Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004711

Physical Location & Seq

Genomic Coordinates Forward (+)

6069732 .. 6098751

Gene Structure 29020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG045500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCAGCACCTCCGCCGCCGCTGTCGTGGCCGGACACCTCCCCACCCCCAAACTACCACCCCATCCGAGCCCCCGCCATCAACCTCCCTCCAAACCAACAAGCCATAATCCTCACCCCTGTCCCTCAAGCCAAGTCCGTCCCCCCAATCTCACCCCCCTTCCATTTCCAAACCCCCTCCAAAATCATCCAATCCCCCGACGACCTCCGCCGCTTCCACGACTCCGATTCCGGCAAACACTTCCTCGGCTTCGTCGTCGCCCTCTCCGAATCCATCCGCTCGAATAAAATCTCTGACCCCTGCCACCACTCCCCCGTCACCACCGCCATCGTCTCCATTCTCGACACTCTCCTCCGTTGGATCGACGAAATCCCTCCCACTCAGCAAGCCGCTCGATACGGCAACGTTTCGTACCGCGTCTGGCACGAGCGCTTGGTCGAGAATAGCTCCAACCTAATGATGCAATTCCTCCCCCAACATCTTGAAGCTTCCACCGTCGAGATTGTCCCTTATTTCACTGACAGCTTCGGAAACGCGAGCCGGATCGACTACGGCACCGGCCACGAGACCAATTTCGCGGCGTGGCTTTATTGCCTGGCGAGAATGGAGGTCATTAAGGAAGAGGATTACCCTGCCGTGGTGGCCAGAGTGTTCGTCAAGTACTTGGAGTTGATGAGGAAGCTGCAGCTGGTGTATTGCTTAGAGCCGGCGGGGTCTCACGGCGTTTGGGGCCTTGACGACTACCATTTCCTGCCCTTCATTTTCGGCTCTTCGCAGTTGATTGATCACAAGCATATGAAGCCCAAGTCCATTCATAATGATGATATACTGGAGAATTTTTCAAATGAGTATATGTATCTTTCGGGGATTGCTTTTGTGAAGAAGGTGAAGAAGGGTCCGTTTTCAGAGCACTCTCCTTTGTTGGATGATATCAGTGGAGTGCCGAATTGGAACAAAGTCAATAAGGGGATGCTGAAGATGTATAAGGTTGAGGTATTGGAGAAGTTACCCATCATGCAGCATTTCCTATTTGGCTGGCTCATCAACTGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

351

Amino Acids

40.02

Weight (kDa)

6.34

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTPA	PF03095	59 - 350	2.1e-122	Phosphotyrosyl phosphate activator (PTPA) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08960
fragaria_vesca	FvH4_6g23990
malus_domestica	MD08G1227100.v1.1 MD15G1419400.v1.1
prunus_persica	Prupe.1G521000_v2.0.a1 Prupe.1G521000_v2.0.a1
pyrus_communis	pycom08g19810 pycom15g37230
rosa_chinensis	RchiOBHm_Chr1g0321971 RchiOBHm_Chr7g0243401
rosa_laevigata	RLG00000000849 RLG00000030399
rosa_multiflora	Rmu_sc0000427.1_g000001 Rmu_sc0001036.1_g000017 Rmu_sc0007027.1_g000005 Rmu_sc0019965.1_g000001 Rmu_sc0029142.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011200 Rroxscaffold_3G00222120 Rroxscaffold_4G00327390
rosa_rugosa	Rorug01G0034800 Rorug07G0319100
rosa_samantha	Rh1AG047600 Rh1BG045500 Rh1DG055900 Rh7AG475200 Rh7BG445100 Rh7CG491400 Rh7DG459700
rosa_wichuraiana	Rw1G004340 Rw7G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	554
AccBSI	CCGCTC	2 cut(s)	279, 392
AccII	CGCG	3 cut(s)	417, 536, 578
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	2 cut(s)	368, 551
AcoI	YGGCCR	3 cut(s)	29, 559, 642
AcsI	RAATTY	1 cut(s)	835
AcuI	CTGAAG	1 cut(s)	995
AfaI	GTAC	2 cut(s)	413, 662
AfeI	AGCGCT	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	637
AgsI	TTSAA	2 cut(s)	485, 843
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	5 cut(s)	447, 488, 525, 682, 688
AluI	AGCT	5 cut(s)	447, 488, 525, 682, 688
Alw21I	GWGCWC	1 cut(s)	912
Alw26I	GTCTC	3 cut(s)	337, 560, 720
AlwI	GGATC	2 cut(s)	368, 551
Aor51HI	AGCGCT	1 cut(s)	431
AoxI	GGCC	4 cut(s)	29, 559, 642, 730
ApeKI	GCWGC	4 cut(s)	5, 682, 685, 1018
ApoI	RAATTY	1 cut(s)	835
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	730, 896
AsuHPI	GGTGA	4 cut(s)	106, 144, 310, 898
AvaII	GGWCC	1 cut(s)	896
BalI	TGGCCA	1 cut(s)	644
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	73
BauI	CACGAG	2 cut(s)	425, 563
Bbv12I	GWGCWC	1 cut(s)	912
BbvI	GCAGC	4 cut(s)	17, 669, 697, 1030
BccI	CCATC	5 cut(s)	71, 86, 281, 335, 1019
BceAI	ACGGC	4 cut(s)	415, 568, 620, 736
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	596
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	3 cut(s)	337, 560, 720
BfmI	CTRYAG	1 cut(s)	683
BfoI	RGCGCY	1 cut(s)	433
BglI	GCCNNNNNGGC	1 cut(s)	641
BisI	GCNGC	9 cut(s)	6, 17, 20, 211, 390, 579, 683, 686, 1019
BlsI	GCNGC	9 cut(s)	7, 18, 21, 212, 391, 580, 684, 687, 1020
BmcAI	AGTACT	1 cut(s)	662
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	896
BmgT120I	GGNCC	2 cut(s)	730, 896
BmiI	GGNNCC	3 cut(s)	556, 731, 897
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	2 cut(s)	450, 960
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	1 cut(s)	851
BpuEI	CTTGAG	1 cut(s)	111
BsaI	GGTCTC	2 cut(s)	560, 720
BsaJI	CCNNGG	2 cut(s)	244, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse118I	RCCGGY	2 cut(s)	557, 706
Bse1I	ACTGG	2 cut(s)	834, 1052
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	244, 636
BseGI	GGATG	5 cut(s)	63, 186, 273, 931, 975
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	834, 1052
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	4 cut(s)	17, 669, 697, 1030
Bsh1236I	CGCG	3 cut(s)	417, 536, 578
BshFI	GGCC	4 cut(s)	31, 561, 644, 732
BshNI	GGYRCC	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	912
BsiSI	CCGG	5 cut(s)	32, 231, 541, 558, 707
BslFI	GGGAC	3 cut(s)	107, 125, 491
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	3 cut(s)	337, 560, 720
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	3 cut(s)	107, 125, 491
BsnI	GGCC	4 cut(s)	31, 561, 644, 732
Bso31I	GGTCTC	2 cut(s)	560, 720
Bsp1286I	GDGCHC	2 cut(s)	73, 912
Bsp143I	GATC	3 cut(s)	360, 543, 784
BspANI	GGCC	4 cut(s)	31, 561, 644, 732
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	3 cut(s)	417, 536, 578
BspLI	GGNNCC	3 cut(s)	556, 731, 897
BspMAI	CTGCAG	1 cut(s)	687
BspPI	GGATC	2 cut(s)	368, 551
BspQI	GCTCTTC	1 cut(s)	775
BspT107I	GGYRCC	1 cut(s)	554
BspTNI	GGTCTC	2 cut(s)	560, 720
BsrBI	CCGCTC	2 cut(s)	279, 392
BsrFI	RCCGGY	2 cut(s)	557, 706
BsrI	ACTGG	2 cut(s)	834, 1052
BssAI	RCCGGY	2 cut(s)	557, 706
BssECI	CCNNGG	2 cut(s)	244, 636
BssMI	GATC	3 cut(s)	360, 543, 784
BssSI	CACGAG	2 cut(s)	425, 563
Bst2BI	CACGAG	2 cut(s)	425, 563
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	2 cut(s)	615, 775
BstC8I	GCNNGC	4 cut(s)	387, 538, 708, 1037
BstDEI	CTNAG	2 cut(s)	381, 700
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	5 cut(s)	63, 186, 273, 931, 975
BstFNI	CGCG	3 cut(s)	417, 536, 578
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	3 cut(s)	363, 546, 787
BstMAI	GTCTC	3 cut(s)	337, 560, 720
BstMBI	GATC	3 cut(s)	360, 543, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 641, 729, 799
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	683
BstUI	CGCG	3 cut(s)	417, 536, 578
BstV1I	GCAGC	4 cut(s)	17, 669, 697, 1030
BsuRI	GGCC	4 cut(s)	31, 561, 644, 732
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	5 cut(s)	63, 186, 273, 931, 975
BtsIMutI	CAGTG	2 cut(s)	516, 940
Cac8I	GCNNGC	4 cut(s)	387, 538, 708, 1037
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	2 cut(s)	557, 706
Cfr13I	GGNCC	2 cut(s)	730, 896
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	412, 661
CviAII	CATG	1 cut(s)	1015
CviQI	GTAC	2 cut(s)	412, 661
DdeI	CTNAG	2 cut(s)	381, 700
DpnI	GATC	3 cut(s)	362, 545, 786
DpnII	GATC	3 cut(s)	360, 543, 784
EaeI	YGGCCR	3 cut(s)	29, 559, 642
Eam1104I	CTCTTC	2 cut(s)	615, 775
EarI	CTCTTC	2 cut(s)	615, 775
EciI	GGCGGA	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	2 cut(s)	560, 720
Eco32I	GATATC	1 cut(s)	931
Eco47I	GGWCC	1 cut(s)	896
Eco47III	AGCGCT	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	995
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	931
EcoT38I	GRGCYC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	1 cut(s)	1018
FaiI	YATR	9 cut(s)	107, 795, 797, 816, 827, 852, 854, 984, 1016
FaqI	GGGAC	3 cut(s)	107, 125, 491
FatI	CATG	1 cut(s)	1014
FauI	CCCGC	2 cut(s)	82, 703
FauNDI	CATATG	1 cut(s)	795
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	9 cut(s)	6, 17, 20, 211, 390, 579, 683, 686, 1019
FokI	GGATG	5 cut(s)	50, 173, 260, 938, 982
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	9 cut(s)	6, 17, 20, 211, 390, 579, 683, 686, 1019
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	9 cut(s)	6, 17, 20, 211, 390, 579, 683, 686, 1019
GsuI	CTGGAG	1 cut(s)	851
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	4 cut(s)	31, 561, 644, 732
HapII	CCGG	5 cut(s)	32, 231, 541, 558, 707
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	1 cut(s)	1018
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	3 cut(s)	221, 227, 269
HpaII	CCGG	5 cut(s)	32, 231, 541, 558, 707
HphI	GGTGA	4 cut(s)	106, 144, 310, 898
Hpy188I	TCNGA	6 cut(s)	68, 226, 268, 295, 530, 907
Hpy188III	TCNNGA	4 cut(s)	341, 439, 482, 499
Hpy99I	CGWCG	5 cut(s)	203, 257, 260, 368, 500
HpyAV	CCTTC	4 cut(s)	169, 766, 877, 886
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	463, 685, 1018
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 641, 729, 799
HpyF3I	CTNAG	2 cut(s)	381, 700
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	1018
HspAI	GCGC	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	706
KroNI	GCCGGC	1 cut(s)	708
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	360, 543, 784
LguI	GCTCTTC	1 cut(s)	775
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	4 cut(s)	17, 669, 697, 1030
LweI	GCATC	2 cut(s)	450, 960
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	316, 1005
MalI	GATC	3 cut(s)	362, 545, 786
MbiI	CCGCTC	2 cut(s)	279, 392
MboI	GATC	3 cut(s)	360, 543, 784
MboII	GAAGA	5 cut(s)	632, 762, 892, 901, 988
MhlI	GDGCHC	2 cut(s)	73, 912
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	4 cut(s)	464, 571, 835, 946
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	3 cut(s)	338, 474, 903
Mox20I	TGGCCA	1 cut(s)	644
MroNI	GCCGGC	1 cut(s)	706
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	819
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	2 cut(s)	22, 688
MspI	CCGG	5 cut(s)	32, 231, 541, 558, 707
MspR9I	CCNGG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	3 cut(s)	417, 536, 578
MwoI	GCNNNNNNNGC	4 cut(s)	28, 641, 729, 799
NaeI	GCCGGC	1 cut(s)	708
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	3 cut(s)	360, 543, 784
NgoMIV	GCCGGC	1 cut(s)	706
NlaIII	CATG	1 cut(s)	1018
NlaIV	GGNNCC	3 cut(s)	556, 731, 897
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	775
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 264
PdiI	GCCGGC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	227, 269
PkrI	GCNGC	9 cut(s)	7, 18, 21, 212, 391, 580, 684, 687, 1020
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp1406I	AACGTT	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	556, 731, 897
PspPI	GGNCC	2 cut(s)	730, 896
PstI	CTGCAG	1 cut(s)	687
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	2 cut(s)	413, 662
RsaNI	GTAC	2 cut(s)	412, 661
RseI	CAYNNNNRTG	1 cut(s)	819
SapI	GCTCTTC	1 cut(s)	775
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	9 cut(s)	6, 17, 20, 211, 390, 579, 683, 686, 1019
Sau3AI	GATC	3 cut(s)	360, 543, 784
Sau96I	GGNCC	2 cut(s)	730, 896
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	73, 912
SfaNI	GCATC	2 cut(s)	450, 960
SfcI	CTRYAG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	896
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	4 cut(s)	464, 571, 835, 946
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	7 cut(s)	281, 342, 363, 394, 438, 498, 546
TasI	AATT	4 cut(s)	464, 571, 835, 946
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	5 cut(s)	19, 22, 213, 392, 581
TfiI	GAWTC	2 cut(s)	227, 269
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	2 cut(s)	523, 940
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	4 cut(s)	5, 682, 685, 1018
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	748, 803, 812
TspGWI	ACGGA	3 cut(s)	127, 344, 888
TspRI	CASTG	2 cut(s)	523, 940
VpaK11BI	GGWCC	1 cut(s)	896
XapI	RAATTY	1 cut(s)	835
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.