Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004711

Physical Location & Seq

Genomic Coordinates Reverse (-)

60913755 .. 60918552

Gene Structure 4798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030399

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGCGCCAAGACCACCACCACCACCACCCGGAAACCCTAACACCCTCCACCACCACCTCCACCACCGCCGCCGCCACTCCCTGCGGCAAATGCGGCTCCATGGCCGCACCTCCGCCGCCGCTGTCGTGGCCGGACACCTCCCCGCCCCCAAACTACCGCCCCATCCGAGCCCCCGCCATCAATCTCCCTCAAAACCAACAAGCCATAATCCTCACTCCCGTCCCTCAAGCCAAGTCCGTCCCCCCAATCTCGCCGCCCCCCTTCCATTTCCAAACCCCCTCCAAGATCATCCAATCCCCCGACGACCTCCGCCGCTTCCACGACTCCGATTCCGGCAAACACTTCCTTGGCTTCGTCGTCGCCCTCTCCGAATCCATCCGCTCCAAGAAAATCTCCGACCCCTGCCACCACTCCCCCGTCACCACCGCCATCGTTTCCATTCTCGACACTCTCCTCCGTTGGATCGACGAAATCCCTCCCACTCAGCAAGCCGCCCGATACGGCAACGTATCGTACCGCGTCTGGCACGAGCGCTTGGTCGAGAATAGTTCCAACCTAATGATGCAGTTCCTCCCCCAACATCTGGAAGCTTCCACCGTCGAGATCGTCCCTTATTTCACTGACAGCTTCGGAAACGCGAGCCGGATCGACTACGGCACCGGCCACGAGACCAATTTCGCGGCGTGGCTTTATTGCCTGGCGAGAATGGAGGTCATTAAGGAAGAGGATTACCCTGCCGTGGTGGCCAGAGTGTTCGTCAAGTACTTGGAGTTGATGAGGAAGCTGCAGCTGGTGTATTGCTTAGAGCCGGCGGGGTCTCACGGCGTTTGGGGCCTTGACGACTACCATTTCCTGCCCTTCATTTTCGGCTCTTCGCAGTTGATTGATCACAAGCATATGAAGCCCAAGTCCATTCATAATGATGATATATTGGAGAATTTTTCAAATGAGTATATGTATCTTTCGGGGATTGCTTTTGTGAAGAAGGTGAAGAAGGGTCCGTTTTCGGAGCACTCTCCTTTGTTGGATGATATCAGTGGAGTGCCGAATTGGAACAAAGTCAATAAGGGGATGCTGAAGATGTATAAGGTTGAGGTTTTGGAGAAGGTGCCCATTATGCAGCATTTCCTATTTGGCTGGCTCATCAACTGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

387

Amino Acids

43.78

Weight (kDa)

6.57

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPA	PF03095	94 - 385	1.6e-122	Phosphotyrosyl phosphate activator (PTPA) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08960
fragaria_vesca	FvH4_6g23990
malus_domestica	MD08G1227100.v1.1 MD15G1419400.v1.1
prunus_persica	Prupe.1G521000_v2.0.a1 Prupe.1G521000_v2.0.a1
pyrus_communis	pycom08g19810 pycom15g37230
rosa_chinensis	RchiOBHm_Chr1g0321971 RchiOBHm_Chr7g0243401
rosa_laevigata	RLG00000000849 RLG00000030399
rosa_multiflora	Rmu_sc0000427.1_g000001 Rmu_sc0001036.1_g000017 Rmu_sc0007027.1_g000005 Rmu_sc0019965.1_g000001 Rmu_sc0029142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011200 Rroxscaffold_3G00222120 Rroxscaffold_4G00327390
rosa_rugosa	Rorug01G0034800 Rorug07G0319100
rosa_samantha	Rh1AG047600 Rh1BG045500 Rh1DG055900 Rh7AG475200 Rh7BG445100 Rh7CG491400 Rh7DG459700
rosa_wichuraiana	Rw1G004340 Rw7G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	659, 1111
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccBSI	CCGCTC	1 cut(s)	384
AccII	CGCG	3 cut(s)	522, 641, 683
AclWI	GGATC	2 cut(s)	473, 656
AcoI	YGGCCR	4 cut(s)	105, 131, 664, 747
AcsI	RAATTY	1 cut(s)	940
AcuI	CTGAAG	1 cut(s)	1100
AfaI	GTAC	2 cut(s)	518, 767
AfeI	AGCGCT	1 cut(s)	536
AfiI	CCNNNNNNNGG	3 cut(s)	31, 586, 742
AgsI	TTSAA	1 cut(s)	948
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	4 cut(s)	593, 630, 787, 793
AluI	AGCT	4 cut(s)	593, 630, 787, 793
Alw21I	GWGCWC	1 cut(s)	1017
Alw26I	GTCTC	2 cut(s)	665, 825
AlwI	GGATC	2 cut(s)	473, 656
Aor51HI	AGCGCT	1 cut(s)	536
AoxI	GGCC	5 cut(s)	105, 131, 664, 747, 835
ApeKI	GCWGC	3 cut(s)	787, 790, 1123
ApoI	RAATTY	1 cut(s)	940
AspLEI	GCGC	2 cut(s)	9, 537
AspS9I	GGNCC	2 cut(s)	835, 1001
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	415, 1003
AvaII	GGWCC	1 cut(s)	1001
BaeGI	GKGCMC	1 cut(s)	1116
BalI	TGGCCA	1 cut(s)	749
BanI	GGYRCC	2 cut(s)	659, 1111
BanII	GRGCYC	1 cut(s)	175
BauI	CACGAG	2 cut(s)	530, 668
Bbv12I	GWGCWC	1 cut(s)	1017
BbvI	GCAGC	3 cut(s)	774, 802, 1135
BccI	CCATC	4 cut(s)	173, 188, 386, 440
BceAI	ACGGC	4 cut(s)	520, 673, 725, 841
BciT130I	CCWGG	1 cut(s)	701
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	665, 825
BfmI	CTRYAG	1 cut(s)	788
BfoI	RGCGCY	2 cut(s)	10, 538
BglI	GCCNNNNNGGC	1 cut(s)	746
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	2 cut(s)	32, 701
Bme18I	GGWCC	1 cut(s)	1001
BmgT120I	GGNCC	2 cut(s)	835, 1001
BmiI	GGNNCC	5 cut(s)	100, 661, 836, 1002, 1113
BmrFI	CCNGG	2 cut(s)	32, 701
BmsI	GCATC	2 cut(s)	555, 1065
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	32
BsaI	GGTCTC	2 cut(s)	665, 825
BsaJI	CCNNGG	3 cut(s)	102, 349, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 586, 742
Bse118I	RCCGGY	2 cut(s)	662, 811
Bse1I	ACTGG	1 cut(s)	1157
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	3 cut(s)	102, 349, 741
BseGI	GGATG	5 cut(s)	165, 291, 378, 1036, 1080
BseLI	CCNNNNNNNGG	3 cut(s)	31, 586, 742
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	1157
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	1116
BseXI	GCAGC	3 cut(s)	774, 802, 1135
Bsh1236I	CGCG	3 cut(s)	522, 641, 683
BshFI	GGCC	5 cut(s)	107, 133, 666, 749, 837
BshNI	GGYRCC	2 cut(s)	659, 1111
BsiHKAI	GWGCWC	1 cut(s)	1017
BsiSI	CCGG	6 cut(s)	32, 134, 336, 646, 663, 812
BslFI	GGGAC	3 cut(s)	209, 227, 596
BslI	CCNNNNNNNGG	3 cut(s)	31, 586, 742
BsmAI	GTCTC	2 cut(s)	665, 825
BsmFI	GGGAC	3 cut(s)	209, 227, 596
BsnI	GGCC	5 cut(s)	107, 133, 666, 749, 837
Bso31I	GGTCTC	2 cut(s)	665, 825
Bsp1286I	GDGCHC	3 cut(s)	175, 1017, 1116
Bsp143I	GATC	5 cut(s)	288, 465, 606, 648, 889
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	5 cut(s)	107, 133, 666, 749, 837
BspCNI	CTCAG	1 cut(s)	499
BspFNI	CGCG	3 cut(s)	522, 641, 683
BspLI	GGNNCC	5 cut(s)	100, 661, 836, 1002, 1113
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	2 cut(s)	473, 656
BspQI	GCTCTTC	1 cut(s)	880
BspT107I	GGYRCC	2 cut(s)	659, 1111
BspTNI	GGTCTC	2 cut(s)	665, 825
BsrBI	CCGCTC	1 cut(s)	384
BsrFI	RCCGGY	2 cut(s)	662, 811
BsrI	ACTGG	1 cut(s)	1157
BssAI	RCCGGY	2 cut(s)	662, 811
BssECI	CCNNGG	3 cut(s)	102, 349, 741
BssMI	GATC	5 cut(s)	288, 465, 606, 648, 889
BssSI	CACGAG	2 cut(s)	530, 668
BssT1I	CCWWGG	2 cut(s)	102, 349
Bst2BI	CACGAG	2 cut(s)	530, 668
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	1 cut(s)	601
Bst6I	CTCTTC	2 cut(s)	720, 880
BstC8I	GCNNGC	4 cut(s)	492, 643, 813, 1142
BstDEI	CTNAG	2 cut(s)	486, 805
BstDSI	CCRYGG	2 cut(s)	102, 741
BstF5I	GGATG	5 cut(s)	165, 291, 378, 1036, 1080
BstFNI	CGCG	3 cut(s)	522, 641, 683
BstH2I	RGCGCY	2 cut(s)	10, 538
BstHHI	GCGC	2 cut(s)	9, 537
BstKTI	GATC	5 cut(s)	291, 468, 609, 651, 892
BstMAI	GTCTC	2 cut(s)	665, 825
BstMBI	GATC	5 cut(s)	288, 465, 606, 648, 889
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 96, 130, 746, 834, 904, 1120
BstNI	CCWGG	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	30, 699
BstSFI	CTRYAG	1 cut(s)	788
BstSLI	GKGCMC	1 cut(s)	1116
BstUI	CGCG	3 cut(s)	522, 641, 683
BstV1I	GCAGC	3 cut(s)	774, 802, 1135
BsuRI	GGCC	5 cut(s)	107, 133, 666, 749, 837
BtgI	CCRYGG	2 cut(s)	102, 741
BtsCI	GGATG	5 cut(s)	165, 291, 378, 1036, 1080
BtsIMutI	CAGTG	2 cut(s)	621, 1045
Cac8I	GCNNGC	4 cut(s)	492, 643, 813, 1142
CfoI	GCGC	2 cut(s)	9, 537
Cfr10I	RCCGGY	2 cut(s)	662, 811
Cfr13I	GGNCC	2 cut(s)	835, 1001
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	2 cut(s)	517, 766
CviAII	CATG	1 cut(s)	103
CviQI	GTAC	2 cut(s)	517, 766
DdeI	CTNAG	2 cut(s)	486, 805
DpnI	GATC	5 cut(s)	290, 467, 608, 650, 891
DpnII	GATC	5 cut(s)	288, 465, 606, 648, 889
EaeI	YGGCCR	4 cut(s)	105, 131, 664, 747
Eam1104I	CTCTTC	2 cut(s)	720, 880
EarI	CTCTTC	2 cut(s)	720, 880
EciI	GGCGGA	2 cut(s)	105, 302
Eco130I	CCWWGG	2 cut(s)	102, 349
Eco24I	GRGCYC	1 cut(s)	175
Eco31I	GGTCTC	2 cut(s)	665, 825
Eco32I	GATATC	1 cut(s)	1036
Eco47I	GGWCC	1 cut(s)	1001
Eco47III	AGCGCT	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	1100
EcoO109I	RGGNCCY	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	699
EcoRV	GATATC	1 cut(s)	1036
EcoT14I	CCWWGG	2 cut(s)	102, 349
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	102, 349
FaeI	CATG	1 cut(s)	106
FaqI	GGGAC	3 cut(s)	209, 227, 596
FatI	CATG	1 cut(s)	102
FauI	CCCGC	3 cut(s)	153, 184, 808
FauNDI	CATATG	1 cut(s)	900
FbaI	TGATCA	1 cut(s)	889
FokI	GGATG	5 cut(s)	152, 278, 365, 1043, 1087
FriOI	GRGCYC	1 cut(s)	175
GlaI	GCGC	2 cut(s)	8, 536
HaeII	RGCGCY	2 cut(s)	10, 538
HaeIII	GGCC	5 cut(s)	107, 133, 666, 749, 837
HapII	CCGG	6 cut(s)	32, 134, 336, 646, 663, 812
HgaI	GACGC	1 cut(s)	511
HhaI	GCGC	2 cut(s)	9, 537
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	2 cut(s)	7, 535
HinP1I	GCGC	2 cut(s)	7, 535
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	3 cut(s)	326, 332, 374
HpaII	CCGG	6 cut(s)	32, 134, 336, 646, 663, 812
HphI	GGTGA	2 cut(s)	415, 1003
Hpy188I	TCNGA	6 cut(s)	170, 331, 373, 400, 635, 1012
Hpy188III	TCNNGA	4 cut(s)	446, 544, 587, 604
Hpy99I	CGWCG	5 cut(s)	308, 362, 365, 473, 605
HpyAV	CCTTC	5 cut(s)	274, 871, 982, 991, 1102
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	3 cut(s)	568, 790, 1123
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 96, 130, 746, 834, 904, 1120
HpyF3I	CTNAG	2 cut(s)	486, 805
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	2 cut(s)	7, 535
KroI	GCCGGC	1 cut(s)	811
KroNI	GCCGGC	1 cut(s)	813
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	5 cut(s)	288, 465, 606, 648, 889
LguI	GCTCTTC	1 cut(s)	880
LmnI	GCTCC	4 cut(s)	4, 104, 389, 1012
Lsp1109I	GCAGC	3 cut(s)	774, 802, 1135
LweI	GCATC	2 cut(s)	555, 1065
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	5 cut(s)	290, 467, 608, 650, 891
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	5 cut(s)	288, 465, 606, 648, 889
MboII	GAAGA	5 cut(s)	737, 867, 997, 1006, 1093
MhlI	GDGCHC	3 cut(s)	175, 1017, 1116
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	3 cut(s)	676, 940, 1051
MluNI	TGGCCA	1 cut(s)	749
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	4 cut(s)	423, 443, 579, 1008
Mox20I	TGGCCA	1 cut(s)	749
MroNI	GCCGGC	1 cut(s)	811
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	1 cut(s)	720
MslI	CAYNNNNRTG	1 cut(s)	924
Msp20I	TGGCCA	1 cut(s)	749
MspA1I	CMGCKG	2 cut(s)	124, 793
MspI	CCGG	6 cut(s)	32, 134, 336, 646, 663, 812
MspR9I	CCNGG	2 cut(s)	32, 701
MvaI	CCWGG	1 cut(s)	701
MvnI	CGCG	3 cut(s)	522, 641, 683
MwoI	GCNNNNNNNGC	7 cut(s)	93, 96, 130, 746, 834, 904, 1120
NaeI	GCCGGC	1 cut(s)	813
NciI	CCSGG	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	102
NdeI	CATATG	1 cut(s)	900
NdeII	GATC	5 cut(s)	288, 465, 606, 648, 889
NgoMIV	GCCGGC	1 cut(s)	811
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	5 cut(s)	100, 661, 836, 1002, 1113
NmuCI	GTSAC	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	813
PfeI	GAWTC	2 cut(s)	332, 374
PflMI	CCANNNNNTGG	1 cut(s)	586
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	5 cut(s)	100, 661, 836, 1002, 1113
PspPI	GGNCC	2 cut(s)	835, 1001
PstI	CTGCAG	1 cut(s)	792
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	2 cut(s)	518, 767
RsaNI	GTAC	2 cut(s)	517, 766
RseI	CAYNNNNRTG	1 cut(s)	924
SapI	GCTCTTC	1 cut(s)	880
SaqAI	TTAA	1 cut(s)	720
Sau3AI	GATC	5 cut(s)	288, 465, 606, 648, 889
Sau96I	GGNCC	2 cut(s)	835, 1001
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	32, 701
SduI	GDGCHC	3 cut(s)	175, 1017, 1116
SfaNI	GCATC	2 cut(s)	555, 1065
SfcI	CTRYAG	1 cut(s)	788
SinI	GGWCC	1 cut(s)	1001
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	676, 940, 1051
StyD4I	CCNGG	2 cut(s)	30, 699
StyI	CCWWGG	2 cut(s)	102, 349
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	5 cut(s)	447, 468, 543, 603, 651
TasI	AATT	3 cut(s)	676, 940, 1051
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	2 cut(s)	332, 374
Tru1I	TTAA	1 cut(s)	720
Tru9I	TTAA	1 cut(s)	720
TscAI	CASTG	2 cut(s)	628, 1045
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	3 cut(s)	787, 790, 1123
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	853, 908, 917
TspGWI	ACGGA	3 cut(s)	229, 449, 993
TspRI	CASTG	2 cut(s)	628, 1045
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	1001
XapI	RAATTY	1 cut(s)	940
ZrmI	AGTACT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.