Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004711

Physical Location & Seq

Genomic Coordinates Reverse (-)

32678556 .. 32682315

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTTGTGTTGATTCCCTCTGATGTTCTTAATTTGCTGAAAAGAAAAAGTGGGATTGTTCGAGGTTCAATCTTCTCAGGATTATTTGCTTGGGAACAAAGAAAGAAAGAAAGTAGGGATCAATATTCGGGAACCTCTCCTTCTGGAAAAACAGGTCCAATGGTCCACTTGACCCAATCCCAGCATCAAGCAGATCTTGACTTCTGTTATGCAAAGCAGGGCCAGGGAAAGGTGGAGATTTGTTGCATCATGAAAGTGAGGCTTACTCTTGAGGAAAAGAGAGGAGACAATAAGTGGGTTCCGCCGATACACAGCAAAAGAGAGGAGATGAGAGGAGGGACAAGGGGATGGGAAGAGCATGAATCTGGCTATTTGATTGTTAAAGCATCAGGGAAATATCTAAGGCATGCATCACCATGTGGCACGATGGAGTTCGATTCTATTAAGCATCATATACCTTTCTTCCCCTGGATTGCATCAACAGGAAATGGAGCACCTGGATGGAAACAAGCACTCTCAGCTTTACAATGTCAAGAAGGACACAACTATGAAGATGAAACAACACCATCAGATCAGACCAGCACAAATACATTGGTTCAATCTGATACAAAAGACCTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

207

Amino Acids

23.23

Weight (kDa)

8.24

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08960
fragaria_vesca	FvH4_6g23990
malus_domestica	MD08G1227100.v1.1 MD15G1419400.v1.1
prunus_persica	Prupe.1G521000_v2.0.a1 Prupe.1G521000_v2.0.a1
pyrus_communis	pycom08g19810 pycom15g37230
rosa_chinensis	RchiOBHm_Chr1g0321971 RchiOBHm_Chr7g0243401
rosa_laevigata	RLG00000000849 RLG00000030399
rosa_multiflora	Rmu_sc0000427.1_g000001 Rmu_sc0001036.1_g000017 Rmu_sc0007027.1_g000005 Rmu_sc0019965.1_g000001 Rmu_sc0029142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011200 Rroxscaffold_3G00222120 Rroxscaffold_4G00327390
rosa_rugosa	Rorug01G0034800 Rorug07G0319100
rosa_samantha	Rh1AG047600 Rh1BG045500 Rh1DG055900 Rh7AG475200 Rh7BG445100 Rh7CG491400 Rh7DG459700
rosa_wichuraiana	Rw1G004340 Rw7G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	69, 599
AjnI	CCWGG	3 cut(s)	222, 467, 496
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	155, 163, 220
AsuHPI	GGTGA	1 cut(s)	405
AvaII	GGWCC	2 cut(s)	155, 163
Bbv12I	GWGCWC	1 cut(s)	496
BccI	CCATC	4 cut(s)	342, 421, 495, 574
BciT130I	CCWGG	3 cut(s)	224, 469, 498
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	622
BglII	AGATCT	1 cut(s)	193
Bme1390I	CCNGG	3 cut(s)	224, 469, 498
Bme18I	GGWCC	2 cut(s)	155, 163
BmgT120I	GGNCC	3 cut(s)	155, 163, 220
BmiI	GGNNCC	2 cut(s)	133, 300
BmrFI	CCNGG	3 cut(s)	224, 469, 498
BmsI	GCATC	6 cut(s)	193, 255, 395, 419, 457, 485
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	223, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseBI	CCWGG	3 cut(s)	224, 469, 498
BseDI	CCNNGG	2 cut(s)	223, 467
BseGI	GGATG	2 cut(s)	353, 506
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	90, 531
BseRI	GAGGAG	3 cut(s)	297, 338, 348
BseYI	CCCAGC	1 cut(s)	180
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	118, 193, 571
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	89, 530
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	133, 300
BspPI	GGATC	1 cut(s)	126
BspQI	GCTCTTC	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	223, 467
BssMI	GATC	3 cut(s)	118, 193, 571
Bst2UI	CCWGG	3 cut(s)	224, 469, 498
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	3 cut(s)	76, 401, 517
BstF5I	GGATG	2 cut(s)	353, 506
BstKTI	GATC	3 cut(s)	121, 196, 574
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	3 cut(s)	118, 193, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	3 cut(s)	224, 469, 498
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	3 cut(s)	222, 467, 496
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	353, 506
Cac8I	GCNNGC	1 cut(s)	408
CciI	TCATGA	1 cut(s)	249
Cfr13I	GGNCC	3 cut(s)	155, 163, 220
CviAII	CATG	4 cut(s)	250, 359, 407, 417
CviJI	RGCY	4 cut(s)	222, 262, 369, 521
CviKI_1	RGCY	4 cut(s)	222, 262, 369, 521
DdeI	CTNAG	3 cut(s)	76, 401, 517
DpnI	GATC	3 cut(s)	120, 195, 573
DpnII	GATC	3 cut(s)	118, 193, 571
DraIII	CACNNNGTG	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	155, 163
EcoRII	CCWGG	3 cut(s)	222, 467, 496
EcoT22I	ATGCAT	1 cut(s)	412
FaeI	CATG	4 cut(s)	253, 362, 410, 420
FaiI	YATR	8 cut(s)	210, 251, 360, 408, 418, 453, 455, 549
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 246, 278
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	4 cut(s)	249, 358, 406, 416
FokI	GGATG	2 cut(s)	360, 513
FspBI	CTAG	1 cut(s)	622
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	253, 362, 410, 420
HinfI	GANTC	3 cut(s)	13, 362, 437
HphI	GGTGA	1 cut(s)	405
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	22, 571, 576, 604
Hpy188III	TCNNGA	7 cut(s)	78, 129, 144, 197, 250, 269, 533
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	150, 530
HpyCH4V	TGCA	4 cut(s)	212, 246, 410, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	76, 401, 517
Hsp92II	CATG	4 cut(s)	253, 362, 410, 420
Kzo9I	GATC	3 cut(s)	118, 193, 571
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	491
LweI	GCATC	6 cut(s)	193, 255, 395, 419, 457, 485
MaeI	CTAG	1 cut(s)	622
MalI	GATC	3 cut(s)	120, 195, 573
MboI	GATC	3 cut(s)	118, 193, 571
MboII	GAAGA	4 cut(s)	64, 365, 454, 563
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	9 cut(s)	28, 56, 145, 252, 265, 275, 316, 326, 329
Mph1103I	ATGCAT	1 cut(s)	412
MseI	TTAA	3 cut(s)	30, 381, 444
MslI	CAYNNNNRTG	4 cut(s)	254, 415, 499, 546
MspR9I	CCNGG	3 cut(s)	224, 469, 498
MvaI	CCWGG	3 cut(s)	224, 469, 498
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	3 cut(s)	118, 193, 571
NlaIII	CATG	4 cut(s)	253, 362, 410, 420
NlaIV	GGNNCC	2 cut(s)	133, 300
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	410
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	13, 362, 437
Psp6I	CCWGG	3 cut(s)	222, 467, 496
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	3 cut(s)	222, 467, 496
PspN4I	GGNNCC	2 cut(s)	133, 300
PspPI	GGNCC	3 cut(s)	155, 163, 220
PsuI	RGATCY	1 cut(s)	193
RseI	CAYNNNNRTG	4 cut(s)	254, 415, 499, 546
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	30, 381, 444
Sau3AI	GATC	3 cut(s)	118, 193, 571
Sau96I	GGNCC	3 cut(s)	155, 163, 220
ScrFI	CCNGG	3 cut(s)	224, 469, 498
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	9 cut(s)	67, 137, 157, 234, 460, 499, 523, 618, 623
SfaNI	GCATC	6 cut(s)	193, 255, 395, 419, 457, 485
SinI	GGWCC	2 cut(s)	155, 163
SmiMI	CAYNNNNRTG	4 cut(s)	254, 415, 499, 546
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	302
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	622
StyD4I	CCNGG	3 cut(s)	222, 467, 496
TaqI	TCGA	2 cut(s)	61, 435
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	13, 362, 437
Tru1I	TTAA	3 cut(s)	30, 381, 444
Tru9I	TTAA	3 cut(s)	30, 381, 444
TspDTI	ATGAA	4 cut(s)	266, 375, 564, 570
VpaK11BI	GGWCC	2 cut(s)	155, 163
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	1 cut(s)	622
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.