pycom08g19810

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
19753922 .. 19757070
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19810.1

Sequence Viewer

Length: 1293 bp
ATGGAACCCCAGCAAACTTCCTGCAAATCGGAGCACCACCACCAAAACCCCAAGTCCCCAGAATCTCCACCATCTTCCATCACCACCATCGCCACCGCCATTTCCACACCAACCTGCTGTAAATGCGGAGCCCCAACCCCCATGGCCGCTCCCCCACCCTCCTTCTCCCACATCTCCCCTCCCCCAAACTACCGCCCAATCCGAGCTCCCGCCATCAACCTCCCTCCAAACTCCAACTCCCAACAGGCCATCATCCTCACTCCTGTACCCCAACCCCTCTCTGTCCCCCAAATCTCCCCTCCCTTCCACTTCCAATCCCCCTCCAAAGTCATCCAGTCCCCCGACGACCTCCGCCGCTTCCACGACTCCTTCTCCGGCAAACACTTCGTCGGATTCGTCGCCGCCCTCTCTGAGTCCATCCGCGCCAAGAAAATCTCCGACCCCTGTCACCAATCCGACACCGTCAACACCATCGTCTCCATTCTAGAAGCCCTAATTCAATGGGTCGACGAAATCCCACCCACCCAGCAAGCCGCCCGATACGGCAACGTTTCATTCCGCTCCTGGCACGAGCGATTGTCCGAAACCAGCCACTCCCTCATGCTGCAGTTCCTCCCCGAGCATCTCCACCCTTCTACCATCGAGATGGTTCCGTATTTCACTGATAGCTTCGGGAACCCGAGCCGAATTGATTACGGTACAGGGCACGAGACCAACTTCGCGGCTTGGCTCTACTGCCTGGCGAGAATGGGGGTGATTAATGAAGAAGATTATCCGGCCGTCGTGGCTCGAGTCTTCGTCAAGTACTTGGACTTGATGAGGAAGCTGCAGTTGGTGTATTGCTTGGAGCCGGCGGGGTCTCACGGCGTTTGGGGCCTCGATGACTACCATTTCCTGCCTTTTATTTTCGGGGCGTCGCAGTTGATTGAGCATAAATATATGAAGCCTAAGTCAATTCACAATGATGATATCGTGGAGAATTTTTCGAAAGAATATTTGTATCTCTCGTGCATTCAGTTTGTGAAGAAGGTGAAGAAGGGTCCATTTTCGGAGCACTCGCCATTGTTGGATGATATCAGCGGAGTACCTAATTGGAACAAAGTGAATAGTGGGTTGCTTAAGATGTATAAGGCTGAGGTGTTGGGGAAGGTTCCGATTATGCAGCATTTTCTGTTTGGCTGGCTCATCAAGTGGACAATCTTTCTTCCAATGGCCCTTATTACTACAAAAGGCACATTCATCCATTTCCAAAGGTTTTCTACCTTTAGAGTTTCCTCTAGGTCGAGACTGTGA

Protein Analysis

431

Amino Acids

48.54

Weight (kDa)

8.51

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTPA PF03095 107 - 398 8.3e-124 Phosphotyrosyl phosphate activator (PTPA) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccBSI CCGCTC 2 cut(s) 149, 561
AccI GTMKAC 1 cut(s) 507
AccII CGCG 2 cut(s) 423, 722
AclI AACGTT 1 cut(s) 549
AcoI YGGCCR 2 cut(s) 144, 777
AcsI RAATTY 1 cut(s) 979
AcyI GRCGYC 1 cut(s) 914
AfaI GTAC 4 cut(s) 267, 700, 806, 1086
AflII CTTAAG 1 cut(s) 1118
AgsI TTSAA 1 cut(s) 500
AjnI CCWGG 2 cut(s) 563, 738
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AluBI AGCT 3 cut(s) 206, 669, 826
AluI AGCT 3 cut(s) 206, 669, 826
Alw21I GWGCWC 3 cut(s) 36, 208, 1056
Alw26I GTCTC 4 cut(s) 481, 704, 864, 1279
Ama87I CYCGRG 3 cut(s) 617, 679, 789
AoxI GGCC 5 cut(s) 144, 246, 777, 874, 1212
ApeKI GCWGC 3 cut(s) 604, 826, 1162
ApoI RAATTY 1 cut(s) 979
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
AseI ATTAAT 1 cut(s) 759
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 3 cut(s) 874, 1040, 1213
AsuHPI GGTGA 4 cut(s) 73, 440, 766, 1042
AsuII TTCGAA 1 cut(s) 986
AvaI CYCGRG 3 cut(s) 617, 679, 789
AvaII GGWCC 1 cut(s) 1040
BaeGI GKGCMC 1 cut(s) 708
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BanII GRGCYC 2 cut(s) 133, 208
BauI CACGAG 3 cut(s) 569, 707, 1006
BbsI GAAGAC 1 cut(s) 787
Bbv12I GWGCWC 3 cut(s) 36, 208, 1056
BbvCI CCTCAGC 1 cut(s) 1134
BbvI GCAGC 3 cut(s) 591, 813, 1174
BccI CCATC 9 cut(s) 79, 86, 95, 221, 257, 425, 479, 640, 647
BceAI ACGGC 3 cut(s) 559, 764, 880
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 2 cut(s) 565, 740
BcoDI GTCTC 4 cut(s) 481, 704, 864, 1279
BfaI CTAG 2 cut(s) 485, 1278
BfmI CTRYAG 2 cut(s) 605, 827
BfrI CTTAAG 1 cut(s) 1118
BfuAI ACCTGC 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 785
BisI GCNGC 8 cut(s) 147, 355, 402, 534, 605, 723, 827, 1163
BlsI GCNGC 8 cut(s) 148, 356, 403, 535, 606, 724, 828, 1164
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 2 cut(s) 565, 740
Bme18I GGWCC 1 cut(s) 1040
BmeT110I CYCGRG 3 cut(s) 617, 679, 789
BmgT120I GGNCC 3 cut(s) 874, 1040, 1213
BmiI GGNNCC 8 cut(s) 6, 130, 651, 677, 849, 875, 1041, 1152
BmrFI CCNGG 2 cut(s) 565, 740
BmsI GCATC 1 cut(s) 631
BoxI GACNNNNGTC 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 787
Bpu10I CCTNAGC 1 cut(s) 1134
Bpu14I TTCGAA 1 cut(s) 986
BsaHI GRCGYC 1 cut(s) 914
BsaI GGTCTC 2 cut(s) 704, 864
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 356, 386
Bse118I RCCGGY 1 cut(s) 850
Bse1I ACTGG 1 cut(s) 334
BseBI CCWGG 2 cut(s) 565, 740
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 5 cut(s) 252, 330, 417, 1075, 1239
BseMII CTCAG 2 cut(s) 402, 1125
BseNI ACTGG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 708
BseX3I CGGCCG 1 cut(s) 777
BseXI GCAGC 3 cut(s) 591, 813, 1174
BseYI CCCAGC 2 cut(s) 9, 525
Bsh1236I CGCG 2 cut(s) 423, 722
Bsh1285I CGRYCG 1 cut(s) 780
BshFI GGCC 5 cut(s) 146, 248, 779, 876, 1214
BsiEI CGRYCG 1 cut(s) 780
BsiHKAI GWGCWC 3 cut(s) 36, 208, 1056
BsiHKCI CYCGRG 3 cut(s) 617, 679, 789
BsiSI CCGG 3 cut(s) 375, 776, 851
BslFI GGGAC 3 cut(s) 40, 269, 322
BsmAI GTCTC 4 cut(s) 481, 704, 864, 1279
BsmBI CGTCTC 1 cut(s) 481
BsmFI GGGAC 3 cut(s) 40, 269, 322
BsmI GAATGC 1 cut(s) 1011
BsnI GGCC 5 cut(s) 146, 248, 779, 876, 1214
Bso31I GGTCTC 2 cut(s) 704, 864
BsoBI CYCGRG 3 cut(s) 617, 679, 789
Bsp119I TTCGAA 1 cut(s) 986
Bsp1286I GDGCHC 5 cut(s) 36, 133, 208, 708, 1056
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 5 cut(s) 146, 248, 779, 876, 1214
BspCNI CTCAG 2 cut(s) 403, 1126
BspFNI CGCG 2 cut(s) 423, 722
BspLI GGNNCC 8 cut(s) 6, 130, 651, 677, 849, 875, 1041, 1152
BspMAI CTGCAG 2 cut(s) 609, 831
BspMI ACCTGC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 986
BspTI CTTAAG 1 cut(s) 1118
BspTNI GGTCTC 2 cut(s) 704, 864
BsrBI CCGCTC 2 cut(s) 149, 561
BsrFI RCCGGY 1 cut(s) 850
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 850
BssECI CCNNGG 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 914
BssSI CACGAG 3 cut(s) 569, 707, 1006
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 3 cut(s) 569, 707, 1006
Bst2UI CCWGG 2 cut(s) 565, 740
Bst4CI ACNGT 3 cut(s) 463, 698, 1290
BstACI GRCGYC 1 cut(s) 914
BstAFI CTTAAG 1 cut(s) 1118
BstBI TTCGAA 1 cut(s) 986
BstC8I GCNNGC 3 cut(s) 531, 852, 1181
BstDEI CTNAG 3 cut(s) 411, 948, 1134
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 5 cut(s) 252, 330, 417, 1075, 1239
BstFNI CGCG 2 cut(s) 423, 722
BstHHI GCGC 1 cut(s) 425
BstMAI GTCTC 4 cut(s) 481, 704, 864, 1279
BstMCI CGRYCG 1 cut(s) 780
BstMWI GCNNNNNNNGC 3 cut(s) 123, 785, 873
BstNI CCWGG 2 cut(s) 565, 740
BstPAI GACNNNNGTC 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 563, 738
BstSFI CTRYAG 2 cut(s) 605, 827
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 2 cut(s) 423, 722
BstV1I GCAGC 3 cut(s) 591, 813, 1174
BstV2I GAAGAC 1 cut(s) 787
BstXI CCANNNNNNTGG 1 cut(s) 646
BstZI CGGCCG 1 cut(s) 777
BsuRI GGCC 5 cut(s) 146, 248, 779, 876, 1214
BtgI CCRYGG 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 5 cut(s) 252, 330, 417, 1075, 1239
BtsIMutI CAGTG 1 cut(s) 660
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 3 cut(s) 531, 852, 1181
CfoI GCGC 1 cut(s) 425
Cfr10I RCCGGY 1 cut(s) 850
Cfr13I GGNCC 3 cut(s) 874, 1040, 1213
CseI GACGC 1 cut(s) 903
Csp6I GTAC 4 cut(s) 266, 699, 805, 1085
CviAII CATG 2 cut(s) 142, 601
CviQI GTAC 4 cut(s) 266, 699, 805, 1085
DdeI CTNAG 3 cut(s) 411, 948, 1134
EaeI YGGCCR 2 cut(s) 144, 777
EagI CGGCCG 1 cut(s) 777
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 206
EclXI CGGCCG 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 133, 208
Eco31I GGTCTC 2 cut(s) 704, 864
Eco32I GATATC 2 cut(s) 970, 1075
Eco47I GGWCC 1 cut(s) 1040
Eco52I CGGCCG 1 cut(s) 777
Eco53kI GAGCTC 1 cut(s) 206
Eco88I CYCGRG 3 cut(s) 617, 679, 789
EcoICRI GAGCTC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 874
EcoRII CCWGG 2 cut(s) 563, 738
EcoRV GATATC 2 cut(s) 970, 1075
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 133, 208
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 481
FaeI CATG 2 cut(s) 145, 604
FaiI YATR 7 cut(s) 143, 602, 933, 939, 941, 1128, 1160
FaqI GGGAC 3 cut(s) 40, 269, 322
FatI CATG 2 cut(s) 141, 600
FauI CCCGC 2 cut(s) 217, 847
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 8 cut(s) 147, 355, 402, 534, 605, 723, 827, 1163
FokI GGATG 5 cut(s) 239, 317, 404, 1082, 1226
FriOI GRGCYC 2 cut(s) 133, 208
Fsp4HI GCNGC 8 cut(s) 147, 355, 402, 534, 605, 723, 827, 1163
FspBI CTAG 2 cut(s) 485, 1278
GlaI GCGC 1 cut(s) 424
GluI GCNGC 8 cut(s) 147, 355, 402, 534, 605, 723, 827, 1163
GsaI CCCAGC 2 cut(s) 13, 529
HaeIII GGCC 5 cut(s) 146, 248, 779, 876, 1214
HapII CCGG 3 cut(s) 375, 776, 851
HgaI GACGC 1 cut(s) 903
HhaI GCGC 1 cut(s) 425
Hin1I GRCGYC 1 cut(s) 914
Hin1II CATG 2 cut(s) 145, 604
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HincII GTYRAC 2 cut(s) 466, 508
HindII GTYRAC 2 cut(s) 466, 508
HinfI GANTC 5 cut(s) 62, 365, 393, 413, 792
HpaII CCGG 3 cut(s) 375, 776, 851
HphI GGTGA 4 cut(s) 73, 440, 766, 1042
Hpy166II GTNNAC 3 cut(s) 466, 508, 1194
Hpy188I TCNGA 9 cut(s) 31, 203, 392, 412, 439, 457, 583, 1051, 1155
Hpy188III TCNNGA 4 cut(s) 485, 643, 673, 1284
Hpy8I GTNNAC 3 cut(s) 466, 508, 1194
Hpy99I CGWCG 6 cut(s) 347, 392, 401, 512, 785, 919
HpyAV CCTTC 7 cut(s) 172, 313, 379, 642, 1021, 1030, 1141
HpyCH4III ACNGT 3 cut(s) 463, 698, 1290
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 5 cut(s) 24, 607, 829, 1011, 1162
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 785, 873
HpyF3I CTNAG 3 cut(s) 411, 948, 1134
HpySE526I ACGT 1 cut(s) 549
Hsp92I GRCGYC 1 cut(s) 914
Hsp92II CATG 2 cut(s) 145, 604
HspAI GCGC 1 cut(s) 423
KroI GCCGGC 1 cut(s) 850
KroNI GCCGGC 1 cut(s) 852
LmnI GCTCC 7 cut(s) 31, 128, 154, 211, 566, 847, 1051
Lsp1109I GCAGC 3 cut(s) 591, 813, 1174
LweI GCATC 1 cut(s) 631
MaeI CTAG 2 cut(s) 485, 1278
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 446
MbiI CCGCTC 2 cut(s) 149, 561
MboII GAAGA 7 cut(s) 66, 776, 779, 787, 1036, 1045, 1196
MhlI GDGCHC 5 cut(s) 36, 133, 208, 708, 1056
MluCI AATT 5 cut(s) 495, 687, 954, 979, 1090
MlyI GAGTC 3 cut(s) 359, 422, 801
MmeI TCCRAC 5 cut(s) 258, 370, 462, 480, 1047
MroNI GCCGGC 1 cut(s) 850
MseI TTAA 2 cut(s) 759, 1119
MslI CAYNNNNRTG 2 cut(s) 644, 963
MspA1I CMGCKG 1 cut(s) 1080
MspCI CTTAAG 1 cut(s) 1118
MspI CCGG 3 cut(s) 375, 776, 851
MspR9I CCNGG 2 cut(s) 565, 740
Mva1269I GAATGC 1 cut(s) 1011
MvaI CCWGG 2 cut(s) 565, 740
MvnI CGCG 2 cut(s) 423, 722
MwoI GCNNNNNNNGC 3 cut(s) 123, 785, 873
NaeI GCCGGC 1 cut(s) 852
NcoI CCATGG 1 cut(s) 141
NgoMIV GCCGGC 1 cut(s) 850
NlaIII CATG 2 cut(s) 145, 604
NlaIV GGNNCC 8 cut(s) 6, 130, 651, 677, 849, 875, 1041, 1152
NmuCI GTSAC 1 cut(s) 446
NspV TTCGAA 1 cut(s) 986
PaeR7I CTCGAG 1 cut(s) 789
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 1 cut(s) 1011
PdiI GCCGGC 1 cut(s) 852
PfeI GAWTC 2 cut(s) 62, 393
PflFI GACNNNGTC 1 cut(s) 461
PkrI GCNGC 8 cut(s) 148, 356, 403, 535, 606, 724, 828, 1164
PleI GAGTC 3 cut(s) 359, 421, 800
PpsI GAGTC 3 cut(s) 359, 421, 800
PshAI GACNNNNGTC 1 cut(s) 444
PshBI ATTAAT 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 208
Psp1406I AACGTT 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 563, 738
PspFI CCCAGC 2 cut(s) 9, 525
PspGI CCWGG 2 cut(s) 563, 738
PspN4I GGNNCC 8 cut(s) 6, 130, 651, 677, 849, 875, 1041, 1152
PspPI GGNCC 3 cut(s) 874, 1040, 1213
PspXI VCTCGAGB 1 cut(s) 789
PstI CTGCAG 2 cut(s) 609, 831
PsyI GACNNNGTC 1 cut(s) 461
RsaI GTAC 4 cut(s) 267, 700, 806, 1086
RsaNI GTAC 4 cut(s) 266, 699, 805, 1085
RseI CAYNNNNRTG 2 cut(s) 644, 963
SacI GAGCTC 1 cut(s) 208
SalI GTCGAC 1 cut(s) 506
SaqAI TTAA 2 cut(s) 759, 1119
SatI GCNGC 8 cut(s) 147, 355, 402, 534, 605, 723, 827, 1163
Sau96I GGNCC 3 cut(s) 874, 1040, 1213
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 3 cut(s) 359, 422, 801
ScrFI CCNGG 2 cut(s) 565, 740
SduI GDGCHC 5 cut(s) 36, 133, 208, 708, 1056
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 2 cut(s) 605, 827
Sfr274I CTCGAG 1 cut(s) 789
SfuI TTCGAA 1 cut(s) 986
SinI GGWCC 1 cut(s) 1040
SlaI CTCGAG 1 cut(s) 789
SmiMI CAYNNNNRTG 2 cut(s) 644, 963
SmlI CTYRAG 2 cut(s) 789, 1118
SmoI CTYRAG 2 cut(s) 789, 1118
Sse9I AATT 5 cut(s) 495, 687, 954, 979, 1090
SspI AATATT 1 cut(s) 995
SspMI CTAG 2 cut(s) 485, 1278
SstI GAGCTC 1 cut(s) 208
StyD4I CCNGG 2 cut(s) 563, 738
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 463, 698, 1290
TaiI ACGT 1 cut(s) 552
TaqI TCGA 6 cut(s) 507, 642, 790, 879, 986, 1283
TasI AATT 5 cut(s) 495, 687, 954, 979, 1090
TatI WGTACW 1 cut(s) 804
TauI GCSGC 5 cut(s) 149, 357, 404, 536, 725
TfiI GAWTC 2 cut(s) 62, 393
Tru1I TTAA 2 cut(s) 759, 1119
Tru9I TTAA 2 cut(s) 759, 1119
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 3 cut(s) 604, 826, 1162
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 4 cut(s) 543, 777, 956, 1228
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 1 cut(s) 667
Tth111I GACNNNGTC 1 cut(s) 461
Vha464I CTTAAG 1 cut(s) 1118
VpaK11BI GGWCC 1 cut(s) 1040
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 1 cut(s) 979
XbaI TCTAGA 1 cut(s) 484
XhoI CTCGAG 1 cut(s) 789
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 2 cut(s) 485, 1278
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.