RLG00000000849

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
6556536 .. 6558950
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000849

Sequence Viewer

Length: 1167 bp
ATGGAACCCCAAGAACACCACCACCACCACCACCACCACCAATCCCCCGAAACCCCACCACCCTCCACCACCACCATTTCCCCTCCGACCTGCTGCAAATGCGGCGCCCCCACCGCCTTCGCCGCCCCTCCGCCGTCGTGCTCTCCGCCACCAAACTACCGCCCCATCCGAGCCCCTGCCATCAATCTCCCCCCAAACAACAACTCCCAACAAGCCATCATCCTCGCCCCGGTCCCACAATCCAAGCCGGTCCCACCAATCTCTCCCCCCTTCCGCTTCCAAACCCCCTCCAAGAAAATCCAATCCCCCGACGACATCCGCCGCTTCCACGACTCCGATTCCGGCAAGCACTTCCTCGGCTTCGTCGTCGCCCTCTCGGAATCCATCCGCGGCAAGAAAATCTCCGATCCCTGCCACGTGTCCCCCGCCACCGCCGCCATCGTCTCCGTCCTCGAGACCCTCCACAAATGGGTCGACGAAATCCCGCCGACTCAGCAAGCCGCCCGATACGGCAACGTTTCGTACCGCGCCTGGCACGAGCGATTGGTCCAAAATAGCCCTGACCTAATGCTGAAATTCCTCCCTCCGCATCTCGAAGCTTCCACCGTCGAGATCGTACCTTATTTCACCGATAGCTTCGGAAACGCTAGCCGGATCGACTACGGCACCGGCCACGAGACCAATTTCGCGGCGTGGCTTTACTGCCTGGCGAGAATGGAGGTCATTAAGGAAGAGGACTACCCTGCCGTGGTGGCCAGAGTGTTCGTCAAGTACTTGGAGTTGATGAGGAAGCTGCAGCTGGTCTATTGCTTAGAGCCGGCGGGGTCTCACGGCGTTTGGGGCCTCGACGACTACCATTTCCTGCCGTTTATTTTCGGCTCGTCGCAGTTGATTGATCACAAGTATATGAAGCCGAAGTCGATTCATAATGATGATATATTGGAGAACTTTTCGAAAGAGTATATGTATCTTTCGGGGATTGCTTTCGTGAAGAAGGTGAAGAAGGGGCCGTTTTCGGAGCACTCTCCTTTGTTGGATGATATTAGTGGAGTGCCGAATTGGAAGAAAGTTAATAGTGGGATGCTGAAGATGTATAAGGTTGAGGTGTTGGAGAAGGTACCAATTATGCAGCATTTCCTATTTGGCTGGCTCATCAACTGGGAGTAG

Protein Analysis

389

Amino Acids

43.87

Weight (kDa)

7.34

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTPA PF03095 96 - 387 6.7e-124 Phosphotyrosyl phosphate activator (PTPA) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
Acc65I GGTACC 1 cut(s) 1117
AccB1I GGYRCC 3 cut(s) 104, 665, 1117
AccI GTMKAC 1 cut(s) 474
AccII CGCG 3 cut(s) 390, 528, 689
AclI AACGTT 1 cut(s) 516
AclWI GGATC 2 cut(s) 401, 662
AcoI YGGCCR 2 cut(s) 670, 753
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 1106
AcvI CACGTG 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 4 cut(s) 524, 618, 773, 1119
AfiI CCNNNNNNNGG 3 cut(s) 229, 469, 748
AflIII ACRYGT 1 cut(s) 417
AjnI CCWGG 2 cut(s) 530, 705
AluBI AGCT 4 cut(s) 599, 636, 793, 799
AluI AGCT 4 cut(s) 599, 636, 793, 799
Alw21I GWGCWC 2 cut(s) 143, 1023
Alw26I GTCTC 4 cut(s) 448, 449, 671, 831
AlwI GGATC 2 cut(s) 401, 662
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 4 cut(s) 670, 753, 841, 1007
ApeKI GCWGC 4 cut(s) 93, 793, 796, 1129
ApoI RAATTY 1 cut(s) 575
Asp718I GGTACC 1 cut(s) 1117
AspLEI GCGC 2 cut(s) 107, 530
AspS9I GGNCC 5 cut(s) 232, 250, 547, 841, 1007
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 619, 1009
AsuII TTCGAA 1 cut(s) 953
AsuNHI GCTAGC 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 3 cut(s) 232, 250, 547
BalI TGGCCA 1 cut(s) 755
BanI GGYRCC 3 cut(s) 104, 665, 1117
BanII GRGCYC 1 cut(s) 175
BauI CACGAG 2 cut(s) 536, 674
BbrPI CACGTG 1 cut(s) 418
Bbv12I GWGCWC 2 cut(s) 143, 1023
BbvI GCAGC 4 cut(s) 80, 780, 808, 1141
BccI CCATC 5 cut(s) 173, 188, 224, 392, 446
BceAI ACGGC 7 cut(s) 118, 526, 679, 731, 847, 850, 994
BciT130I CCWGG 2 cut(s) 532, 707
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 4 cut(s) 448, 449, 671, 831
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 794
BfoI RGCGCY 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 752
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 3 cut(s) 230, 532, 707
Bme18I GGWCC 3 cut(s) 232, 250, 547
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 5 cut(s) 232, 250, 547, 841, 1007
BmiI GGNNCC 8 cut(s) 6, 106, 234, 252, 667, 842, 1008, 1119
BmrFI CCNGG 3 cut(s) 230, 532, 707
BmsI GCATC 2 cut(s) 598, 1071
BmtI GCTAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 953
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 3 cut(s) 449, 671, 831
BsaJI CCNNGG 4 cut(s) 228, 355, 388, 747
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 469, 748
Bse118I RCCGGY 3 cut(s) 247, 668, 817
Bse1I ACTGG 1 cut(s) 1163
BseBI CCWGG 2 cut(s) 532, 707
BseDI CCNNGG 4 cut(s) 228, 355, 388, 747
BseGI GGATG 6 cut(s) 165, 219, 315, 384, 1042, 1086
BseLI CCNNNNNNNGG 3 cut(s) 229, 469, 748
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 1163
BseXI GCAGC 4 cut(s) 80, 780, 808, 1141
Bsh1236I CGCG 3 cut(s) 390, 528, 689
BshFI GGCC 4 cut(s) 672, 755, 843, 1009
BshNI GGYRCC 3 cut(s) 104, 665, 1117
BsiHKAI GWGCWC 2 cut(s) 143, 1023
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 6 cut(s) 230, 248, 342, 652, 669, 818
BslFI GGGAC 3 cut(s) 218, 236, 406
BslI CCNNNNNNNGG 3 cut(s) 229, 469, 748
BsmAI GTCTC 4 cut(s) 448, 449, 671, 831
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 3 cut(s) 218, 236, 406
BsnI GGCC 4 cut(s) 672, 755, 843, 1009
Bso31I GGTCTC 3 cut(s) 449, 671, 831
BsoBI CYCGRG 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 953
Bsp1286I GDGCHC 3 cut(s) 143, 175, 1023
Bsp143I GATC 4 cut(s) 406, 612, 654, 895
BspANI GGCC 4 cut(s) 672, 755, 843, 1009
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 3 cut(s) 390, 528, 689
BspLI GGNNCC 8 cut(s) 6, 106, 234, 252, 667, 842, 1008, 1119
BspMAI CTGCAG 1 cut(s) 798
BspMI ACCTGC 1 cut(s) 98
BspOI GCTAGC 1 cut(s) 651
BspPI GGATC 2 cut(s) 401, 662
BspT104I TTCGAA 1 cut(s) 953
BspT107I GGYRCC 3 cut(s) 104, 665, 1117
BspTNI GGTCTC 3 cut(s) 449, 671, 831
BsrFI RCCGGY 3 cut(s) 247, 668, 817
BsrI ACTGG 1 cut(s) 1163
BssAI RCCGGY 3 cut(s) 247, 668, 817
BssECI CCNNGG 4 cut(s) 228, 355, 388, 747
BssMI GATC 4 cut(s) 406, 612, 654, 895
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 2 cut(s) 536, 674
Bst2BI CACGAG 2 cut(s) 536, 674
Bst2UI CCWGG 2 cut(s) 532, 707
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 953
BstC8I GCNNGC 5 cut(s) 347, 498, 649, 819, 1148
BstDEI CTNAG 2 cut(s) 492, 811
BstDSI CCRYGG 2 cut(s) 388, 747
BstF5I GGATG 6 cut(s) 165, 219, 315, 384, 1042, 1086
BstFNI CGCG 3 cut(s) 390, 528, 689
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 530
BstKTI GATC 4 cut(s) 409, 615, 657, 898
BstMAI GTCTC 4 cut(s) 448, 449, 671, 831
BstMBI GATC 4 cut(s) 406, 612, 654, 895
BstMWI GCNNNNNNNGC 8 cut(s) 99, 102, 113, 122, 434, 493, 752, 840
BstNI CCWGG 2 cut(s) 532, 707
BstSCI CCNGG 3 cut(s) 228, 530, 705
BstSFI CTRYAG 1 cut(s) 794
BstUI CGCG 3 cut(s) 390, 528, 689
BstV1I GCAGC 4 cut(s) 80, 780, 808, 1141
BsuRI GGCC 4 cut(s) 672, 755, 843, 1009
BtgI CCRYGG 2 cut(s) 388, 747
BtsCI GGATG 6 cut(s) 165, 219, 315, 384, 1042, 1086
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 5 cut(s) 347, 498, 649, 819, 1148
CfoI GCGC 2 cut(s) 107, 530
Cfr10I RCCGGY 3 cut(s) 247, 668, 817
Cfr13I GGNCC 5 cut(s) 232, 250, 547, 841, 1007
Cfr42I CCGCGG 1 cut(s) 391
Csp6I GTAC 4 cut(s) 523, 617, 772, 1118
CviQI GTAC 4 cut(s) 523, 617, 772, 1118
DdeI CTNAG 2 cut(s) 492, 811
DinI GGCGCC 1 cut(s) 106
DpnI GATC 4 cut(s) 408, 614, 656, 897
DpnII GATC 4 cut(s) 406, 612, 654, 895
EaeI YGGCCR 2 cut(s) 670, 753
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
EciI GGCGGA 3 cut(s) 120, 135, 308
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 3 cut(s) 449, 671, 831
Eco47I GGWCC 3 cut(s) 232, 250, 547
Eco57I CTGAAG 1 cut(s) 1106
Eco72I CACGTG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 841
EcoRII CCWGG 2 cut(s) 530, 705
EcoT38I GRGCYC 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 448
FaiI YATR 8 cut(s) 906, 908, 927, 938, 963, 965, 1095, 1127
FaqI GGGAC 3 cut(s) 218, 236, 406
FauI CCCGC 3 cut(s) 433, 492, 814
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 1 cut(s) 474
FokI GGATG 6 cut(s) 152, 206, 302, 371, 1049, 1093
FriOI GRGCYC 1 cut(s) 175
FspBI CTAG 1 cut(s) 648
GlaI GCGC 2 cut(s) 106, 529
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 4 cut(s) 672, 755, 843, 1009
HapII CCGG 6 cut(s) 230, 248, 342, 652, 669, 818
HhaI GCGC 2 cut(s) 107, 530
Hin1I GRCGYC 1 cut(s) 105
Hin6I GCGC 2 cut(s) 105, 528
HinP1I GCGC 2 cut(s) 105, 528
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 5 cut(s) 332, 338, 380, 490, 922
HpaII CCGG 6 cut(s) 230, 248, 342, 652, 669, 818
HphI GGTGA 2 cut(s) 619, 1009
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 7 cut(s) 87, 170, 337, 379, 406, 641, 1018
Hpy188III TCNNGA 4 cut(s) 454, 593, 610, 988
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 8 cut(s) 139, 314, 368, 371, 479, 611, 851, 886
HpyAV CCTTC 5 cut(s) 127, 280, 988, 997, 1108
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 2 cut(s) 417, 516
HpyCH4V TGCA 3 cut(s) 96, 796, 1129
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 102, 113, 122, 434, 493, 752, 840
HpyF3I CTNAG 2 cut(s) 492, 811
HpySE526I ACGT 2 cut(s) 417, 516
Hsp92I GRCGYC 1 cut(s) 105
HspAI GCGC 2 cut(s) 105, 528
KasI GGCGCC 1 cut(s) 104
KpnI GGTACC 1 cut(s) 1121
KroI GCCGGC 1 cut(s) 817
KroNI GCCGGC 1 cut(s) 819
Ksp22I TGATCA 1 cut(s) 895
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 4 cut(s) 406, 612, 654, 895
LmnI GCTCC 1 cut(s) 1018
Lsp1109I GCAGC 4 cut(s) 80, 780, 808, 1141
LweI GCATC 2 cut(s) 598, 1071
MaeI CTAG 1 cut(s) 648
MaeII ACGT 2 cut(s) 417, 516
MalI GATC 4 cut(s) 408, 614, 656, 897
MboI GATC 4 cut(s) 406, 612, 654, 895
MboII GAAGA 5 cut(s) 743, 1003, 1012, 1075, 1099
MhlI GDGCHC 3 cut(s) 143, 175, 1023
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 4 cut(s) 575, 682, 1057, 1122
MluNI TGGCCA 1 cut(s) 755
Mly113I GGCGCC 1 cut(s) 105
MlyI GAGTC 2 cut(s) 326, 484
MmeI TCCRAC 3 cut(s) 110, 1014, 1089
Mox20I TGGCCA 1 cut(s) 755
MroNI GCCGGC 1 cut(s) 817
MscI TGGCCA 1 cut(s) 755
MseI TTAA 2 cut(s) 726, 1071
MslI CAYNNNNRTG 1 cut(s) 930
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 2 cut(s) 390, 799
MspI CCGG 6 cut(s) 230, 248, 342, 652, 669, 818
MspR9I CCNGG 3 cut(s) 230, 532, 707
MvaI CCWGG 2 cut(s) 532, 707
MvnI CGCG 3 cut(s) 390, 528, 689
MwoI GCNNNNNNNGC 8 cut(s) 99, 102, 113, 122, 434, 493, 752, 840
NaeI GCCGGC 1 cut(s) 819
NarI GGCGCC 1 cut(s) 105
NciI CCSGG 1 cut(s) 230
NdeII GATC 4 cut(s) 406, 612, 654, 895
NgoMIV GCCGGC 1 cut(s) 817
NheI GCTAGC 1 cut(s) 647
NlaIV GGNNCC 8 cut(s) 6, 106, 234, 252, 667, 842, 1008, 1119
NmeAIII GCCGAG 1 cut(s) 336
NspV TTCGAA 1 cut(s) 953
PaeR7I CTCGAG 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 819
PfeI GAWTC 3 cut(s) 338, 380, 922
PleI GAGTC 2 cut(s) 326, 484
PluTI GGCGCC 1 cut(s) 108
PmaCI CACGTG 1 cut(s) 418
PmlI CACGTG 1 cut(s) 418
PpsI GAGTC 2 cut(s) 326, 484
Ppu21I YACGTR 1 cut(s) 418
Psp1406I AACGTT 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 530, 705
PspCI CACGTG 1 cut(s) 418
PspGI CCWGG 2 cut(s) 530, 705
PspN4I GGNNCC 8 cut(s) 6, 106, 234, 252, 667, 842, 1008, 1119
PspPI GGNCC 5 cut(s) 232, 250, 547, 841, 1007
PstI CTGCAG 1 cut(s) 798
PvuII CAGCTG 1 cut(s) 799
RsaI GTAC 4 cut(s) 524, 618, 773, 1119
RsaNI GTAC 4 cut(s) 523, 617, 772, 1118
RseI CAYNNNNRTG 1 cut(s) 930
SacII CCGCGG 1 cut(s) 391
SalI GTCGAC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 726, 1071
Sau3AI GATC 4 cut(s) 406, 612, 654, 895
Sau96I GGNCC 5 cut(s) 232, 250, 547, 841, 1007
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 2 cut(s) 326, 484
ScrFI CCNGG 3 cut(s) 230, 532, 707
SduI GDGCHC 3 cut(s) 143, 175, 1023
SfaNI GCATC 2 cut(s) 598, 1071
SfcI CTRYAG 1 cut(s) 794
SfoI GGCGCC 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 452
Sfr303I CCGCGG 1 cut(s) 391
SfuI TTCGAA 1 cut(s) 953
SgrBI CCGCGG 1 cut(s) 391
SinI GGWCC 3 cut(s) 232, 250, 547
SlaI CTCGAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 930
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 4 cut(s) 575, 682, 1057, 1122
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 3 cut(s) 228, 530, 705
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 2 cut(s) 420, 519
TaqI TCGA 8 cut(s) 453, 474, 594, 609, 657, 846, 920, 953
TasI AATT 4 cut(s) 575, 682, 1057, 1122
TatI WGTACW 1 cut(s) 771
TauI GCSGC 7 cut(s) 105, 125, 324, 393, 437, 503, 692
TfiI GAWTC 3 cut(s) 338, 380, 922
Tru1I TTAA 2 cut(s) 726, 1071
Tru9I TTAA 2 cut(s) 726, 1071
TseI GCWGC 4 cut(s) 93, 793, 796, 1129
TspDTI ATGAA 2 cut(s) 914, 923
TspGWI ACGGA 1 cut(s) 436
VpaK11BI GGWCC 3 cut(s) 232, 250, 547
XapI RAATTY 1 cut(s) 575
XhoI CTCGAG 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 1 cut(s) 648
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.