Rroxscaffold_3G00222120

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
5104631 .. 5107321
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222120.1

Sequence Viewer

Length: 1167 bp
ATGGAACCCCAAGAACACCACCACCACCACCACCACCCCCAATCCCCCGAATCCCCACCACCCTCCACCACCACCATTACGCCGCCGACCTGCTGCAAATGCGGCGCCCCCACCGCCTTCGCCGCCCCTCCGCCGTCGTGCTCGCCGCCCCCAAACTACCGCCCCATCCGAGCCCCGGCCATTAATCTCCCCCCAAACAACAACTCCCAACAAGCCATCATCCTCGCCCCGGTCCCACAATCCAAGCCGGTCCCACCCATCTCCCCTCCCTTCCACTTCCAAACCCCCTCCAAAAAAATCCAATCCCCCGACGACATCCGCCGCTTCCACGACTCCGATTCCGGCAAGCACTTCCTCGGCTTCGTCGTCGCCCTCTCCGAATCCATCAGCGGCAAGAAAATCTCCGATCCCTGCCACGTGTCCCCCGTCACCGCCGCCATCGTTTCCATTCTCGAAACCTTGATCAAGTGGGTCGACGAAATCCCGCCGACTCAGCAAGCCGCCCGATACGGCAACGTTTCGTACCGCGTCTGGCATGACCGCATGGTCGAAAATATCCCTGACCTGATGCTCAAATTCCTCCCTCCGCATCTCGAACCTTCCACCGTCGAGATCGTACCTTATTTCACTGATAGCTTCGGAAACGCTAGCCGGATCGACTACGGCACCGGCCACGAGACCAATTTCGCGGCGTGGCTTTACTGCCTGGCGAGAATGGAGGTCATTAAGGAAGAGGACTACCCTGCCGTAGTGGCCAGAGTGTTCGTCAAGTACTTGGAGCTGATGAGGAAGCTGCAGCTGGTCTATTGCTTAGAGCCGGCGGGGTCTCACGGCGTTTGGGGCCTCGACGACTACCATTTCCTGCCGTTTATTTTCGGCTCGTCGCAGTTGATTGATCACAAGTATATGAAGCCGAAGTCGATTCATAATGATGATATATTGGAGAACTTTTCGAAAGAGTATATGTATCTTTCGGGGATTGCTTTCGTGAAGAAGATGAAGAAGGGACCGTTTTCGGAGCACTCTCCTTTGTTGGATGATATTAGTGGGGTGCCGAATTGGAAGAAAGTTAATAGTGGGATGCTGAAGATGTATAAGGTTGAGGTGTTGGAGAAGGTACCAATTATGCAGCATTTCCTATTTGGCTGGCTGATTAACTGGGAGTAG

Protein Analysis

388

Amino Acids

43.87

Weight (kDa)

6.7

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTPA PF03095 96 - 387 9e-123 Phosphotyrosyl phosphate activator (PTPA) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 98
Acc65I GGTACC 1 cut(s) 1117
AccB1I GGYRCC 4 cut(s) 104, 665, 1051, 1117
AccI GTMKAC 1 cut(s) 474
AccII CGCG 2 cut(s) 528, 689
AclI AACGTT 1 cut(s) 516
AclWI GGATC 2 cut(s) 401, 662
AcoI YGGCCR 3 cut(s) 177, 670, 753
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 1106
AcvI CACGTG 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 4 cut(s) 524, 618, 773, 1119
AfiI CCNNNNNNNGG 2 cut(s) 175, 229
AflIII ACRYGT 1 cut(s) 417
AjnI CCWGG 1 cut(s) 705
AluBI AGCT 4 cut(s) 636, 781, 793, 799
AluI AGCT 4 cut(s) 636, 781, 793, 799
Alw21I GWGCWC 2 cut(s) 143, 1023
Alw26I GTCTC 2 cut(s) 671, 831
AlwI GGATC 2 cut(s) 401, 662
AoxI GGCC 4 cut(s) 177, 670, 753, 841
ApeKI GCWGC 4 cut(s) 93, 793, 796, 1129
ApoI RAATTY 1 cut(s) 575
AseI ATTAAT 1 cut(s) 183
Asp718I GGTACC 1 cut(s) 1117
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 4 cut(s) 232, 250, 841, 1007
AsuC2I CCSGG 2 cut(s) 176, 230
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 953
AsuNHI GCTAGC 1 cut(s) 647
AvaII GGWCC 3 cut(s) 232, 250, 1007
BalI TGGCCA 1 cut(s) 755
BanI GGYRCC 4 cut(s) 104, 665, 1051, 1117
BanII GRGCYC 1 cut(s) 175
BauI CACGAG 1 cut(s) 674
BbrPI CACGTG 1 cut(s) 418
Bbv12I GWGCWC 2 cut(s) 143, 1023
BbvI GCAGC 4 cut(s) 80, 780, 808, 1141
BccI CCATC 5 cut(s) 173, 224, 266, 392, 446
BceAI ACGGC 6 cut(s) 118, 526, 679, 731, 847, 850
BciT130I CCWGG 1 cut(s) 707
BclI TGATCA 2 cut(s) 462, 895
BcnI CCSGG 2 cut(s) 176, 230
BcoDI GTCTC 2 cut(s) 671, 831
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 794
BfoI RGCGCY 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 752
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 3 cut(s) 176, 230, 707
Bme18I GGWCC 3 cut(s) 232, 250, 1007
BmgT120I GGNCC 4 cut(s) 232, 250, 841, 1007
BmiI GGNNCC 9 cut(s) 6, 106, 234, 252, 667, 842, 1008, 1053, 1119
BmrFI CCNGG 3 cut(s) 176, 230, 707
BmsI GCATC 3 cut(s) 558, 598, 1071
BmtI GCTAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 953
BpuMI CCSGG 2 cut(s) 176, 230
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 2 cut(s) 671, 831
BsaJI CCNNGG 3 cut(s) 174, 228, 355
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 229
Bse118I RCCGGY 3 cut(s) 247, 668, 817
Bse1I ACTGG 1 cut(s) 1163
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 3 cut(s) 174, 228, 355
BseGI GGATG 5 cut(s) 165, 219, 315, 1042, 1086
BseLI CCNNNNNNNGG 2 cut(s) 175, 229
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 1163
BseXI GCAGC 4 cut(s) 80, 780, 808, 1141
Bsh1236I CGCG 2 cut(s) 528, 689
BshFI GGCC 4 cut(s) 179, 672, 755, 843
BshNI GGYRCC 4 cut(s) 104, 665, 1051, 1117
BsiHKAI GWGCWC 2 cut(s) 143, 1023
BsiSI CCGG 7 cut(s) 176, 230, 248, 342, 652, 669, 818
BslFI GGGAC 4 cut(s) 218, 236, 406, 1020
BslI CCNNNNNNNGG 2 cut(s) 175, 229
BsmAI GTCTC 2 cut(s) 671, 831
BsmFI GGGAC 4 cut(s) 218, 236, 406, 1020
BsnI GGCC 4 cut(s) 179, 672, 755, 843
Bso31I GGTCTC 2 cut(s) 671, 831
Bsp119I TTCGAA 1 cut(s) 953
Bsp1286I GDGCHC 3 cut(s) 143, 175, 1023
Bsp143I GATC 5 cut(s) 406, 462, 612, 654, 895
BspANI GGCC 4 cut(s) 179, 672, 755, 843
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 2 cut(s) 528, 689
BspLI GGNNCC 9 cut(s) 6, 106, 234, 252, 667, 842, 1008, 1053, 1119
BspMAI CTGCAG 1 cut(s) 798
BspMI ACCTGC 1 cut(s) 98
BspOI GCTAGC 1 cut(s) 651
BspPI GGATC 2 cut(s) 401, 662
BspT104I TTCGAA 1 cut(s) 953
BspT107I GGYRCC 4 cut(s) 104, 665, 1051, 1117
BspTNI GGTCTC 2 cut(s) 671, 831
BsrFI RCCGGY 3 cut(s) 247, 668, 817
BsrI ACTGG 1 cut(s) 1163
BssAI RCCGGY 3 cut(s) 247, 668, 817
BssECI CCNNGG 3 cut(s) 174, 228, 355
BssMI GATC 5 cut(s) 406, 462, 612, 654, 895
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 674
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 2 cut(s) 607, 1011
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 953
BstC8I GCNNGC 6 cut(s) 143, 347, 498, 649, 819, 1148
BstDEI CTNAG 2 cut(s) 492, 811
BstF5I GGATG 5 cut(s) 165, 219, 315, 1042, 1086
BstFNI CGCG 2 cut(s) 528, 689
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 5 cut(s) 409, 465, 615, 657, 898
BstMAI GTCTC 2 cut(s) 671, 831
BstMBI GATC 5 cut(s) 406, 462, 612, 654, 895
BstMWI GCNNNNNNNGC 7 cut(s) 99, 102, 113, 122, 493, 752, 840
BstNI CCWGG 1 cut(s) 707
BstSCI CCNGG 3 cut(s) 174, 228, 705
BstSFI CTRYAG 1 cut(s) 794
BstUI CGCG 2 cut(s) 528, 689
BstV1I GCAGC 4 cut(s) 80, 780, 808, 1141
BsuRI GGCC 4 cut(s) 179, 672, 755, 843
BtsCI GGATG 5 cut(s) 165, 219, 315, 1042, 1086
BtsIMutI CAGTG 1 cut(s) 627
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 6 cut(s) 143, 347, 498, 649, 819, 1148
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 3 cut(s) 247, 668, 817
Cfr13I GGNCC 4 cut(s) 232, 250, 841, 1007
CseI GACGC 1 cut(s) 517
Csp6I GTAC 4 cut(s) 523, 617, 772, 1118
CviAII CATG 2 cut(s) 536, 544
CviQI GTAC 4 cut(s) 523, 617, 772, 1118
DdeI CTNAG 2 cut(s) 492, 811
DinI GGCGCC 1 cut(s) 106
DpnI GATC 5 cut(s) 408, 464, 614, 656, 897
DpnII GATC 5 cut(s) 406, 462, 612, 654, 895
DrdI GACNNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 545
EaeI YGGCCR 3 cut(s) 177, 670, 753
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
EciI GGCGGA 2 cut(s) 120, 308
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 2 cut(s) 671, 831
Eco47I GGWCC 3 cut(s) 232, 250, 1007
Eco57I CTGAAG 1 cut(s) 1106
Eco72I CACGTG 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 841
EcoRII CCWGG 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
FaeI CATG 2 cut(s) 539, 547
FaqI GGGAC 4 cut(s) 218, 236, 406, 1020
FatI CATG 2 cut(s) 535, 543
FauI CCCGC 2 cut(s) 492, 814
FbaI TGATCA 2 cut(s) 462, 895
FblI GTMKAC 1 cut(s) 474
FokI GGATG 5 cut(s) 152, 206, 302, 1049, 1093
FriOI GRGCYC 1 cut(s) 175
FspBI CTAG 1 cut(s) 648
GlaI GCGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 4 cut(s) 179, 672, 755, 843
HapII CCGG 7 cut(s) 176, 230, 248, 342, 652, 669, 818
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 539, 547
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 6 cut(s) 50, 332, 338, 380, 490, 922
HpaII CCGG 7 cut(s) 176, 230, 248, 342, 652, 669, 818
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 6 cut(s) 170, 337, 379, 406, 641, 1018
Hpy188III TCNNGA 4 cut(s) 452, 593, 610, 988
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 8 cut(s) 139, 314, 368, 371, 479, 611, 851, 886
HpyAV CCTTC 5 cut(s) 127, 280, 609, 997, 1108
HpyCH4III ACNGT 2 cut(s) 607, 1011
HpyCH4IV ACGT 2 cut(s) 417, 516
HpyCH4V TGCA 3 cut(s) 96, 796, 1129
HpyF10VI GCNNNNNNNGC 7 cut(s) 99, 102, 113, 122, 493, 752, 840
HpyF3I CTNAG 2 cut(s) 492, 811
HpySE526I ACGT 2 cut(s) 417, 516
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 539, 547
HspAI GCGC 1 cut(s) 105
KasI GGCGCC 1 cut(s) 104
KpnI GGTACC 1 cut(s) 1121
KroI GCCGGC 1 cut(s) 817
KroNI GCCGGC 1 cut(s) 819
Ksp22I TGATCA 2 cut(s) 462, 895
Kzo9I GATC 5 cut(s) 406, 462, 612, 654, 895
LmnI GCTCC 2 cut(s) 778, 1018
Lsp1109I GCAGC 4 cut(s) 80, 780, 808, 1141
LweI GCATC 3 cut(s) 558, 598, 1071
MaeI CTAG 1 cut(s) 648
MaeII ACGT 2 cut(s) 417, 516
MaeIII GTNAC 1 cut(s) 427
MalI GATC 5 cut(s) 408, 464, 614, 656, 897
MboI GATC 5 cut(s) 406, 462, 612, 654, 895
MboII GAAGA 6 cut(s) 743, 1003, 1006, 1012, 1075, 1099
MhlI GDGCHC 3 cut(s) 143, 175, 1023
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 4 cut(s) 575, 682, 1057, 1122
MluNI TGGCCA 1 cut(s) 755
Mly113I GGCGCC 1 cut(s) 105
MlyI GAGTC 2 cut(s) 326, 484
MmeI TCCRAC 2 cut(s) 1014, 1089
Mox20I TGGCCA 1 cut(s) 755
MroNI GCCGGC 1 cut(s) 817
MscI TGGCCA 1 cut(s) 755
MseI TTAA 4 cut(s) 183, 726, 1071, 1155
MslI CAYNNNNRTG 1 cut(s) 930
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 2 cut(s) 390, 799
MspI CCGG 7 cut(s) 176, 230, 248, 342, 652, 669, 818
MspR9I CCNGG 3 cut(s) 176, 230, 707
MvaI CCWGG 1 cut(s) 707
MvnI CGCG 2 cut(s) 528, 689
MwoI GCNNNNNNNGC 7 cut(s) 99, 102, 113, 122, 493, 752, 840
NaeI GCCGGC 1 cut(s) 819
NarI GGCGCC 1 cut(s) 105
NciI CCSGG 2 cut(s) 176, 230
NdeII GATC 5 cut(s) 406, 462, 612, 654, 895
NgoMIV GCCGGC 1 cut(s) 817
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 2 cut(s) 539, 547
NlaIV GGNNCC 9 cut(s) 6, 106, 234, 252, 667, 842, 1008, 1053, 1119
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 427
NspV TTCGAA 1 cut(s) 953
PcsI WCGNNNNNNNCGW 3 cut(s) 363, 375, 423
PdiI GCCGGC 1 cut(s) 819
PfeI GAWTC 4 cut(s) 50, 338, 380, 922
PleI GAGTC 2 cut(s) 326, 484
PluTI GGCGCC 1 cut(s) 108
PmaCI CACGTG 1 cut(s) 418
PmlI CACGTG 1 cut(s) 418
PpsI GAGTC 2 cut(s) 326, 484
Ppu21I YACGTR 1 cut(s) 418
PshBI ATTAAT 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 705
PspCI CACGTG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 9 cut(s) 6, 106, 234, 252, 667, 842, 1008, 1053, 1119
PspPI GGNCC 4 cut(s) 232, 250, 841, 1007
PstI CTGCAG 1 cut(s) 798
PvuII CAGCTG 1 cut(s) 799
RsaI GTAC 4 cut(s) 524, 618, 773, 1119
RsaNI GTAC 4 cut(s) 523, 617, 772, 1118
RseI CAYNNNNRTG 1 cut(s) 930
SalI GTCGAC 1 cut(s) 473
SaqAI TTAA 4 cut(s) 183, 726, 1071, 1155
Sau3AI GATC 5 cut(s) 406, 462, 612, 654, 895
Sau96I GGNCC 4 cut(s) 232, 250, 841, 1007
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 2 cut(s) 326, 484
ScrFI CCNGG 3 cut(s) 176, 230, 707
SduI GDGCHC 3 cut(s) 143, 175, 1023
SfaNI GCATC 3 cut(s) 558, 598, 1071
SfcI CTRYAG 1 cut(s) 794
SfoI GGCGCC 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 953
SinI GGWCC 3 cut(s) 232, 250, 1007
SmiMI CAYNNNNRTG 1 cut(s) 930
Sse9I AATT 4 cut(s) 575, 682, 1057, 1122
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 3 cut(s) 174, 228, 705
TaaI ACNGT 2 cut(s) 607, 1011
TaiI ACGT 2 cut(s) 420, 519
TaqI TCGA 9 cut(s) 453, 474, 549, 594, 609, 657, 846, 920, 953
TasI AATT 4 cut(s) 575, 682, 1057, 1122
TatI WGTACW 1 cut(s) 771
TauI GCSGC 9 cut(s) 85, 105, 125, 148, 324, 393, 437, 503, 692
TfiI GAWTC 4 cut(s) 50, 338, 380, 922
Tru1I TTAA 4 cut(s) 183, 726, 1071, 1155
Tru9I TTAA 4 cut(s) 183, 726, 1071, 1155
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 4 cut(s) 93, 793, 796, 1129
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 914, 923, 1013
TspRI CASTG 1 cut(s) 634
VpaK11BI GGWCC 3 cut(s) 232, 250, 1007
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 1 cut(s) 648
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.