKI	GCWGC	3 cut(s)	796, 799, 1132
ApoI	RAATTY	1 cut(s)	949
Asp718I	GGTACC	1 cut(s)	1120
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	3 cut(s)	393, 844, 1010
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	4 cut(s)	20, 258, 424, 1012
AvaII	GGWCC	2 cut(s)	393, 1010
BaeGI	GKGCMC	1 cut(s)	258
BanI	GGYRCC	3 cut(s)	110, 668, 1120
BanII	GRGCYC	2 cut(s)	9, 187
BauI	CACGAG	2 cut(s)	539, 677
Bbv12I	GWGCWC	1 cut(s)	1026
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	783, 811, 1144
BccI	CCATC	5 cut(s)	33, 185, 200, 395, 1133
BceAI	ACGGC	5 cut(s)	425, 529, 682, 734, 850
BciT130I	CCWGG	1 cut(s)	710
BclI	TGATCA	1 cut(s)	898
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	451, 674, 834
BfmI	CTRYAG	1 cut(s)	797
BfoI	RGCGCY	1 cut(s)	114
BmcAI	AGTACT	1 cut(s)	776
Bme1390I	CCNGG	2 cut(s)	41, 710
Bme18I	GGWCC	2 cut(s)	393, 1010
BmgT120I	GGNCC	3 cut(s)	393, 844, 1010
BmiI	GGNNCC	6 cut(s)	6, 112, 670, 845, 1011, 1122
BmrFI	CCNGG	2 cut(s)	41, 710
BmsI	GCATC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	965
Bpu10I	CCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	2 cut(s)	674, 834
BsaJI	CCNNGG	3 cut(s)	114, 358, 750
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 751
Bse118I	RCCGGY	2 cut(s)	671, 820
Bse1I	ACTGG	2 cut(s)	948, 1166
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	3 cut(s)	114, 358, 750
BseGI	GGATG	4 cut(s)	177, 300, 387, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	40, 751
BseMII	CTCAG	2 cut(s)	140, 509
BseNI	ACTGG	2 cut(s)	948, 1166
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	783, 811, 1144
Bsh1236I	CGCG	3 cut(s)	531, 650, 692
BshFI	GGCC	4 cut(s)	119, 145, 675, 846
BshNI	GGYRCC	3 cut(s)	110, 668, 1120
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiSI	CCGG	7 cut(s)	41, 146, 345, 391, 655, 672, 821
BslFI	GGGAC	2 cut(s)	221, 605
BslI	CCNNNNNNNGG	2 cut(s)	40, 751
BsmAI	GTCTC	3 cut(s)	451, 674, 834
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	2 cut(s)	221, 605
BsmI	GAATGC	1 cut(s)	1089
BsnI	GGCC	4 cut(s)	119, 145, 675, 846
Bso31I	GGTCTC	2 cut(s)	674, 834
Bsp1286I	GDGCHC	4 cut(s)	9, 187, 258, 1026
Bsp143I	GATC	5 cut(s)	297, 474, 615, 657, 898
Bsp19I	CCATGG	1 cut(s)	114
BspANI	GGCC	4 cut(s)	119, 145, 675, 846
BspCNI	CTCAG	2 cut(s)	139, 508
BspFNI	CGCG	3 cut(s)	531, 650, 692
BspLI	GGNNCC	6 cut(s)	6, 112, 670, 845, 1011, 1122
BspMAI	CTGCAG	1 cut(s)	801
BspPI	GGATC	2 cut(s)	482, 665
BspQI	GCTCTTC	1 cut(s)	889
BspT107I	GGYRCC	3 cut(s)	110, 668, 1120
BspTNI	GGTCTC	2 cut(s)	674, 834
BsrFI	RCCGGY	2 cut(s)	671, 820
BsrI	ACTGG	2 cut(s)	948, 1166
BssAI	RCCGGY	2 cut(s)	671, 820
BssECI	CCNNGG	3 cut(s)	114, 358, 750
BssMI	GATC	5 cut(s)	297, 474, 615, 657, 898
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	2 cut(s)	539, 677
BssT1I	CCWWGG	1 cut(s)	114
Bst2BI	CACGAG	2 cut(s)	539, 677
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	2 cut(s)	729, 889
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	4 cut(s)	501, 652, 822, 1151
BstDEI	CTNAG	3 cut(s)	126, 495, 814
BstDSI	CCRYGG	2 cut(s)	114, 750
BstF5I	GGATG	4 cut(s)	177, 300, 387, 1045
BstFNI	CGCG	3 cut(s)	531, 650, 692
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	5 cut(s)	300, 477, 618, 660, 901
BstMAI	GTCTC	3 cut(s)	451, 674, 834
BstMBI	GATC	5 cut(s)	297, 474, 615, 657, 898
BstMWI	GCNNNNNNNGC	7 cut(s)	105, 108, 119, 142, 755, 843, 913
BstNI	CCWGG	1 cut(s)	710
BstSCI	CCNGG	2 cut(s)	39, 708
BstSFI	CTRYAG	1 cut(s)	797
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	3 cut(s)	531, 650, 692
BstV1I	GCAGC	3 cut(s)	783, 811, 1144
BsuRI	GGCC	4 cut(s)	119, 145, 675, 846
BtgI	CCRYGG	2 cut(s)	114, 750
BtsCI	GGATG	4 cut(s)	177, 300, 387, 1045
BtsIMutI	CAGTG	1 cut(s)	1054
Cac8I	GCNNGC	4 cut(s)	501, 652, 822, 1151
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	2 cut(s)	671, 820
Cfr13I	GGNCC	3 cut(s)	393, 844, 1010
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	3 cut(s)	526, 775, 1121
CviAII	CATG	2 cut(s)	115, 1129
CviQI	GTAC	3 cut(s)	526, 775, 1121
DdeI	CTNAG	3 cut(s)	126, 495, 814
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	5 cut(s)	299, 476, 617, 659, 900
DpnII	GATC	5 cut(s)	297, 474, 615, 657, 898
EaeI	YGGCCR	3 cut(s)	117, 143, 673
Eam1104I	CTCTTC	2 cut(s)	729, 889
EarI	CTCTTC	2 cut(s)	729, 889
EciI	GGCGGA	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	2 cut(s)	9, 187
Eco31I	GGTCTC	2 cut(s)	674, 834
Eco32I	GATATC	1 cut(s)	1045
Eco47I	GGWCC	2 cut(s)	393, 1010
Eco57I	CTGAAG	1 cut(s)	1109
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	1045
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	2 cut(s)	9, 187
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	2 cut(s)	118, 1132
FaqI	GGGAC	2 cut(s)	221, 605
FatI	CATG	2 cut(s)	114, 1128
FauI	CCCGC	2 cut(s)	196, 817
FauNDI	CATATG	1 cut(s)	909
FbaI	TGATCA	1 cut(s)	898
FokI	GGATG	4 cut(s)	164, 287, 374, 1052
FriOI	GRGCYC	2 cut(s)	9, 187
GlaI	GCGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	965
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	4 cut(s)	119, 145, 675, 846
HapII	CCGG	7 cut(s)	41, 146, 345, 391, 655, 672, 821
HgaI	GACGC	1 cut(s)	520
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	118, 1132
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	3 cut(s)	335, 341, 383
HpaII	CCGG	7 cut(s)	41, 146, 345, 391, 655, 672, 821
HphI	GGTGA	4 cut(s)	20, 258, 424, 1012
Hpy188I	TCNGA	6 cut(s)	182, 340, 382, 409, 644, 1021
Hpy188III	TCNNGA	4 cut(s)	455, 553, 596, 613
Hpy99I	CGWCG	6 cut(s)	317, 371, 374, 446, 482, 614
HpyAV	CCTTC	4 cut(s)	880, 991, 1000, 1111
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	577, 799, 1132
HpyF10VI	GCNNNNNNNGC	7 cut(s)	105, 108, 119, 142, 755, 843, 913
HpyF3I	CTNAG	3 cut(s)	126, 495, 814
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	118, 1132
HspAI	GCGC	1 cut(s)	111
KasI	GGCGCC	1 cut(s)	110
KpnI	GGTACC	1 cut(s)	1124
KroI	GCCGGC	1 cut(s)	820
KroNI	GCCGGC	1 cut(s)	822
Ksp22I	TGATCA	1 cut(s)	898
Kzo9I	GATC	5 cut(s)	297, 474, 615, 657, 898
LguI	GCTCTTC	1 cut(s)	889
LmnI	GCTCC	2 cut(s)	4, 1021
Lsp1109I	GCAGC	3 cut(s)	783, 811, 1144
LweI	GCATC	1 cut(s)	564
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	5 cut(s)	299, 476, 617, 659, 900
MboI	GATC	5 cut(s)	297, 474, 615, 657, 898
MboII	GAAGA	5 cut(s)	746, 876, 1006, 1015, 1102
MhlI	GDGCHC	4 cut(s)	9, 187, 258, 1026
MluCI	AATT	4 cut(s)	578, 685, 949, 1060
Mly113I	GGCGCC	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	4 cut(s)	432, 452, 1017, 1092
MroNI	GCCGGC	1 cut(s)	820
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	2 cut(s)	136, 802
MspI	CCGG	7 cut(s)	41, 146, 345, 391, 655, 672, 821
MspR9I	CCNGG	2 cut(s)	41, 710
Mva1269I	GAATGC	1 cut(s)	1089
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	3 cut(s)	531, 650, 692
MwoI	GCNNNNNNNGC	7 cut(s)	105, 108, 119, 142, 755, 843, 913
NaeI	GCCGGC	1 cut(s)	822
NarI	GGCGCC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	909
NdeII	GATC	5 cut(s)	297, 474, 615, 657, 898
NgoMIV	GCCGGC	1 cut(s)	820
NlaIII	CATG	2 cut(s)	118, 1132
NlaIV	GGNNCC	6 cut(s)	6, 112, 670, 845, 1011, 1122
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 378
PctI	GAATGC	1 cut(s)	1089
PdiI	GCCGGC	1 cut(s)	822
PfeI	GAWTC	2 cut(s)	341, 383
PleI	GAGTC	1 cut(s)	329
PluTI	GGCGCC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	329
Psp1406I	AACGTT	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	6 cut(s)	6, 112, 670, 845, 1011, 1122
PspPI	GGNCC	3 cut(s)	393, 844, 1010
PstI	CTGCAG	1 cut(s)	801
PvuII	CAGCTG	1 cut(s)	802
RsaI	GTAC	3 cut(s)	527, 776, 1122
RsaNI	GTAC	3 cut(s)	526, 775, 1121
RseI	CAYNNNNRTG	1 cut(s)	933
SapI	GCTCTTC	1 cut(s)	889
SaqAI	TTAA	1 cut(s)	729
Sau3AI	GATC	5 cut(s)	297, 474, 615, 657, 898
Sau96I	GGNCC	3 cut(s)	393, 844, 1010
ScaI	AGTACT	1 cut(s)	776
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	41, 710
SduI	GDGCHC	4 cut(s)	9, 187, 258, 1026
SfaNI	GCATC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	797
SfoI	GGCGCC	1 cut(s)	112
SinI	GGWCC	2 cut(s)	393, 1010
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	4 cut(s)	578, 685, 949, 1060
SspDI	GGCGCC	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	39, 708
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	5 cut(s)	456, 477, 552, 612, 660
TasI	AATT	4 cut(s)	578, 685, 949, 1060
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	2 cut(s)	341, 383
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	1 cut(s)	1054
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	796, 799, 1132
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	862, 917, 926
TspGWI	ACGGA	3 cut(s)	241, 458, 1002
TspRI	CASTG	1 cut(s)	1054
VpaK11BI	GGWCC	2 cut(s)	393, 1010
XapI	RAATTY	1 cut(s)	949
ZrmI	AGTACT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.